Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04630 and HGI48_RS04635 are separated by 333 nucleotides HGI48_RS04635 and HGI48_RS04640 are separated by 99 nucleotides HGI48_RS04640 and HGI48_RS04645 are separated by 323 nucleotides
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
HGI48_RS04635: HGI48_RS04635 - TIGR00645 family protein, at 972,189 to 972,722
_RS04635
HGI48_RS04640: HGI48_RS04640 - molybdopterin-dependent oxidoreductase, at 972,822 to 975,083
_RS04640
HGI48_RS04645: HGI48_RS04645 - hypothetical protein, at 975,407 to 976,231
_RS04645
Position (kb) 972
973
974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 971.856 kb on - strand at 971.895 kb on + strand at 971.895 kb on + strand at 971.896 kb on - strand at 971.909 kb on - strand at 971.916 kb on + strand at 971.917 kb on - strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.014 kb on + strand at 972.015 kb on - strand at 972.063 kb on + strand at 972.150 kb on + strand at 972.175 kb on - strand at 972.210 kb on - strand at 972.210 kb on - strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.216 kb on + strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.217 kb on - strand at 972.247 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.421 kb on - strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.603 kb on + strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand, within HGI48_RS04635 at 972.604 kb on - strand at 972.610 kb on + strand, within HGI48_RS04635 at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.713 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.720 kb on + strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 972.721 kb on - strand at 973.030 kb on + strand at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.111 kb on + strand, within HGI48_RS04640 at 973.112 kb on - strand, within HGI48_RS04640 at 973.202 kb on + strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.203 kb on - strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.317 kb on + strand, within HGI48_RS04640 at 973.318 kb on - strand, within HGI48_RS04640 at 973.420 kb on + strand, within HGI48_RS04640 at 973.420 kb on + strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.421 kb on - strand, within HGI48_RS04640 at 973.495 kb on + strand, within HGI48_RS04640 at 973.495 kb on + strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.584 kb on - strand, within HGI48_RS04640 at 973.588 kb on + strand, within HGI48_RS04640 at 973.853 kb on - strand, within HGI48_RS04640 at 973.877 kb on + strand, within HGI48_RS04640 at 973.878 kb on - strand, within HGI48_RS04640 at 973.878 kb on - strand, within HGI48_RS04640 at 973.880 kb on - strand, within HGI48_RS04640 at 974.119 kb on + strand, within HGI48_RS04640 at 974.120 kb on - strand, within HGI48_RS04640 at 974.120 kb on - strand, within HGI48_RS04640 at 974.132 kb on + strand, within HGI48_RS04640 at 974.133 kb on - strand, within HGI48_RS04640 at 974.133 kb on - strand, within HGI48_RS04640 at 974.251 kb on + strand, within HGI48_RS04640 at 974.252 kb on - strand, within HGI48_RS04640 at 974.252 kb on - strand, within HGI48_RS04640 at 974.614 kb on - strand, within HGI48_RS04640 at 974.614 kb on - strand, within HGI48_RS04640 at 974.620 kb on + strand, within HGI48_RS04640 at 974.621 kb on - strand, within HGI48_RS04640 at 974.621 kb on - strand, within HGI48_RS04640 at 974.653 kb on + strand at 974.653 kb on + strand, within HGI48_RS04640 at 974.654 kb on - strand, within HGI48_RS04640 at 974.654 kb on - strand, within HGI48_RS04640 at 974.654 kb on - strand, within HGI48_RS04640 at 974.654 kb on - strand, within HGI48_RS04640 at 974.692 kb on + strand, within