Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02590 and HGI48_RS02595 are separated by 447 nucleotides HGI48_RS02595 and HGI48_RS02600 overlap by 11 nucleotides
HGI48_RS02590: HGI48_RS02590 - L-talarate/galactarate dehydratase, at 560,150 to 561,349
_RS02590
HGI48_RS02595: HGI48_RS02595 - undecaprenyl-phosphate glucose phosphotransferase, at 561,797 to 563,203
_RS02595
HGI48_RS02600: HGI48_RS02600 - outer membrane beta-barrel protein, at 563,193 to 564,479
_RS02600
Position (kb) 561
562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.921 kb on + strand, within HGI48_RS02590 at 560.928 kb on + strand, within HGI48_RS02590 at 560.929 kb on - strand, within HGI48_RS02590 at 560.929 kb on - strand, within HGI48_RS02590 at 560.929 kb on - strand, within HGI48_RS02590 at 561.147 kb on + strand, within HGI48_RS02590 at 561.148 kb on - strand, within HGI48_RS02590 at 561.148 kb on - strand, within HGI48_RS02590 at 561.148 kb on - strand at 561.220 kb on + strand, within HGI48_RS02590 at 561.283 kb on + strand at 561.338 kb on + strand at 561.396 kb on + strand at 561.397 kb on - strand at 561.397 kb on - strand at 561.399 kb on - strand at 561.418 kb on + strand at 561.418 kb on + strand at 561.418 kb on + strand at 561.418 kb on + strand at 561.419 kb on - strand at 561.419 kb on - strand at 561.419 kb on - strand at 561.419 kb on - strand at 561.422 kb on + strand at 561.422 kb on + strand at 561.422 kb on + strand at 561.423 kb on - strand at 561.438 kb on - strand at 561.438 kb on - strand at 561.438 kb on - strand at 561.456 kb on - strand at 561.460 kb on - strand at 561.474 kb on - strand at 561.474 kb on - strand at 561.478 kb on - strand at 561.703 kb on + strand at 561.738 kb on + strand at 561.740 kb on + strand at 561.805 kb on + strand at 561.988 kb on - strand, within HGI48_RS02595 at 561.988 kb on - strand, within HGI48_RS02595 at 561.988 kb on - strand, within HGI48_RS02595 at 561.989 kb on + strand, within HGI48_RS02595 at 561.990 kb on - strand, within HGI48_RS02595 at 561.990 kb on - strand, within HGI48_RS02595 at 561.990 kb on - strand, within HGI48_RS02595 at 562.101 kb on - strand, within HGI48_RS02595 at 562.101 kb on - strand, within HGI48_RS02595 at 562.136 kb on + strand, within HGI48_RS02595 at 562.137 kb on - strand, within HGI48_RS02595 at 562.160 kb on + strand, within HGI48_RS02595 at 562.163 kb on - strand, within HGI48_RS02595 at 562.163 kb on - strand, within HGI48_RS02595 at 562.213 kb on + strand, within HGI48_RS02595 at 562.251 kb on + strand, within HGI48_RS02595 at 562.295 kb on + strand, within HGI48_RS02595 at 562.363 kb on + strand, within HGI48_RS02595 at 562.433 kb on + strand, within HGI48_RS02595 at 562.433 kb on + strand, within HGI48_RS02595 at 562.433 kb on + strand, within HGI48_RS02595 at 562.433 kb on + strand, within HGI48_RS02595 at 562.434 kb on - strand, within HGI48_RS02595 at 562.434 kb on - strand, within HGI48_RS02595 at 562.458 kb on + strand, within HGI48_RS02595 at 562.459 kb on - strand, within HGI48_RS02595 at 562.498 kb on + strand, within HGI48_RS02595 at 562.498 kb on + strand, within HGI48_RS02595 at 562.499 kb on - strand, within HGI48_RS02595 at 562.507 kb on + strand at 562.508 kb on - strand, within HGI48_RS02595 at 562.512 kb on - strand, within HGI48_RS02595 at 562.512 kb on - strand at 562.512 kb on - strand at 562.537 kb on + strand at 562.548 kb on + strand, within HGI48_RS02595 at 562.564 kb on + strand, within HGI48_RS02595 at 562.571 kb on - strand, within HGI48_RS02595 at 562.573 kb on + strand, within HGI48_RS02595 at 562.573 kb on + strand at 562.705 kb on + strand at 562.705 kb on + strand, within HGI48_RS02595 at 562.705 kb on + strand, within HGI48_RS02595 at 562.709 kb on - strand, within HGI48_RS02595 at 562.917 kb on + strand, within HGI48_RS02595 at 562.918 kb on - strand, within HGI48_RS02595 at 562.918 kb on - strand, within HGI48_RS02595 at 562.918 kb on - strand at 562.918 kb on - strand, within HGI48_RS02595 at 562.918 kb on - strand, within HGI48_RS02595 at 562.992 kb on + strand, within HGI48_RS02595 at 563.000 kb on + strand, within HGI48_RS02595 at 563.015 kb on - strand, within HGI48_RS02595 at 563.051 kb on - strand, within HGI48_RS02595 at 563.106 kb on - strand at 563.112 kb on + strand at 563.112 kb on + strand at 563.112 kb on + strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.113 kb on - strand at 563.117 kb on + strand at 563.117 kb on + strand at 563.117 kb on + strand at 563.117 kb on + strand at 563.117 kb on + strand at 563.118 kb on - strand at 563.118 kb on - strand at 563.118 kb on - strand at 563.118 kb on - strand at 563.118 kb on - strand at 563.118 kb on - strand at 563.156 kb on - strand at 563.161 kb on + strand at 563.183 kb on - strand at 563.207 kb on - strand at 563.215 kb on + strand at 563.230 kb on + strand at 563.230 kb on + strand at 563.340 kb on + strand at 563.340 kb on + strand, within HGI48_RS02600 at 563.341 kb on - strand, within HGI48_RS02600 at 563.430 kb on + strand, within HGI48_RS02600 at 563.442 kb on + strand, within HGI48_RS02600 at 563.442 kb on + strand, within HGI48_RS02600 at 563.443 kb on - strand, within HGI48_RS02600 at 563.443 kb on - strand, within HGI48_RS02600 at 563.464 kb on - strand, within HGI48_RS02600 at 563.483 kb on + strand, within HGI48_RS02600 at 563.487 kb on + strand, within HGI48_RS02600 at 563.488 kb on - strand, within HGI48_RS02600 at 563.488 kb on - strand, within HGI48_RS02600 at 563.510 kb on + strand, within HGI48_RS02600 at 563.654 kb on + strand, within HGI48_RS02600 at 563.666 kb on + strand, within HGI48_RS02600 at 563.677 kb on + strand, within HGI48_RS02600 at 563.677 kb on + strand, within HGI48_RS02600 at 563.688 kb on + strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.689 kb on - strand, within HGI48_RS02600 at 563.747 kb on + strand, within HGI48_RS02600 at 563.750 kb on - strand, within HGI48_RS02600 at 563.768 kb on + strand at 563.768 kb on + strand at 563.790 kb on + strand, within HGI48_RS02600 at 563.796 kb on + strand, within HGI48_RS02600 at 563.797 kb on - strand, within HGI48_RS02600 