Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03290 and HGI48_RS03295 are separated by 318 nucleotides HGI48_RS03295 and HGI48_RS03300 overlap by 7 nucleotides HGI48_RS03300 and HGI48_RS03305 overlap by 14 nucleotides HGI48_RS03305 and HGI48_RS03310 are separated by 283 nucleotides
HGI48_RS03290: HGI48_RS03290 - U32 family peptidase, at 695,264 to 696,262
_RS03290
HGI48_RS03295: HGI48_RS03295 - SCP2 domain-containing protein, at 696,581 to 697,105
_RS03295
HGI48_RS03300: HGI48_RS03300 - N-acetyltransferase, at 697,099 to 697,602
_RS03300
HGI48_RS03305: HGI48_RS03305 - GIY-YIG nuclease family protein, at 697,589 to 697,891
_RS03305
HGI48_RS03310: HGI48_RS03310 - deoxyribose-phosphate aldolase, at 698,175 to 698,954
_RS03310
Position (kb) 697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 696.105 kb on + strand, within HGI48_RS03290 at 696.106 kb on - strand, within HGI48_RS03290 at 696.106 kb on - strand, within HGI48_RS03290 at 696.130 kb on + strand, within HGI48_RS03290 at 696.189 kb on + strand at 696.189 kb on + strand at 696.189 kb on + strand at 696.190 kb on - strand at 696.190 kb on - strand at 696.207 kb on + strand at 696.225 kb on - strand at 696.225 kb on - strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.266 kb on + strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.267 kb on - strand at 696.322 kb on + strand at 696.323 kb on - strand at 696.411 kb on + strand at 696.468 kb on - strand at 696.489 kb on + strand at 696.490 kb on - strand at 696.497 kb on + strand at 696.497 kb on + strand at 696.497 kb on + strand at 696.498 kb on - strand at 696.498 kb on - strand at 696.498 kb on - strand at 696.535 kb on - strand at 696.566 kb on - strand at 696.574 kb on + strand at 696.574 kb on + strand at 696.634 kb on + strand at 696.634 kb on + strand, within HGI48_RS03295 at 696.634 kb on + strand, within HGI48_RS03295 at 696.635 kb on - strand, within HGI48_RS03295 at 696.826 kb on + strand, within HGI48_RS03295 at 696.827 kb on - strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.959 kb on + strand, within HGI48_RS03295 at 696.960 kb on - strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.997 kb on + strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 696.998 kb on - strand, within HGI48_RS03295 at 697.057 kb on - strand at 697.095 kb on + strand at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.259 kb on + strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.260 kb on - strand, within HGI48_RS03300 at 697.265 kb on - strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.378 kb on + strand, within HGI48_RS03300 at 697.379 kb on - strand, within HGI48_RS03300 at 697.379 kb on - strand at 697.444 kb on + strand, within HGI48_RS03300 at 697.444 kb on + strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.445 kb on - strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.447 kb on + strand, within HGI48_RS03300 at 697.448 kb on - strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.489 kb on + strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.490 kb on - strand, within HGI48_RS03300 at 697.528 kb on + strand, within HGI48_RS03300 at 697.577 kb on - strand at 697.622 kb on - strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand, within HGI48_RS03305 at 697.731 kb on + strand at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand, within HGI48_RS03305 at 697.732 kb on - strand at 697.830 kb on + strand at 697.830 kb on + strand, within HGI48_RS03305 at 697.830 kb on + strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.831 kb on - strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.860 kb on + strand, within HGI48_RS03305 at 697.861 kb on - strand at 697.871 kb on + strand at 697.921 kb on + strand at 697.926 kb on + strand at 697.926 kb on + strand at 697.935 kb on - strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.948 kb on + strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.949 kb on - strand at 697.954 kb on - strand at 697.954 kb on - strand at 697.981 kb on + strand at 697.981 kb on + strand at 697.982 kb on - strand at 698.000 kb on + strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.001 kb on - strand at 698.039 kb on - strand at 698.058 kb on + strand at 698.059 kb on - strand at 698.059 kb on - strand at 698.066 kb on + strand at 698.080 kb on + strand at 698.108 kb on + strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.109 kb on - strand at 698.124 kb on + strand at 698.125 kb on - strand