HGI48_RS04640 at 974.692 kb on + strand, within HGI48_RS04640 at 974.692 kb on + strand, within HGI48_RS04640 at 974.693 kb on - strand, within HGI48_RS04640 at 974.693 kb on - strand, within HGI48_RS04640 at 974.693 kb on - strand, within HGI48_RS04640 at 974.870 kb on + strand at 974.871 kb on - strand at 974.941 kb on + strand at 975.011 kb on + strand at 975.083 kb on + strand at 975.083 kb on + strand at 975.084 kb on - strand at 975.084 kb on - strand at 975.084 kb on - strand at 975.101 kb on - strand at 975.101 kb on - strand at 975.101 kb on - strand at 975.131 kb on + strand at 975.131 kb on + strand at 975.132 kb on - strand at 975.132 kb on - strand at 975.151 kb on + strand at 975.167 kb on + strand at 975.180 kb on - strand at 975.180 kb on - strand at 975.180 kb on - strand at 975.180 kb on - strand at 975.213 kb on + strand at 975.214 kb on - strand at 975.214 kb on - strand at 975.233 kb on + strand at 975.233 kb on + strand at 975.233 kb on + strand at 975.234 kb on - strand at 975.235 kb on + strand at 975.245 kb on + strand at 975.275 kb on + strand at 975.275 kb on + strand at 975.276 kb on - strand at 975.354 kb on + strand at 975.355 kb on - strand at 975.371 kb on - strand at 975.371 kb on - strand at 975.389 kb on + strand at 975.390 kb on - strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.422 kb on + strand at 975.423 kb on - strand at 975.423 kb on - strand at 975.423 kb on - strand at 975.423 kb on - strand at 975.423 kb on - strand at 975.477 kb on + strand at 975.478 kb on - strand at 975.573 kb on + strand at 975.573 kb on + strand at 975.626 kb on + strand, within HGI48_RS04645 at 975.639 kb on - strand, within HGI48_RS04645 at 975.715 kb on + strand, within HGI48_RS04645 at 975.716 kb on - strand, within HGI48_RS04645 at 975.790 kb on + strand, within HGI48_RS04645 at 975.790 kb on + strand, within HGI48_RS04645 at 975.832 kb on + strand, within HGI48_RS04645 at 975.838 kb on + strand, within HGI48_RS04645 at 975.839 kb on - strand, within HGI48_RS04645 at 975.919 kb on + strand, within HGI48_RS04645 at 975.920 kb on - strand, within HGI48_RS04645 at 975.920 kb on - strand at 975.931 kb on + strand, within HGI48_RS04645 at 975.932 kb on - strand, within HGI48_RS04645 at 975.932 kb on - strand, within HGI48_RS04645 at 975.932 kb on - strand, within HGI48_RS04645 at 975.965 kb on - strand, within HGI48_RS04645 at 976.010 kb on + strand, within HGI48_RS04645 at 976.011 kb on - strand at 976.040 kb on + strand, within HGI48_RS04645 at 976.040 kb on + strand, within HGI48_RS04645 at 976.040 kb on + strand, within HGI48_RS04645 at 976.069 kb on + strand, within HGI48_RS04645
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 971,856 - +1.8 971,895 + +0.3 971,895 + +1.7 971,896 - +0.2 971,909 - +1.7 971,916 + -0.6 971,917 - +1.9 972,014 + +1.3 972,014 + -0.4 972,014 + -0.7 972,014 + -1.9 972,014 + +1.4 972,015 - -1.6 972,063 + +0.9 972,150 + +0.1 972,175 - -0.1 972,210 - +0.4 972,210 - -0.6 972,216 + -0.3 972,216 + +0.5 972,216 + -0.0 972,216 + +2.0 972,217 - -0.1 972,217 - +0.0 972,217 - +0.0 972,217 - -0.3 972,217 - -0.7 972,247 - HGI48_RS04635 0.11 -0.8 972,421 - HGI48_RS04635 0.43 -0.5 972,421 - HGI48_RS04635 0.43 -2.6 972,603 + HGI48_RS04635 0.78 -0.2 972,603 + HGI48_RS04635 0.78 +0.2 972,603 + HGI48_RS04635 0.78 -2.9 972,603 + HGI48_RS04635 0.78 +0.8 972,604 - HGI48_RS04635 0.78 -2.5 972,604 - HGI48_RS04635 0.78 +0.2 972,604 - HGI48_RS04635 0.78 -0.9 972,604 - +3.3 972,610 + HGI48_RS04635 0.79 -1.6 972,713 + +0.4 972,713 + -0.1 972,713 + +0.2 972,713 + -1.4 972,713 + -0.4 972,720 + -0.4 972,720 + -0.9 972,720 + +0.1 972,720 + +0.9 972,720 + -1.6 972,720 + +0.5 972,720 + -0.9 972,721 - +0.4 