Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04535 and HGI48_RS04540 are separated by 2 nucleotides HGI48_RS04540 and HGI48_RS04545 overlap by 8 nucleotides HGI48_RS04545 and HGI48_RS04550 are separated by 520 nucleotides
HGI48_RS04535: HGI48_RS04535 - MFS transporter, at 950,598 to 951,977
_RS04535
HGI48_RS04540: HGI48_RS04540 - cytochrome c nitrite reductase subunit NrfD, at 951,980 to 952,936
_RS04540
HGI48_RS04545: HGI48_RS04545 - 4Fe-4S dicluster domain-containing protein, at 952,929 to 953,627
_RS04545
HGI48_RS04550: HGI48_RS04550 - alpha/beta hydrolase, at 954,148 to 955,122
_RS04550
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.929 kb on + strand at 951.929 kb on + strand at 951.957 kb on + strand at 952.005 kb on + strand at 952.005 kb on + strand at 952.071 kb on + strand at 952.072 kb on - strand at 952.127 kb on - strand, within HGI48_RS04540 at 952.141 kb on + strand, within HGI48_RS04540 at 952.142 kb on - strand, within HGI48_RS04540 at 952.406 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.485 kb on - strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.502 kb on + strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.503 kb on - strand, within HGI48_RS04540 at 952.504 kb on + strand at 952.527 kb on - strand, within HGI48_RS04540 at 952.538 kb on + strand, within HGI48_RS04540 at 952.539 kb on - strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.596 kb on + strand, within HGI48_RS04540 at 952.623 kb on - strand, within HGI48_RS04540 at 952.632 kb on + strand at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.632 kb on + strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.633 kb on - strand, within HGI48_RS04540 at 952.680 kb on + strand at 952.680 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.695 kb on + strand, within HGI48_RS04540 at 952.784 kb on - strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.798 kb on + strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.799 kb on - strand, within HGI48_RS04540 at 952.821 kb on + strand, within HGI48_RS04540 at 952.881 kb on + strand at 952.881 kb on + strand at 952.882 kb on - strand at 952.951 kb on + strand at 952.951 kb on + strand at 953.008 kb on + strand at 953.009 kb on - strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.012 kb on + strand, within HGI48_RS04545 at 953.013 kb on - strand, within HGI48_RS04545 at 953.013 kb on - strand, within HGI48_RS04545 at 953.013 kb on - strand at 953.013 kb on - strand at 953.039 kb on + strand, within HGI48_RS04545 at 953.040 kb on - strand, within HGI48_RS04545 at 953.154 kb on - strand, within HGI48_RS04545 at 953.154 kb on - strand, within HGI48_RS04545 at 953.180 kb on + strand, within HGI48_RS04545 at 953.180 kb on + strand, within HGI48_RS04545 at 953.181 kb on - strand, within HGI48_RS04545 at 953.360 kb on + strand, within HGI48_RS04545 at 953.360 kb on + strand at 953.360 kb on + strand, within HGI48_RS04545 at 953.360 kb on + strand, within HGI48_RS04545 at 953.361 kb on - strand at 953.479 kb on - strand, within HGI48_RS04545 at 953.479 kb on - strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.493 kb on + strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.494 kb on - strand, within HGI48_RS04545 at 953.500 kb on + strand, within HGI48_RS04545 at 953.501 kb on - strand, within HGI48_RS04545 at 953.501 kb on - strand, within HGI48_RS04545 at 953.600 kb on + strand at 953.601 kb on - strand at 953.668 kb on + strand at 953.761 kb on + strand at 953.842 kb on + strand at 954.000 kb on - strand at 954.065 kb on + strand at 954.083 kb on - strand at 954.138 kb on + strand at 954.150 kb on - strand at 954.245 kb on + strand at 954.245 kb on + strand at 954.248 kb on + strand, within HGI48_RS04550 at 954.248 kb on + strand, within HGI48_RS04550 at 954.248 kb on + strand, within HGI48_RS04550 at 954.249 kb on - strand at 954.249 kb on - strand, within HGI48_RS04550 at 954.249 kb on - strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand at 954.368 kb on + strand, within HGI48_RS04550 at 954.368 kb on + strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.369 kb on - strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand, within HGI48_RS04550 at 954.493 kb on + strand at 954.494 kb on - strand, within HGI48_RS04550 at 954.494 kb on - strand, within HGI48_RS04550 at 954.542 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.562 kb on + strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550 at 954.563 kb on - strand, within HGI48_RS04550