at 563.799 kb on - strand, within HGI48_RS02600 at 563.799 kb on - strand at 563.842 kb on + strand, within HGI48_RS02600 at 563.885 kb on + strand, within HGI48_RS02600 at 563.905 kb on - strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.937 kb on + strand, within HGI48_RS02600 at 563.938 kb on - strand, within HGI48_RS02600 at 563.940 kb on + strand at 563.941 kb on - strand at 563.949 kb on + strand, within HGI48_RS02600 at 564.007 kb on + strand, within HGI48_RS02600 at 564.009 kb on + strand, within HGI48_RS02600 at 564.009 kb on + strand at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand, within HGI48_RS02600 at 564.010 kb on - strand at 564.109 kb on + strand, within HGI48_RS02600 at 564.109 kb on + strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.110 kb on - strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.113 kb on + strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.114 kb on - strand, within HGI48_RS02600 at 564.168 kb on - strand, within HGI48_RS02600 at 564.172 kb on - strand, within HGI48_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 560,921 + HGI48_RS02590 0.64 +0.5 560,928 + HGI48_RS02590 0.65 +1.3 560,929 - HGI48_RS02590 0.65 -2.5 560,929 - HGI48_RS02590 0.65 +0.3 560,929 - HGI48_RS02590 0.65 -0.9 561,147 + HGI48_RS02590 0.83 -1.9 561,148 - HGI48_RS02590 0.83 -0.5 561,148 - HGI48_RS02590 0.83 +0.3 561,148 - -0.1 561,220 + HGI48_RS02590 0.89 +0.2 561,283 + +0.9 561,338 + +1.5 561,396 + -1.9 561,397 - -0.4 561,397 - -2.7 561,399 - -1.1 561,418 + -2.2 561,418 + -0.3 561,418 + +0.5 561,418 + +1.1 561,419 - -1.3 561,419 - +0.3 561,419 - -0.8 561,419 - -0.1 561,422 + +0.5 561,422 + -0.2 561,422 + -0.1 561,423 - -0.5 561,438 - +0.9 561,438 - +0.3 561,438 - +0.6 561,456 - -0.2 561,460 - -1.3 561,474 - +0.4 561,474 - -1.1 561,478 - -0.9 561,703 + -1.5 561,738 + -1.2 561,740 + +1.2 561,805 + -1.9 561,988 - HGI48_RS02595 0.14 -1.5 561,988 - HGI48_RS02595 0.14 +0.2 561,988 - HGI48_RS02595 0.14 -0.8 561,989 + HGI48_RS02595 0.14 -1.4 561,990 - HGI48_RS02595 0.14 -0.3 561,990 - HGI48_RS02595 0.14 -0.4 561,990 - HGI48_RS02595 0.14 -1.5 562,101 - HGI48_RS02595 0.22 +0.2 562,101 - HGI48_RS02595 0.22 -0.1 562,136 + HGI48_RS02595 0.24 +1.1 562,137 - HGI48_RS02595 0.24 -1.5 562,160 + HGI48_RS02595 0.26 +0.2 562,163 - HGI48_RS02595 0.26 -1.9 562,163 - HGI48_RS02595 0.26 -3.0 562,213 + HGI48_RS02595 0.30 -1.5 562,251 + HGI48_RS02595 0.32 +0.5 562,295 + HGI48_RS02595 0.35 +1.0 562,363 + HGI48_RS02595 0.40 +0.7 562,433 + HGI48_RS02595 0.45 +0.1 562,433 + HGI48_RS02595 0.45 -1.5 562,433 + HGI48_RS02595 0.45 -0.8 562,433 + HGI48_RS02595 0.45 +0.4 562,434 - HGI48_RS02595 0.45 -1.6 562,434 - HGI48_RS02595 0.45 -0.2 562,458 + HGI48_RS02595 0.47 +0.5 562,459 - HGI48_RS02595 0.47 -0.6 562,498 + HGI48_RS02595 0.50 -1.1 562,498 + HGI48_RS02595 0.50 -0.4 562,499 - HGI48_RS02595 0.50 -0.5 562,507 + -0.5 562,508 - HGI48_RS02595 0.51 +0.5 562,512 - HGI48_RS02595 0.51 -1.1 562,512 - +0.5 562,512 - -0.5 562,537 + -0.1 562,548 + HGI48_RS02595 0.53 -1.7 562,564 + HGI48_RS02595 