at 698.130 kb on + strand at 698.130 kb on + strand at 698.131 kb on - strand at 698.174 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.186 kb on - strand at 698.225 kb on - strand at 698.225 kb on - strand at 698.283 kb on - strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.315 kb on + strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.316 kb on - strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.319 kb on + strand, within HGI48_RS03310 at 698.576 kb on - strand, within HGI48_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 696,105 + HGI48_RS03290 0.84 -1.5 696,106 - HGI48_RS03290 0.84 +0.4 696,106 - HGI48_RS03290 0.84 -1.4 696,130 + HGI48_RS03290 0.87 +0.7 696,189 + +0.4 696,189 + -0.9 696,189 + +0.7 696,190 - -0.6 696,190 - -0.6 696,207 + +0.6 696,225 - -0.5 696,225 - -0.2 696,266 + -2.6 696,266 + -1.9 696,266 + -1.6 696,266 + +0.1 696,266 + -0.6 696,267 - -2.1 696,267 - -0.1 696,267 - +2.6 696,267 - -0.4 696,267 - +0.5 696,267 - -1.5 696,267 - -1.0 696,322 + +0.1 696,323 - +0.1 696,411 + -0.2 696,468 - +1.3 696,489 + +0.1 696,490 - +0.4 696,497 + +1.4 696,497 + -1.4 696,497 + -2.6 696,498 - -0.8 696,498 - +0.0 696,498 - +0.1 696,535 - +1.6 696,566 - -1.9 696,574 + -0.3 696,574 + -0.4 696,634 + -1.1 696,634 + HGI48_RS03295 0.10 -0.1 696,634 + HGI48_RS03295 0.10 +0.6 696,635 - HGI48_RS03295 0.10 -0.3 696,826 + HGI48_RS03295 0.47 +0.9 696,827 - HGI48_RS03295 0.47 -1.6 696,959 + HGI48_RS03295 0.72 +0.1 696,959 + HGI48_RS03295 0.72 +1.9 696,959 + HGI48_RS03295 0.72 +0.2 696,959 + HGI48_RS03295 0.72 +0.4 696,959 + HGI48_RS03295 0.72 -1.0 696,960 - HGI48_RS03295 0.72 +0.2 696,997 + HGI48_RS03295 0.79 +0.7 696,997 + HGI48_RS03295 0.79 -1.1 696,997 + HGI48_RS03295 0.79 -0.2 696,998 - HGI48_RS03295 0.79 +1.8 696,998 - HGI48_RS03295 0.79 -0.1 696,998 - HGI48_RS03295 0.79 +1.6 697,057 - -0.5 697,095 + +0.7 697,259 + HGI48_RS03300 0.32 +0.1 697,259 + HGI48_RS03300 0.32 -0.3 697,259 + HGI48_RS03300 0.32 -0.8 697,260 - HGI48_RS03300 0.32 +0.3 697,260 - HGI48_RS03300 0.32 +1.8 697,260 - HGI48_RS03300 0.32 -0.4 697,260 - HGI48_RS03300 0.32 -1.7 697,265 - HGI48_RS03300 0.33 +0.1 697,378 + HGI48_RS03300 0.55 -2.6 697,378 + HGI48_RS03300 0.55 +0.6 697,378 + HGI48_RS03300 0.55 -2.7 697,379 - HGI48_RS03300 0.56 -0.1 697,379 - +0.4 697,444 + HGI48_RS03300 0.68 +0.1 697,444 + HGI48_RS03300 0.68 +0.1 697,445 - HGI48_RS03300 0.69 +0.4 697,445 - HGI48_RS03300 0.69 +1.9 697,447 + HGI48_RS03300 0.69 +0.3 697,447 + HGI48_RS03300 0.69 +1.0 697,447 + HGI48_RS03300 0.69 +0.0 697,448 - HGI48_RS03300 0.69 -2.1 697,489 + HGI48_RS03300 0.77 +0.1 697,489 + HGI48_RS03300 0.77 +0.6 697,489 + HGI48_RS03300 0.77 +0.9 697,489 + HGI48_RS03300 0.77 -1.9 697,490 - HGI48_RS03300 0.78 +0.7 697,490 - HGI48_RS03300 0.78 -2.7 697,490 - HGI48_RS03300 0.78 -0.1 697,528 + HGI48_RS03300 0.85 +0.4 697,577 - -0.5 697,622 - HGI48_RS03305 0.11 -0.8 697,731 + HGI48_RS03305 0.47 -0.6 697,731 + HGI48_RS03305 0.47 +0.8 697,731 + HGI48_RS03305 0.47 -1.1 697,731 + HGI48_RS03305 0.47 -0.6 697,731 + HGI48_RS03305 0.47 +0.6 697,731 + -0.1 697,732 - HGI48_RS03305 0.47 +1.6 697,732 - HGI48_RS03305 0.47 +0.7 697,732 - HGI48_RS03305 0.47 +1.3 697,732 - +2.3 697,830 + +3.0 697,830 + HGI48_RS03305 0.80 +0.1 697,830 + HGI48_RS03305 0.80 +0.6 697,831 - HGI48_RS03305 0.80 -1.9 697,831 - HGI48_RS03305 0.80 +0.4 697,860 + HGI48_RS03305 0.89 -0.0 697,860 + HGI48_RS03305 0.89 +0.3 697,861 - -0.1 697,871 + -0.6 697,921 + -1.1 697,926 + -0.1 697,926 + -0.1 697,935 - +1.0 697,948 + +0.3 697,948 + +0.1 697,948 + -1.1 697,948 + -1.4 697,948 + +0.2 697,949 - -0.8 697,949 - -1.7 697,949 - -0.1 697,949 - -0.3 697,954 - +0.3 697,954 - -1.0 697,981 + +0.5 697,981 + -0.1 697,982 - -0.0 698,000 + +0.6 698,001 - -0.6 698,001 - -1.9 698,001 - -0.0 698,039 - -0.8 698,058 + -0.4 698,059 - +0.2 698,059 - -1.7 698,066 + +1.3 698,080 + -0.3 698,108 + -0.1 698,109 - -1.6 698,109 - +1.2 698,109 - +0.9 698,124 + +0.9 698,125 - +0.2 698,130 + -0.0 698,130 + -0.8 698,131 - -2.9 698,174 + -0.6 698,175 - -0.8 698,175 - +0.4 698,175 - +0.4 698,186 - -2.1 698,225 - +0.4 698,225 - -0.1 698,283 - HGI48_RS03310 0.14 +0.3 698,315 + HGI48_RS03310 0.18 +0.1 698,315 + HGI48_RS03310 0.18 -0.3 698,316 - HGI48_RS03310 0.18 -0.8 698,316 - HGI48_RS03310 0.18 +1.0 698,316 - HGI48_RS03310 0.18 -2.4 698,316 - HGI48_RS03310 0.18 -1.9 698,319 + HGI48_RS03310 0.18 -1.6 698,319 + HGI48_RS03310 0.18 -3.4 698,319 + HGI48_RS03310 0.18 +0.0 698,576 - HGI48_RS03310 0.51 -1.9
Or see this region's nucleotide sequence