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 951,929 + -0.9 951,929 + +0.5 951,957 + +0.2 952,005 + -0.1 952,005 + -0.5 952,071 + +0.0 952,072 - +1.5 952,127 - HGI48_RS04540 0.15 -0.5 952,141 + HGI48_RS04540 0.17 -1.1 952,142 - HGI48_RS04540 0.17 +0.2 952,406 - HGI48_RS04540 0.45 -2.9 952,485 - HGI48_RS04540 0.53 -0.5 952,485 - HGI48_RS04540 0.53 -0.5 952,485 - HGI48_RS04540 0.53 +0.2 952,502 + HGI48_RS04540 0.55 -0.0 952,502 + HGI48_RS04540 0.55 -0.5 952,502 + HGI48_RS04540 0.55 +0.0 952,502 + HGI48_RS04540 0.55 -1.1 952,502 + HGI48_RS04540 0.55 +0.2 952,502 + HGI48_RS04540 0.55 +0.7 952,503 - HGI48_RS04540 0.55 -3.4 952,503 - HGI48_RS04540 0.55 -1.5 952,503 - HGI48_RS04540 0.55 -0.2 952,504 + +2.3 952,527 - HGI48_RS04540 0.57 -0.5 952,538 + HGI48_RS04540 0.58 -1.0 952,539 - HGI48_RS04540 0.58 +0.5 952,596 + HGI48_RS04540 0.64 -2.2 952,596 + HGI48_RS04540 0.64 -0.0 952,623 - HGI48_RS04540 0.67 -0.4 952,632 + -0.1 952,632 + HGI48_RS04540 0.68 +0.2 952,632 + HGI48_RS04540 0.68 -2.4 952,632 + HGI48_RS04540 0.68 -0.5 952,633 - HGI48_RS04540 0.68 +0.5 952,633 - HGI48_RS04540 0.68 -0.2 952,633 - HGI48_RS04540 0.68 -1.5 952,633 - -0.1 952,633 - HGI48_RS04540 0.68 -1.5 952,633 - HGI48_RS04540 0.68 -0.1 952,633 - HGI48_RS04540 0.68 +0.2 952,680 + +0.5 952,680 + HGI48_RS04540 0.73 +1.2 952,695 + HGI48_RS04540 0.75 -1.4 952,695 + HGI48_RS04540 0.75 +1.8 952,784 - HGI48_RS04540 0.84 -0.1 952,798 + HGI48_RS04540 0.85 +0.5 952,798 + HGI48_RS04540 0.85 -0.5 952,799 - HGI48_RS04540 0.86 -0.2 952,799 - HGI48_RS04540 0.86 -1.5 952,821 + HGI48_RS04540 0.88 -0.5 952,881 + -0.4 952,881 + -0.8 952,882 - -0.0 952,951 + -0.2 952,951 + +0.6 953,008 + -1.1 953,009 - HGI48_RS04545 0.11 -0.7 953,012 + HGI48_RS04545 0.12 +1.0 953,012 + HGI48_RS04545 0.12 -0.7 953,012 + HGI48_RS04545 0.12 -2.1 953,012 + HGI48_RS04545 0.12 -2.4 953,013 - HGI48_RS04545 0.12 +0.7 953,013 - HGI48_RS04545 0.12 +0.2 953,013 - -1.1 953,013 - -0.5 953,039 + HGI48_RS04545 0.16 -0.8 953,040 - HGI48_RS04545 0.16 +0.0 953,154 - HGI48_RS04545 0.32 -0.3 953,154 - HGI48_RS04545 0.32 -0.5 953,180 + HGI48_RS04545 0.36 -1.5 953,180 + HGI48_RS04545 0.36 -0.2 953,181 - HGI48_RS04545 0.36 +0.8 953,360 + HGI48_RS04545 0.62 +0.7 953,360 + +0.5 953,360 + HGI48_RS04545 0.62 +0.5 953,360 + HGI48_RS04545 0.62 +0.2 953,361 - +1.8 953,479 - HGI48_RS04545 0.79 +1.0 953,479 - HGI48_RS04545 0.79 -0.5 953,493 + HGI48_RS04545 0.81 -0.5 953,493 + HGI48_RS04545 0.81 +0.5 953,493 + HGI48_RS04545 0.81 +1.3 953,494 - HGI48_RS04545 0.81 -0.0 953,494 - HGI48_RS04545 0.81 -0.1 953,494 - HGI48_RS04545 0.81 -0.1 953,494 - HGI48_RS04545 0.81 +0.5 953,500 + HGI48_RS04545 0.82 +0.7 953,501 - HGI48_RS04545 0.82 -2.5 953,501 - HGI48_RS04545 0.82 +0.9 953,600 + -1.1 953,601 - -2.5 953,668 + -2.0 953,761 + +1.7 953,842 + +1.2 954,000 - +0.2 954,065 + +1.6 954,083 - -1.5 954,138 + -0.1 954,150 - +0.0 954,245 + +1.2 954,245 + +0.5 954,248 + HGI48_RS04550 0.10 +1.2 954,248 + HGI48_RS04550 0.10 -0.1 954,248 + HGI48_RS04550 0.10 +0.2 954,249 - +1.2 954,249 - HGI48_RS04550 0.10 +0.4 954,249 - HGI48_RS04550 0.10 -2.7 954,368 + HGI48_RS04550 0.23 -0.5 954,368 + HGI48_RS04550 0.23 -0.8 954,368 + HGI48_RS04550 0.23 -1.0 954,368 + HGI48_RS04550 0.23 -1.3 954,368 + HGI48_RS04550 0.23 -0.3 954,368 + -0.5 954,368 + HGI48_RS04550 0.23 -0.3 954,368 + HGI48_RS04550 0.23 +1.0 954,369 - HGI48_RS04550 0.23 +0.5 954,369 - HGI48_RS04550 0.23 -1.5 954,369 - HGI48_RS04550 0.23 +0.5 954,369 - HGI48_RS04550 0.23 +0.6 954,369 - HGI48_RS04550 0.23 -0.5 954,493 + HGI48_RS04550 0.35 -2.5 954,493 + HGI48_RS04550 0.35 -1.7 954,493 + HGI48_RS04550 0.35 -0.1 954,493 + +1.5 954,494 - HGI48_RS04550 0.35 +0.2 954,494 - HGI48_RS04550 0.35 -0.9 954,542 + HGI48_RS04550 0.40 -0.2 954,562 + HGI48_RS04550 0.42 +0.5 954,562 + HGI48_RS04550 0.42 +0.5 954,563 - HGI48_RS04550 0.43 -0.2 954,563 - HGI48_RS04550 0.43 -0.3
Or see this region's nucleotide sequence