Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02155 and HGI48_RS02160 are separated by 83 nucleotides HGI48_RS02160 and HGI48_RS02165 are separated by 65 nucleotides HGI48_RS02165 and HGI48_RS02170 are separated by 34 nucleotides HGI48_RS02170 and HGI48_RS02175 are separated by 69 nucleotides
HGI48_RS02155: HGI48_RS02155 - SDR family oxidoreductase, at 471,517 to 472,314
_RS02155
HGI48_RS02160: HGI48_RS02160 - cytolytic delta-endotoxin, at 472,398 to 473,060
_RS02160
HGI48_RS02165: HGI48_RS02165 - type-1Ba cytolytic delta-endotoxin, at 473,126 to 473,737
_RS02165
HGI48_RS02170: HGI48_RS02170 - type-2Aa cytolytic delta-endotoxin, at 473,772 to 474,371
_RS02170
HGI48_RS02175: HGI48_RS02175 - delta-endotoxin CytB, at 474,441 to 475,076
_RS02175
Position (kb) 473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 472.264 kb on + strand at 472.264 kb on + strand at 472.264 kb on + strand at 472.264 kb on + strand at 472.265 kb on - strand at 472.265 kb on - strand at 472.265 kb on - strand at 472.265 kb on - strand at 472.266 kb on + strand at 472.266 kb on + strand at 472.266 kb on + strand at 472.266 kb on + strand at 472.267 kb on - strand at 472.407 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.447 kb on + strand at 472.448 kb on - strand at 472.448 kb on - strand at 472.473 kb on - strand, within HGI48_RS02160 at 472.473 kb on - strand, within HGI48_RS02160 at 472.560 kb on + strand, within HGI48_RS02160 at 472.560 kb on + strand, within HGI48_RS02160 at 472.563 kb on + strand, within HGI48_RS02160 at 472.563 kb on + strand, within HGI48_RS02160 at 472.564 kb on - strand, within HGI48_RS02160 at 472.564 kb on - strand at 472.570 kb on + strand, within HGI48_RS02160 at 472.571 kb on - strand, within HGI48_RS02160 at 472.571 kb on - strand, within HGI48_RS02160 at 472.574 kb on + strand, within HGI48_RS02160 at 472.574 kb on + strand, within HGI48_RS02160 at 472.574 kb on + strand, within HGI48_RS02160 at 472.574 kb on + strand, within HGI48_RS02160 at 472.575 kb on - strand, within HGI48_RS02160 at 472.575 kb on - strand, within HGI48_RS02160 at 472.575 kb on - strand, within HGI48_RS02160 at 472.575 kb on - strand at 472.576 kb on + strand, within HGI48_RS02160 at 472.576 kb on + strand, within HGI48_RS02160 at 472.577 kb on - strand, within HGI48_RS02160 at 472.577 kb on - strand, within HGI48_RS02160 at 472.577 kb on - strand, within HGI48_RS02160 at 472.577 kb on - strand at 472.589 kb on + strand, within HGI48_RS02160 at 472.590 kb on - strand, within HGI48_RS02160 at 472.590 kb on - strand, within HGI48_RS02160 at 472.721 kb on + strand, within HGI48_RS02160 at 472.721 kb on + strand, within HGI48_RS02160 at 472.722 kb on - strand, within HGI48_RS02160 at 472.722 kb on - strand at 472.798 kb on - strand, within HGI48_RS02160 at 472.857 kb on + strand, within HGI48_RS02160 at 472.902 kb on - strand at 472.903 kb on + strand, within HGI48_RS02160 at 472.903 kb on + strand, within HGI48_RS02160 at 472.962 kb on + strand, within HGI48_RS02160 at 472.963 kb on - strand at 472.967 kb on + strand, within HGI48_RS02160 at 472.967 kb on + strand, within HGI48_RS02160 at 472.967 kb on + strand at 472.968 kb on - strand, within HGI48_RS02160 at 473.022 kb on - strand at 473.022 kb on - strand at 473.024 kb on - strand at 473.028 kb on - strand at 473.048 kb on + strand at 473.051 kb on + strand at 473.052 kb on - strand at 473.052 kb on - strand at 473.052 kb on - strand at 473.060 kb on + strand at 473.061 kb on - strand at 473.061 kb on - strand at 473.061 kb on - strand at 473.061 kb on - strand at 473.216 kb on + strand, within HGI48_RS02165 at 473.216 kb on + strand, within HGI48_RS02165 at 473.217 kb on - strand, within HGI48_RS02165 at 473.217 kb on - strand, within HGI48_RS02165 at 473.309 kb on + strand, within HGI48_RS02165 at 473.310 kb on - strand, within HGI48_RS02165 at 473.310 kb on - strand, within HGI48_RS02165 at 473.310 kb on - strand, within HGI48_RS02165 at 473.317 kb on - strand, within HGI48_RS02165 at 473.356 kb on + strand, within HGI48_RS02165 at 473.356 kb on + strand, within HGI48_RS02165 at 473.357 kb on - strand, within HGI48_RS02165 at 473.362 kb on + strand, within HGI48_RS02165 at 473.428 kb on + strand, within HGI48_RS02165 at 473.430 kb on + strand, within HGI48_RS02165 at 473.430 kb on + strand, within HGI48_RS02165 at 473.430 kb on + strand, within HGI48_RS02165 at 473.430 kb on + strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.431 kb on - strand, within HGI48_RS02165 at 473.443 kb on + strand, within HGI48_RS02165 at 473.447 kb on - strand, within HGI48_RS02165 at 473.530 kb on + strand, within HGI48_RS02165 at 473.530 kb on + strand, within HGI48_RS02165 at 473.531 kb on - strand, within HGI48_RS02165 at 473.531 kb on - strand, within HGI48_RS02165 at 473.531 kb on - strand at 473.609 kb on - strand, within HGI48_RS02165 at 473.625 kb on - strand, within HGI48_RS02165 at 473.625 kb on - strand, within HGI48_RS02165 at 473.625 kb on - strand, within HGI48_RS02165 at 473.662 kb on - strand, within HGI48_RS02165 at 473.719 kb on + strand at 473.721 kb on + strand at 473.729 kb on + strand at 473.737 kb on + strand at 473.738 kb on - strand at 473.750 kb on + strand at 473.751 kb on - strand at 473.804 kb on + strand at 473.804 kb on + strand at 473.805 kb on - strand at 473.876 kb on + strand, within HGI48_RS02170 at 473.876 kb on + strand, within HGI48_RS02170 at 473.907 kb on + strand, within HGI48_RS02170 at 473.930 kb on + strand, within HGI48_RS02170 at 473.931 kb on - strand, within HGI48_RS02170 at 473.940 kb on - strand, within HGI48_RS02170 at 473.951 kb on + strand, within HGI48_RS02170 at 473.952 kb on - strand at 473.952 kb on - strand at 473.954 kb on + strand, within HGI48_RS02170 at 473.955 kb on - strand, within HGI48_RS02170 at 473.955 kb on - strand, within HGI48_RS02170 at 473.956 kb on + strand, within HGI48_RS02170 at 473.957 kb on - strand, within HGI48_RS02170 at 473.957 kb on - strand at 473.996 kb on + strand, within HGI48_RS02170 at 474.002 kb on - strand, within HGI48_RS02170 at 474.002 kb on - strand, within HGI48_RS02170 at 474.087 kb on + strand, within HGI48_RS02170 at 474.087 kb on + strand, within HGI48_RS02170 at 474.087 kb on + strand, within HGI48_RS02170 at 474.087 kb on + strand, within HGI48_RS02170 at 474.088 kb on - strand, within HGI48_RS02170 at 474.143 kb on + strand, within HGI48_RS02170 at 474.143 kb on + strand, within HGI48_RS02170 at 474.156 kb on + strand at 474.156 kb on + strand, within