0.55 -0.3 562,571 - HGI48_RS02595 0.55 -2.1 562,573 + HGI48_RS02595 0.55 +0.8 562,573 + +0.5 562,705 + +0.5 562,705 + HGI48_RS02595 0.65 -1.3 562,705 + HGI48_RS02595 0.65 -1.5 562,709 - HGI48_RS02595 0.65 +0.1 562,917 + HGI48_RS02595 0.80 +0.7 562,918 - HGI48_RS02595 0.80 -1.3 562,918 - HGI48_RS02595 0.80 -1.5 562,918 - -0.5 562,918 - HGI48_RS02595 0.80 -1.7 562,918 - HGI48_RS02595 0.80 -1.2 562,992 + HGI48_RS02595 0.85 -1.9 563,000 + HGI48_RS02595 0.86 -2.2 563,015 - HGI48_RS02595 0.87 -3.1 563,051 - HGI48_RS02595 0.89 -1.2 563,106 - -0.2 563,112 + -0.9 563,112 + -1.1 563,112 + -1.3 563,113 - +0.2 563,113 - -2.1 563,113 - +0.5 563,113 - -0.0 563,113 - -1.6 563,113 - -0.5 563,113 - -2.3 563,113 - -1.9 563,113 - -0.5 563,113 - +1.0 563,113 - +1.0 563,117 + -0.9 563,117 + -1.0 563,117 + +1.0 563,117 + +0.5 563,117 + +0.5 563,118 - -0.8 563,118 - +1.1 563,118 - +1.0 563,118 - -1.3 563,118 - -0.9 563,118 - +0.9 563,156 - +1.0 563,161 + -0.5 563,183 - -1.0 563,207 - -2.0 563,215 + +0.9 563,230 + -0.1 563,230 + +2.2 563,340 + -0.5 563,340 + HGI48_RS02600 0.11 +1.6 563,341 - HGI48_RS02600 0.11 -1.5 563,430 + HGI48_RS02600 0.18 -0.3 563,442 + HGI48_RS02600 0.19 +0.5 563,442 + HGI48_RS02600 0.19 -0.5 563,443 - HGI48_RS02600 0.19 -0.3 563,443 - HGI48_RS02600 0.19 -1.3 563,464 - HGI48_RS02600 0.21 -0.2 563,483 + HGI48_RS02600 0.23 -1.5 563,487 + HGI48_RS02600 0.23 +1.2 563,488 - HGI48_RS02600 0.23 -0.2 563,488 - HGI48_RS02600 0.23 +0.5 563,510 + HGI48_RS02600 0.25 -0.4 563,654 + HGI48_RS02600 0.36 -1.9 563,666 + HGI48_RS02600 0.37 +1.1 563,677 + HGI48_RS02600 0.38 -1.5 563,677 + HGI48_RS02600 0.38 +0.2 563,688 + HGI48_RS02600 0.38 +0.2 563,689 - HGI48_RS02600 0.39 -0.0 563,689 - HGI48_RS02600 0.39 -0.8 563,689 - HGI48_RS02600 0.39 +1.8 563,747 + HGI48_RS02600 0.43 -3.1 563,750 - HGI48_RS02600 0.43 +0.5 563,768 + +2.5 563,768 + +1.5 563,790 + HGI48_RS02600 0.46 +1.2 563,796 + HGI48_RS02600 0.47 -0.9 563,797 - HGI48_RS02600 0.47 -1.1 563,799 - HGI48_RS02600 0.47 -1.9 563,799 - +2.6 563,842 + HGI48_RS02600 0.50 +0.5 563,885 + HGI48_RS02600 0.54 -2.3 563,905 - HGI48_RS02600 0.55 +0.0 563,937 + HGI48_RS02600 0.58 -2.9 563,937 + HGI48_RS02600 0.58 -0.5 563,937 + HGI48_RS02600 0.58 -0.3 563,938 - HGI48_RS02600 0.58 +1.1 563,940 + -0.5 563,941 - -1.1 563,949 + HGI48_RS02600 0.59 -0.9 564,007 + HGI48_RS02600 0.63 +0.7 564,009 + HGI48_RS02600 0.63 -0.0 564,009 + +0.5 564,010 - HGI48_RS02600 0.63 -0.8 564,010 - HGI48_RS02600 0.63 +0.1 564,010 - HGI48_RS02600 0.63 -0.8 564,010 - +1.5 564,109 + HGI48_RS02600 0.71 -0.3 564,109 + HGI48_RS02600 0.71 -1.3 564,110 - HGI48_RS02600 0.71 -3.0 564,110 - HGI48_RS02600 0.71 -3.0 564,110 - HGI48_RS02600 0.71 +0.2 564,113 + HGI48_RS02600 0.71 -0.3 564,113 + HGI48_RS02600 0.71 -1.4 564,113 + HGI48_RS02600 0.71 +0.3 564,114 - HGI48_RS02600 0.72 -1.5 564,114 - HGI48_RS02600 0.72 -1.5 564,114 - HGI48_RS02600 0.72 +0.1 564,114 - HGI48_RS02600 0.72 +0.1 564,114 - HGI48_RS02600 0.72 -1.1 564,168 - HGI48_RS02600 0.76 -0.2 564,172 - HGI48_RS02600 0.76 +0.6
Or see this region's nucleotide sequence