Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04730 and HGI48_RS04735 are separated by 30 nucleotides HGI48_RS04735 and HGI48_RS04740 are separated by 19 nucleotides HGI48_RS04740 and HGI48_RS04745 overlap by 4 nucleotides
HGI48_RS04730: HGI48_RS04730 - hypothetical protein, at 991,378 to 992,454
_RS04730
HGI48_RS04735: HGI48_RS04735 - hypothetical protein, at 992,485 to 993,561
_RS04735
HGI48_RS04740: HGI48_RS04740 - HAD family hydrolase, at 993,581 to 994,276
_RS04740
HGI48_RS04745: HGI48_RS04745 - hypothetical protein, at 994,273 to 995,142
_RS04745
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.552 kb on - strand, within HGI48_RS04730 at 991.602 kb on + strand, within HGI48_RS04730 at 991.604 kb on + strand, within HGI48_RS04730 at 991.626 kb on + strand, within HGI48_RS04730 at 991.801 kb on - strand, within HGI48_RS04730 at 991.907 kb on + strand, within HGI48_RS04730 at 991.908 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.168 kb on - strand, within HGI48_RS04730 at 992.178 kb on + strand, within HGI48_RS04730 at 992.179 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.649 kb on - strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.734 kb on - strand, within HGI48_RS04735 at 993.094 kb on - strand, within HGI48_RS04735 at 993.098 kb on + strand at 993.117 kb on - strand, within HGI48_RS04735 at 993.347 kb on + strand, within HGI48_RS04735 at 993.401 kb on + strand, within HGI48_RS04735 at 993.402 kb on - strand, within HGI48_RS04735 at 993.480 kb on + strand at 993.575 kb on - strand at 993.603 kb on + strand at 993.732 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.953 kb on - strand, within HGI48_RS04740 at 994.027 kb on - strand, within HGI48_RS04740 at 994.071 kb on - strand at 994.091 kb on - strand, within HGI48_RS04740 at 994.092 kb on + strand, within HGI48_RS04740 at 994.155 kb on + strand, within HGI48_RS04740 at 994.191 kb on + strand, within HGI48_RS04740 at 994.237 kb on - strand at 994.254 kb on + strand at 994.255 kb on - strand at 994.347 kb on + strand at 994.348 kb on - strand at 994.348 kb on - strand at 994.444 kb on + strand, within HGI48_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 991,552 - HGI48_RS04730 0.16 -1.9 991,602 + HGI48_RS04730 0.21 +0.7 991,604 + HGI48_RS04730 0.21 +1.0 991,626 + HGI48_RS04730 0.23 -1.4 991,801 - HGI48_RS04730 0.39 -1.0 991,907 + HGI48_RS04730 0.49 -1.9 991,908 - HGI48_RS04730 0.49 -0.3 992,087 - HGI48_RS04730 0.66 -0.8 992,087 - HGI48_RS04730 0.66 -0.6 992,087 - HGI48_RS04730 0.66 -1.0 992,088 + HGI48_RS04730 0.66 +0.4 992,088 + HGI48_RS04730 0.66 -0.9 992,168 - HGI48_RS04730 0.73 -1.6 992,178 + HGI48_RS04730 0.74 -1.0 992,179 - HGI48_RS04730 0.74 +0.0 992,184 - HGI48_RS04730 0.75 -0.0 992,184 - HGI48_RS04730 0.75 -2.9 992,649 - HGI48_RS04735 0.15 -0.4 992,733 + HGI48_RS04735 0.23 -1.1 992,733 + HGI48_RS04735 0.23 -0.9 992,734 - HGI48_RS04735 0.23 -0.4 993,094 - HGI48_RS04735 0.57 -1.1 993,098 + -1.1 993,117 - HGI48_RS04735 0.59 -2.1 993,347 + HGI48_RS04735 0.80 -2.7 993,401 + HGI48_RS04735 0.85 -0.1 993,402 - HGI48_RS04735 0.85 -2.0 993,480 + +1.2 993,575 - -0.4 993,603 + -0.8 993,732 - HGI48_RS04740 0.22 -1.4 993,950 - HGI48_RS04740 0.53 -1.6 993,950 - HGI48_RS04740 0.53 -2.3 993,950 - HGI48_RS04740 0.53 -0.2 993,953 - HGI48_RS04740 0.53 -0.1 994,027 - HGI48_RS04740 0.64 -0.6 994,071 - -0.1 994,091 - HGI48_RS04740 0.73 +1.4 994,092 + HGI48_RS04740 0.73 -0.8 994,155 + HGI48_RS04740 0.82 -0.0 994,191 + HGI48_RS04740 0.88 +0.4 994,237 - -0.6 994,254 + +0.7 994,255 - -1.6 994,347 + +2.4 994,348 - +0.4 994,348 - +1.3 994,444 + HGI48_RS04745 0.20 -1.9
Or see this region's nucleotide sequence