HGI48_RS02170 at 474.162 kb on - strand, within HGI48_RS02170 at 474.243 kb on - strand, within HGI48_RS02170 at 474.270 kb on - strand, within HGI48_RS02170 at 474.344 kb on + strand at 474.344 kb on + strand at 474.362 kb on + strand at 474.363 kb on - strand at 474.390 kb on - strand at 474.406 kb on - strand at 474.408 kb on + strand at 474.408 kb on + strand at 474.442 kb on + strand at 474.490 kb on + strand at 474.495 kb on - strand at 474.495 kb on - strand at 474.495 kb on - strand at 474.495 kb on - strand at 474.622 kb on + strand, within HGI48_RS02175 at 474.623 kb on - strand, within HGI48_RS02175 at 474.623 kb on - strand, within HGI48_RS02175 at 474.623 kb on - strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.626 kb on + strand, within HGI48_RS02175 at 474.628 kb on + strand, within HGI48_RS02175 at 474.629 kb on - strand, within HGI48_RS02175 at 474.629 kb on - strand, within HGI48_RS02175 at 474.629 kb on - strand, within HGI48_RS02175 at 474.629 kb on - strand, within HGI48_RS02175 at 474.629 kb on - strand, within HGI48_RS02175 at 474.672 kb on - strand, within HGI48_RS02175 at 474.699 kb on - strand, within HGI48_RS02175 at 474.714 kb on - strand, within HGI48_RS02175 at 474.714 kb on - strand, within HGI48_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 472,264 + -0.6 472,264 + -1.1 472,264 + +0.5 472,264 + -0.5 472,265 - -1.3 472,265 - -3.3 472,265 - -0.3 472,265 - +0.1 472,266 + +0.2 472,266 + +0.1 472,266 + -0.0 472,266 + +0.8 472,267 - -0.2 472,407 + -1.5 472,447 + +0.5 472,447 + -2.8 472,447 + +1.9 472,447 + +0.2 472,447 + -0.3 472,447 + -0.1 472,447 + +0.5 472,448 - +0.1 472,448 - -0.3 472,473 - HGI48_RS02160 0.11 -0.2 472,473 - HGI48_RS02160 0.11 -0.8 472,560 + HGI48_RS02160 0.24 -1.2 472,560 + HGI48_RS02160 0.24 -1.5 472,563 + HGI48_RS02160 0.25 -3.1 472,563 + HGI48_RS02160 0.25 +0.4 472,564 - HGI48_RS02160 0.25 -1.7 472,564 - -0.5 472,570 + HGI48_RS02160 0.26 -0.9 472,571 - HGI48_RS02160 0.26 -1.5 472,571 - HGI48_RS02160 0.26 -0.1 472,574 + HGI48_RS02160 0.27 -0.5 472,574 + HGI48_RS02160 0.27 +0.4 472,574 + HGI48_RS02160 0.27 -2.3 472,574 + HGI48_RS02160 0.27 -0.8 472,575 - HGI48_RS02160 0.27 -0.1 472,575 - HGI48_RS02160 0.27 +0.5 472,575 - HGI48_RS02160 0.27 +0.9 472,575 - +3.1 472,576 + HGI48_RS02160 0.27 -0.5 472,576 + HGI48_RS02160 0.27 +0.5 472,577 - HGI48_RS02160 0.27 -0.7 472,577 - HGI48_RS02160 0.27 +0.4 472,577 - HGI48_RS02160 0.27 -2.7 472,577 - -1.1 472,589 + HGI48_RS02160 0.29 +0.3 472,590 - HGI48_RS02160 0.29 +0.0 472,590 - HGI48_RS02160 0.29 +0.5 472,721 + HGI48_RS02160 0.49 +0.0 472,721 + HGI48_RS02160 0.49 +0.2 472,722 - HGI48_RS02160 0.49 -0.1 472,722 - +0.5 472,798 - HGI48_RS02160 0.60 -0.3 472,857 + HGI48_RS02160 0.69 +0.5 472,902 - +0.9 472,903 + HGI48_RS02160 0.76 +0.9 472,903 + HGI48_RS02160 0.76 -0.5 472,962 + HGI48_RS02160 0.85 -2.5 472,963 - +0.5 472,967 + HGI48_RS02160 0.86 +0.5 472,967 + HGI48_RS02160 0.86 -1.8 472,967 + -1.1 472,968 - HGI48_RS02160 0.86 +0.8 473,022 - +1.5 473,022 - -1.1 473,024 - +1.1 473,028 - +0.1 473,048 + +0.5 473,051 + -0.5 473,052 - +0.5 473,052 - +0.9 473,052 - +0.7 473,060 + -1.5 473,061 - -0.5 473,061 - -2.3 473,061 - -1.8 473,061 - -0.2 473,216 + HGI48_RS02165 0.15 -1.6 473,216 + HGI48_RS02165 