Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03330

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03320 and HGI48_RS03325 are separated by 70 nucleotidesHGI48_RS03325 and HGI48_RS03330 are separated by 73 nucleotidesHGI48_RS03330 and HGI48_RS03335 overlap by 32 nucleotidesHGI48_RS03335 and HGI48_RS03340 are separated by 188 nucleotides HGI48_RS03320: HGI48_RS03320 - phosphopentomutase, at 700,438 to 701,661 _RS03320 HGI48_RS03325: HGI48_RS03325 - purine-nucleoside phosphorylase, at 701,732 to 702,457 _RS03325 HGI48_RS03330: HGI48_RS03330 - ribosomal protein S18-alanine N-acetyltransferase, at 702,531 to 702,974 _RS03330 HGI48_RS03335: HGI48_RS03335 - DNA polymerase III subunit psi, at 702,943 to 703,362 _RS03335 HGI48_RS03340: HGI48_RS03340 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 703,551 to 704,579 _RS03340 Position (kb) 702 703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 701.813 kb on + strand, within HGI48_RS03325at 701.814 kb on - strand, within HGI48_RS03325at 701.867 kb on - strand, within HGI48_RS03325at 701.888 kb on + strand, within HGI48_RS03325at 701.889 kb on - strand, within HGI48_RS03325at 701.889 kb on - strand, within HGI48_RS03325at 701.949 kb on - strand, within HGI48_RS03325at 702.095 kb on - strandat 702.212 kb on + strand, within HGI48_RS03325at 702.212 kb on + strandat 702.290 kb on + strand, within HGI48_RS03325at 702.291 kb on - strand, within HGI48_RS03325at 702.349 kb on + strand, within HGI48_RS03325at 702.466 kb on + strandat 702.467 kb on - strandat 702.469 kb on + strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.470 kb on - strandat 702.506 kb on + strandat 702.506 kb on + strandat 702.506 kb on + strandat 702.507 kb on - strandat 702.507 kb on - strandat 702.587 kb on - strand, within HGI48_RS03330at 702.589 kb on + strand, within HGI48_RS03330at 702.590 kb on - strand, within HGI48_RS03330at 702.590 kb on - strand, within HGI48_RS03330at 702.632 kb on - strand, within HGI48_RS03330at 702.675 kb on + strand, within HGI48_RS03330at 702.675 kb on + strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.676 kb on - strand, within HGI48_RS03330at 702.782 kb on + strandat 702.782 kb on + strand, within HGI48_RS03330at 702.783 kb on - strand, within HGI48_RS03330at 702.783 kb on - strand, within HGI48_RS03330at 702.795 kb on + strand, within HGI48_RS03330at 702.796 kb on - strand, within HGI48_RS03330at 702.798 kb on + strand, within HGI48_RS03330at 702.798 kb on + strandat 702.798 kb on + strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.799 kb on - strand, within HGI48_RS03330at 702.814 kb on + strand, within HGI48_RS03330at 702.814 kb on + strand, within HGI48_RS03330at 702.815 kb on - strand, within HGI48_RS03330at 702.913 kb on - strand, within HGI48_RS03330at 703.368 kb on - strandat 703.401 kb on + strandat 703.420 kb on + strandat 703.421 kb on - strandat 703.421 kb on - strandat 703.421 kb on - strandat 703.436 kb on + strandat 703.436 kb on + strandat 703.437 kb on - strandat 703.482 kb on - strandat 703.514 kb on + strandat 703.514 kb on + strandat 703.514 kb on + strandat 703.514 kb on + strandat 703.515 kb on - strandat 703.515 kb on - strandat 703.515 kb on - strandat 703.516 kb on + strandat 703.516 kb on + strandat 703.516 kb on + strandat 703.517 kb on - strandat 703.517 kb on - strandat 703.517 kb