Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02575 and HGI48_RS02580 are separated by 0 nucleotides HGI48_RS02580 and HGI48_RS02585 are separated by 27 nucleotides
HGI48_RS02575: HGI48_RS02575 - heavy metal translocating P-type ATPase, at 555,985 to 558,390
_RS02575
HGI48_RS02580: HGI48_RS02580 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 558,391 to 558,822
_RS02580
HGI48_RS02585: HGI48_RS02585 - LacI family DNA-binding transcriptional regulator, at 558,850 to 559,872
_RS02585
Position (kb) 558
559 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 557.421 kb on + strand, within HGI48_RS02575 at 557.507 kb on - strand, within HGI48_RS02575 at 557.507 kb on - strand, within HGI48_RS02575 at 557.724 kb on - strand, within HGI48_RS02575 at 557.724 kb on - strand, within HGI48_RS02575 at 557.724 kb on - strand, within HGI48_RS02575 at 557.957 kb on + strand, within HGI48_RS02575 at 558.349 kb on + strand at 558.349 kb on + strand at 558.349 kb on + strand at 558.350 kb on - strand at 558.363 kb on + strand at 558.370 kb on + strand at 558.372 kb on + strand at 558.373 kb on - strand at 558.464 kb on + strand, within HGI48_RS02580 at 558.464 kb on + strand, within HGI48_RS02580 at 558.465 kb on - strand at 558.465 kb on - strand, within HGI48_RS02580 at 558.484 kb on - strand at 558.496 kb on + strand, within HGI48_RS02580 at 558.505 kb on + strand, within HGI48_RS02580 at 558.505 kb on + strand, within HGI48_RS02580 at 558.506 kb on - strand, within HGI48_RS02580 at 558.538 kb on - strand at 558.683 kb on + strand at 558.683 kb on + strand, within HGI48_RS02580 at 558.683 kb on + strand at 558.684 kb on - strand, within HGI48_RS02580 at 558.684 kb on - strand, within HGI48_RS02580 at 558.684 kb on - strand, within HGI48_RS02580 at 558.807 kb on + strand at 558.981 kb on + strand, within HGI48_RS02585 at 558.981 kb on + strand, within HGI48_RS02585 at 558.982 kb on - strand, within HGI48_RS02585 at 558.982 kb on - strand at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand, within HGI48_RS02585 at 559.322 kb on + strand at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.323 kb on - strand, within HGI48_RS02585 at 559.372 kb on - strand, within HGI48_RS02585 at 559.535 kb on + strand, within HGI48_RS02585 at 559.653 kb on + strand at 559.653 kb on + strand, within HGI48_RS02585 at 559.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 557,421 + HGI48_RS02575 0.60 -0.7 557,507 - HGI48_RS02575 0.63 -0.9 557,507 - HGI48_RS02575 0.63 -0.1 557,724 - HGI48_RS02575 0.72 +0.5 557,724 - HGI48_RS02575 0.72 -2.1 557,724 - HGI48_RS02575 0.72 -0.9 557,957 + HGI48_RS02575 0.82 +0.1 558,349 + -1.1 558,349 + -0.9 558,349 + -0.2 558,350 - +3.1 558,363 + -0.5 558,370 + -1.3 558,372 + +0.6 558,373 - -0.5 558,464 + HGI48_RS02580 0.17 -0.4 558,464 + HGI48_RS02580 0.17 -0.0 558,465 - +0.5 558,465 - HGI48_RS02580 0.17 +0.9 558,484 - +1.2 558,496 + HGI48_RS02580 0.24 -0.3 558,505 + HGI48_RS02580 0.26 -0.9 558,505 + HGI48_RS02580 0.26 -0.5 558,506 - HGI48_RS02580 0.27 -1.5 558,538 - +1.9 558,683 + +1.8 558,683 + HGI48_RS02580 0.68 -2.1 558,683 + -0.5 558,684 - HGI48_RS02580 0.68 -0.3 558,684 - HGI48_RS02580 0.68 -3.3 558,684 - HGI48_RS02580 0.68 -1.9 558,807 + -0.9 558,981 + HGI48_RS02585 0.13 +0.2 558,981 + HGI48_RS02585 0.13 -1.3 558,982 - HGI48_RS02585 0.13 +0.6 558,982 - +1.5 559,322 + HGI48_RS02585 0.46 -0.5 559,322 + HGI48_RS02585 0.46 -0.2 559,322 + HGI48_RS02585 0.46 +0.2 559,322 + -1.1 559,322 + HGI48_RS02585 0.46 +0.7 559,322 + HGI48_RS02585 0.46 -1.9 559,322 + +1.7 559,322 + HGI48_RS02585 0.46 -0.0 559,322 + HGI48_RS02585 0.46 +0.8 559,322 + HGI48_RS02585 0.46 +0.1 559,322 + +1.2 559,323 - HGI48_RS02585 0.46 +0.5 559,323 - HGI48_RS02585 0.46 +0.5 559,323 - HGI48_RS02585 0.46 -0.6 559,323 - HGI48_RS02585 0.46 +0.1 559,323 - HGI48_RS02585 0.46 -2.1 559,323 - HGI48_RS02585 0.46 -0.5 559,323 - HGI48_RS02585 0.46 +0.4 559,323 - HGI48_RS02585 0.46 -0.4 559,372 - HGI48_RS02585 0.51 -0.9 559,535 + HGI48_RS02585 0.67 -0.7 559,653 + +1.8 559,653 + HGI48_RS02585 0.78 -1.5 559,654 - +1.8
Or see this region's nucleotide sequence