0.15 -1.8 473,217 - HGI48_RS02165 0.15 -1.4 473,217 - HGI48_RS02165 0.15 -3.7 473,309 + HGI48_RS02165 0.30 -1.2 473,310 - HGI48_RS02165 0.30 +0.1 473,310 - HGI48_RS02165 0.30 +1.6 473,310 - HGI48_RS02165 0.30 -1.4 473,317 - HGI48_RS02165 0.31 +0.7 473,356 + HGI48_RS02165 0.38 -1.8 473,356 + HGI48_RS02165 0.38 +0.2 473,357 - HGI48_RS02165 0.38 -2.9 473,362 + HGI48_RS02165 0.39 +0.3 473,428 + HGI48_RS02165 0.49 +0.2 473,430 + HGI48_RS02165 0.50 -0.1 473,430 + HGI48_RS02165 0.50 -1.3 473,430 + HGI48_RS02165 0.50 -3.1 473,430 + HGI48_RS02165 0.50 +0.7 473,431 - HGI48_RS02165 0.50 +2.0 473,431 - HGI48_RS02165 0.50 -2.3 473,431 - +2.3 473,431 - HGI48_RS02165 0.50 -1.8 473,431 - HGI48_RS02165 0.50 -0.5 473,431 - HGI48_RS02165 0.50 +0.0 473,431 - HGI48_RS02165 0.50 -1.1 473,431 - HGI48_RS02165 0.50 -1.7 473,431 - HGI48_RS02165 0.50 -1.7 473,443 + HGI48_RS02165 0.52 -1.8 473,447 - HGI48_RS02165 0.52 -1.5 473,530 + HGI48_RS02165 0.66 -1.5 473,530 + HGI48_RS02165 0.66 -2.0 473,531 - HGI48_RS02165 0.66 -0.3 473,531 - HGI48_RS02165 0.66 -2.5 473,531 - +1.5 473,609 - HGI48_RS02165 0.79 -2.1 473,625 - HGI48_RS02165 0.82 -0.9 473,625 - HGI48_RS02165 0.82 +0.4 473,625 - HGI48_RS02165 0.82 +1.0 473,662 - HGI48_RS02165 0.88 -2.8 473,719 + -1.1 473,721 + -2.3 473,729 + -1.1 473,737 + -1.8 473,738 - -2.1 473,750 + -0.2 473,751 - +2.5 473,804 + +0.9 473,804 + +0.5 473,805 - -0.1 473,876 + HGI48_RS02170 0.17 -1.1 473,876 + HGI48_RS02170 0.17 -0.1 473,907 + HGI48_RS02170 0.23 -1.9 473,930 + HGI48_RS02170 0.26 +0.1 473,931 - HGI48_RS02170 0.27 -0.2 473,940 - HGI48_RS02170 0.28 -0.1 473,951 + HGI48_RS02170 0.30 -2.7 473,952 - +0.5 473,952 - -1.1 473,954 + HGI48_RS02170 0.30 +0.1 473,955 - HGI48_RS02170 0.30 +0.7 473,955 - HGI48_RS02170 0.30 +0.9 473,956 + HGI48_RS02170 0.31 -1.1 473,957 - HGI48_RS02170 0.31 +0.1 473,957 - +2.1 473,996 + HGI48_RS02170 0.37 -0.7 474,002 - HGI48_RS02170 0.38 +0.3 474,002 - HGI48_RS02170 0.38 +0.2 474,087 + HGI48_RS02170 0.53 +1.8 474,087 + HGI48_RS02170 0.53 +0.1 474,087 + HGI48_RS02170 0.53 -1.5 474,087 + HGI48_RS02170 0.53 +0.1 474,088 - HGI48_RS02170 0.53 -1.8 474,143 + HGI48_RS02170 0.62 +0.4 474,143 + HGI48_RS02170 0.62 -1.1 474,156 + +0.5 474,156 + HGI48_RS02170 0.64 -0.4 474,162 - HGI48_RS02170 0.65 +0.2 474,243 - HGI48_RS02170 0.79 +0.1 474,270 - HGI48_RS02170 0.83 +0.7 474,344 + -1.6 474,344 + -0.5 474,362 + +0.9 474,363 - +0.2 474,390 - -0.2 474,406 - -1.8 474,408 + -0.0 474,408 + +0.2 474,442 + -2.1 474,490 + +0.5 474,495 - -0.7 474,495 - -0.9 474,495 - -2.1 474,495 - +0.5 474,622 + HGI48_RS02175 0.28 +0.5 474,623 - HGI48_RS02175 0.29 -2.4 474,623 - HGI48_RS02175 0.29 -1.5 474,623 - HGI48_RS02175 0.29 +0.2 474,626 + HGI48_RS02175 0.29 -1.5 474,626 + HGI48_RS02175 0.29 -2.5 474,626 + HGI48_RS02175 0.29 -1.1 474,626 + HGI48_RS02175 0.29 +0.5 474,626 + HGI48_RS02175 0.29 +0.3 474,626 + HGI48_RS02175 0.29 -2.0 474,628 + HGI48_RS02175 0.29 -1.5 474,629 - HGI48_RS02175 0.30 +0.3 474,629 - HGI48_RS02175 0.30 -0.1 474,629 - HGI48_RS02175 0.30 -0.1 474,629 - HGI48_RS02175 0.30 +1.8 474,629 - HGI48_RS02175 0.30 -2.3 474,672 - HGI48_RS02175 0.36 +0.2 474,699 - HGI48_RS02175 0.41 -0.2 474,714 - HGI48_RS02175 0.43 -1.1 474,714 - HGI48_RS02175 0.43 -2.9
Or see this region's nucleotide sequence