on - strandat 703.517 kb on - strandat 703.582 kb on + strandat 703.583 kb on - strandat 703.643 kb on + strandat 703.643 kb on + strandat 703.644 kb on - strandat 703.644 kb on - strandat 703.644 kb on - strandat 703.681 kb on + strandat 703.681 kb on + strand, within HGI48_RS03340at 703.681 kb on + strand, within HGI48_RS03340at 703.682 kb on - strand, within HGI48_RS03340at 703.682 kb on - strand, within HGI48_RS03340at 703.696 kb on - strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.794 kb on + strand, within HGI48_RS03340at 703.795 kb on - strand, within HGI48_RS03340at 703.795 kb on - strandat 703.798 kb on - strand, within HGI48_RS03340at 703.798 kb on - strandat 703.798 kb on - strand, within HGI48_RS03340at 703.946 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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701,813 + HGI48_RS03325 0.11 -0.6
701,814 - HGI48_RS03325 0.11 +1.2
701,867 - HGI48_RS03325 0.19 +0.8
701,888 + HGI48_RS03325 0.21 -1.2
701,889 - HGI48_RS03325 0.22 -1.6
701,889 - HGI48_RS03325 0.22 -2.9
701,949 - HGI48_RS03325 0.30 +0.0
702,095 - +1.4
702,212 + HGI48_RS03325 0.66 +1.4
702,212 + -0.1
702,290 + HGI48_RS03325 0.77 -0.8
702,291 - HGI48_RS03325 0.77 -0.3
702,349 + HGI48_RS03325 0.85 +1.6
702,466 + +0.2
702,467 - -1.0
702,469 + +0.8
702,470 - -1.3
702,470 - +0.1
702,470 - -0.5
702,470 - -0.1
702,506 + +1.1
702,506 + +0.0
702,506 + -1.0
702,507 - -2.4
702,507 - -1.9
702,587 - HGI48_RS03330 0.13 -0.2
702,589 + HGI48_RS03330 0.13 +0.9
702,590 - HGI48_RS03330 0.13 +0.8
702,590 - HGI48_RS03330 0.13 -0.6
702,632 - HGI48_RS03330 0.23 -2.1
702,675 + HGI48_RS03330 0.32 -0.3
702,675 + HGI48_RS03330 0.32 -2.1
702,676 - HGI48_RS03330 0.33 -1.7
702,676 - HGI48_RS03330 0.33 -1.6
702,676 - HGI48_RS03330 0.33 -0.1
702,782 + -0.6
702,782 + HGI48_RS03330 0.57 -2.1
702,783 - HGI48_RS03330 0.57 -0.8
702,783 - HGI48_RS03330 0.57 -0.4
702,795 + HGI48_RS03330 0.59 -1.4
702,796 - HGI48_RS03330 0.60 -0.8
702,798 + HGI48_RS03330 0.60 +0.0
702,798 + +0.4
702,798 + HGI48_RS03330 0.60 -2.0
702,799 - HGI48_RS03330 0.60 -0.3
702,799 - HGI48_RS03330 0.60 +1.3
702,799 - HGI48_RS03330 0.60 +0.6
702,814 + HGI48_RS03330 0.64 +1.1
702,814 + HGI48_RS03330 0.64 -1.3
702,815 - HGI48_RS03330 0.64 -0.2
702,913 - HGI48_RS03330 0.86 -0.9
703,368 - -2.9
703,401 + +0.8
703,420 + +0.5
703,421 - +2.3
703,421 - -2.1
703,421 - +0.2
703,436 + +1.2
703,436 + -2.6
703,437 - -1.6
703,482 - -1.4
703,514 + +0.9
703,514 + -2.1
703,514 + +0.1
703,514 + +1.0
703,515 - -0.1
703,515 - -0.1
703,515 - +0.8
703,516 + +0.1
703,516 + -0.5
703,516 + -1.1
703,517 - +1.7
703,517 - -0.3
703,517 - -0.5
703,517 - +0.4
703,582 + +0.4
703,583 - +0.2
703,643 + -1.1
703,643 + -0.1
703,644 - -1.1
703,644 - -0.6
703,644 - -1.1
703,681 + -0.6
703,681 + HGI48_RS03340 0.13 +0.4
703,681 + HGI48_RS03340 0.13 +0.7
703,682 - HGI48_RS03340 0.13 +0.3
703,682 - HGI48_RS03340 0.13 -0.4
703,696 - HGI48_RS03340 0.14 +1.4
703,794 + HGI48_RS03340 0.24 +1.3
703,794 + HGI48_RS03340 0.24 +0.6
703,794 + HGI48_RS03340 0.24 -0.6
703,794 + HGI48_RS03340 0.24 -0.9
703,794 + HGI48_RS03340 0.24 -0.4
703,794 + HGI48_RS03340 0.24 -1.0
703,794 + HGI48_RS03340 0.24 +1.3
703,795 - HGI48_RS03340 0.24 +0.4
703,795 - +2.3
703,798 - HGI48_RS03340 0.24 +0.8
703,798 - +1.4
703,798 - HGI48_RS03340 0.24 +0.1
703,946 + +1.7

Or see this region's nucleotide sequence