972,721 - +0.8 972,721 - +1.3 972,721 - -0.4 972,721 - -0.4 973,030 + -0.6 973,111 + HGI48_RS04640 0.13 +0.2 973,111 + HGI48_RS04640 0.13 -1.9 973,111 + HGI48_RS04640 0.13 +1.4 973,111 + HGI48_RS04640 0.13 -0.8 973,111 + HGI48_RS04640 0.13 -2.6 973,111 + HGI48_RS04640 0.13 -0.8 973,112 - HGI48_RS04640 0.13 +1.6 973,202 + HGI48_RS04640 0.17 +0.0 973,203 - HGI48_RS04640 0.17 +0.4 973,203 - HGI48_RS04640 0.17 +1.1 973,203 - HGI48_RS04640 0.17 -0.2 973,203 - HGI48_RS04640 0.17 +1.2 973,317 + HGI48_RS04640 0.22 -1.4 973,317 + HGI48_RS04640 0.22 -1.6 973,317 + HGI48_RS04640 0.22 -0.2 973,318 - HGI48_RS04640 0.22 -0.4 973,420 + HGI48_RS04640 0.26 -0.6 973,420 + HGI48_RS04640 0.26 +0.3 973,421 - HGI48_RS04640 0.26 +1.3 973,421 - HGI48_RS04640 0.26 -2.6 973,421 - HGI48_RS04640 0.26 -0.7 973,421 - HGI48_RS04640 0.26 -0.3 973,495 + HGI48_RS04640 0.30 -0.3 973,495 + HGI48_RS04640 0.30 -0.6 973,584 - HGI48_RS04640 0.34 -1.3 973,584 - HGI48_RS04640 0.34 +1.2 973,584 - HGI48_RS04640 0.34 +0.2 973,588 + HGI48_RS04640 0.34 -0.6 973,853 - HGI48_RS04640 0.46 +0.2 973,877 + HGI48_RS04640 0.47 -1.6 973,878 - HGI48_RS04640 0.47 +0.9 973,878 - HGI48_RS04640 0.47 +1.4 973,880 - HGI48_RS04640 0.47 +0.2 974,119 + HGI48_RS04640 0.57 -0.6 974,120 - HGI48_RS04640 0.57 +0.1 974,120 - HGI48_RS04640 0.57 -0.6 974,132 + HGI48_RS04640 0.58 +0.7 974,133 - HGI48_RS04640 0.58 +0.8 974,133 - HGI48_RS04640 0.58 -0.5 974,251 + HGI48_RS04640 0.63 -0.6 974,252 - HGI48_RS04640 0.63 +0.4 974,252 - HGI48_RS04640 0.63 +0.2 974,614 - HGI48_RS04640 0.79 -1.6 974,614 - HGI48_RS04640 0.79 +0.2 974,620 + HGI48_RS04640 0.79 -1.6 974,621 - HGI48_RS04640 0.80 +0.6 974,621 - HGI48_RS04640 0.80 -1.6 974,653 + +1.9 974,653 + HGI48_RS04640 0.81 +0.6 974,654 - HGI48_RS04640 0.81 +1.4 974,654 - HGI48_RS04640 0.81 -0.4 974,654 - HGI48_RS04640 0.81 -0.3 974,654 - HGI48_RS04640 0.81 +0.8 974,692 + HGI48_RS04640 0.83 +0.4 974,692 + HGI48_RS04640 0.83 -0.9 974,692 + HGI48_RS04640 0.83 +1.8 974,693 - HGI48_RS04640 0.83 +0.9 974,693 - HGI48_RS04640 0.83 +0.0 974,693 - HGI48_RS04640 0.83 -1.3 974,870 + -0.2 974,871 - -0.1 974,941 + -0.4 975,011 + -0.1 975,083 + +0.7 975,083 + +1.0 975,084 - +0.2 975,084 - -0.6 975,084 - +0.7 975,101 - -2.6 975,101 - -2.0 975,101 - -1.6 975,131 + -2.1 975,131 + +0.1 975,132 - +1.4 975,132 - +1.3 975,151 + +0.6 975,167 + +0.9 975,180 - -1.6 975,180 - -0.2 975,180 - -2.6 975,180 - -0.8 975,213 + -0.0 975,214 - -0.1 975,214 - +0.4 975,233 + +0.8 975,233 + +0.3 975,233 + -0.1 975,234 - -0.8 975,235 + +1.0 975,245 + -0.9 975,275 + -0.8 975,275 + -1.7 975,276 - -1.6 975,354 + -0.6 975,355 - -1.6 975,371 - +0.1 975,371 - +0.1 975,389 + +1.3 975,390 - -1.1 975,422 + -0.2 975,422 + +1.0 975,422 + +0.8 975,422 + +2.9 975,422 + +0.1 975,422 + -0.1 975,422 + -0.7 975,422 + +0.1 975,423 - +0.2 975,423 - +0.4 975,423 - -0.3 975,423 - -0.8 975,423 - -0.6 975,477 + +0.4 975,478 - +0.8 975,573 + -1.1 975,573 + +1.9 975,626 + HGI48_RS04645 0.27 +1.0 975,639 - HGI48_RS04645 0.28 -0.1 975,715 + HGI48_RS04645 0.37 -1.1 975,716 - HGI48_RS04645 0.37 -0.3 975,790 + HGI48_RS04645 0.46 +1.8 975,790 + HGI48_RS04645 0.46 +1.3 975,832 + HGI48_RS04645 0.52 +0.0 975,838 + HGI48_RS04645 0.52 +0.4 975,839 - HGI48_RS04645 0.52 -1.1 975,919 + HGI48_RS04645 0.62 -0.4 975,920 - HGI48_RS04645 0.62 -0.0 975,920 - +0.4 975,931 + HGI48_RS04645 0.64 -0.9 975,932 - HGI48_RS04645 0.64 +0.1 975,932 - HGI48_RS04645 0.64 -0.1 975,932 - HGI48_RS04645 0.64 -0.8 975,965 - HGI48_RS04645 0.68 +0.0 976,010 + HGI48_RS04645 0.73 -1.9 976,011 - +2.6 976,040 + HGI48_RS04645 0.77 +0.4 976,040 + HGI48_RS04645 0.77 -0.7 976,040 + HGI48_RS04645 0.77 -0.9 976,069 + HGI48_RS04645 0.80 +0.3
Or see this region's nucleotide sequence