Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01840 and HGI48_RS01845 are separated by 27 nucleotides HGI48_RS01845 and HGI48_RS01850 overlap by 8 nucleotides HGI48_RS01850 and HGI48_RS01855 are separated by 92 nucleotides HGI48_RS01855 and HGI48_RS01860 are separated by 25 nucleotides
HGI48_RS01840: HGI48_RS01840 - ABC transporter permease, at 409,238 to 410,260
_RS01840
HGI48_RS01845: HGI48_RS01845 - ABC transporter permease, at 410,288 to 411,109
_RS01845
HGI48_RS01850: HGI48_RS01850 - ABC transporter ATP-binding protein, at 411,102 to 412,697
_RS01850
HGI48_RS01855: HGI48_RS01855 - proteasome-type protease, at 412,790 to 413,539
_RS01855
HGI48_RS01860: HGI48_RS01860 - transglutaminase family protein, at 413,565 to 414,392
_RS01860
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.114 kb on + strand, within HGI48_RS01840 at 410.115 kb on - strand, within HGI48_RS01840 at 410.115 kb on - strand at 410.143 kb on + strand at 410.144 kb on - strand, within HGI48_RS01840 at 410.144 kb on - strand, within HGI48_RS01840 at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.197 kb on + strand at 410.198 kb on - strand at 410.279 kb on + strand at 410.279 kb on + strand at 410.280 kb on - strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.285 kb on + strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.286 kb on - strand at 410.341 kb on + strand at 410.675 kb on - strand, within HGI48_RS01845 at 410.675 kb on - strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.724 kb on + strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand, within HGI48_RS01845 at 410.725 kb on - strand at 410.725 kb on - strand, within HGI48_RS01845 at 411.067 kb on - strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.112 kb on + strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.113 kb on - strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.196 kb on + strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.197 kb on - strand at 411.273 kb on - strand, within HGI48_RS01850 at 411.293 kb on + strand, within HGI48_RS01850 at 411.293 kb on + strand at 411.293 kb on + strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.294 kb on - strand, within HGI48_RS01850 at 411.305 kb on + strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.353 kb on - strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.381 kb on + strand, within HGI48_RS01850 at 411.382 kb on - strand, within HGI48_RS01850 at 411.702 kb on - strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.729 kb on + strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.730 kb on - strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.776 kb on + strand, within HGI48_RS01850 at 411.849 kb on + strand, within HGI48_RS01850 at 411.850 kb on - strand, within HGI48_RS01850 at 411.866 kb on - strand, within HGI48_RS01850 at 412.360 kb on + strand, within HGI48_RS01850 at 412.494 kb on + strand, within HGI48_RS01850 at 412.494 kb on + strand at 412.494 kb on + strand, within HGI48_RS01850 at 412.495 kb on - strand, within HGI48_RS01850 at 412.495 kb on - strand, within HGI48_RS01850 at 412.516 kb on + strand, within HGI48_RS01850 at 412.517 kb on - strand, within HGI48_RS01850 at 412.620 kb on + strand at 412.621 kb on - strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.766 kb on - strand at 412.766 kb on - strand at 412.791 kb on + strand at 412.843 kb on + strand at 412.843 kb on + strand at 412.843 kb on + strand at 412.844 kb on - strand at 412.844 kb on - strand at 412.887 kb on + strand at 412.887 kb on + strand, within HGI48_RS01855 at 412.887 kb on + strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 413.103 kb on + strand, within HGI48_RS01855 at 413.129 kb on - strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.296 kb on - strand, within HGI48_RS01855 at 413.326 kb on + strand at 413.326 kb on + strand, within HGI48_RS01855 at 413.326 kb on + strand at 413.326 kb on + strand, within HGI48_RS01855 at 413.327 kb on - strand at 413.532 kb on + strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.555 kb on + strand at 413.556 kb on - strand at 413.559 kb on + strand at 413.677 kb on + strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 410,114 + HGI48_RS01840 0.86 -0.1 410,114 + HGI48_RS01840 0.86 -0.5 410,114 + HGI48_RS01840 0.86 -0.4 410,114 + HGI48_RS01840 0.86 +0.4 410,114 + HGI48_RS01840 0.86 +0.5 410,114 + HGI48_RS01840 0.86 +0.6 410,114 + HGI48_RS01840 0.86 +0.5 410,114 + HGI48_RS01840 0.86 +1.3 410,114 + HGI48_RS01840 0.86 -2.5 410,115 - HGI48_RS01840 0.86 -1.8 410,115 - -0.5 410,143 + +1.1 410,144 - HGI48_RS01840 0.89 +0.2 410,144 - HGI48_RS01840 0.89 -2.1 410,186 + +1.8 410,186 + -0.8 410,186 + +0.5 410,186 + +1.2 410,187 - +1.8 410,187 - +1.5 410,187 - -1.8 410,187 - +1.3 410,197 + +0.5 410,198 - +0.5 410,279 + +0.7 410,279 + -0.1 410,280 - -0.3 410,285 + -0.5 410,285 + -1.8 410,285 + +0.5 410,285 + +0.3 410,285 + -0.3 410,285 + -2.7 410,285 + +0.9 410,285 + +0.4 410,286 - -1.7 410,286 - +0.6 410,286 - -0.6 410,286 - +0.1 410,286 - +2.1 410,286 - +0.1 410,286 - -0.1 410,286 - +0.6 410,286 - -0.1 410,286 - +1.8 410,286 - -1.7 410,286 - -0.5 410,286 - -1.1 410,341 + +1.2 410,675 - HGI48_RS01845 0.47 -0.3 410,675 - HGI48_RS01845 0.47 -1.1 410,724 + HGI48_RS01845 0.53 -1.1 410,724 + HGI48_RS01845 0.53 +1.0 410,724 + HGI48_RS01845 0.53 -1.1 410,724 + HGI48_RS01845 0.53 -0.7 410,724 + HGI48_RS01845 0.53 -1.5 410,725 - HGI48_RS01845 0.53 -0.8 410,725 - HGI48_RS01845 0.53 +1.2 410,725 - +1.8 410,725 - HGI48_RS01845 0.53 +0.8 411,067 - +2.6 411,112 + +1.6 411,112 + -2.7 411,112 + -0.4 411,113 - -0.1 411,113 - +0.2 411,113 - -0.5 411,196 + -1.5 411,196 + +1.3 411,196 + +1.0 411,197 - +0.1 411,197 - -1.0 411,197 - -0.3 411,273 - HGI48_RS01850 0.11 -0.1 411,293 + HGI48_RS01850 0.12 +0.1 411,293 + -1.1 411,293 + HGI48_RS01850 0.12 -0.5 411,294 - HGI48_RS01850 0.12 -2.1 411,294 - HGI48_RS01850 0.12 -1.5 411,294 - HGI48_RS01850 0.12 +0.2 411,305 + HGI48_RS01850 0.13 +0.1 411,353 - HGI48_RS01850 0.16 +1.7 411,353 - HGI48_RS01850 0.16 -2.5 411,381 + HGI48_RS01850 0.17 +0.0 411,381 + HGI48_RS01850 0.17 -0.4 411,381 + HGI48_RS01850 0.17 +0.1 411,382 - HGI48_RS01850 0.18 +0.8 411,702 - HGI48_RS01850 0.38 +0.0 411,729 + HGI48_RS01850 0.39 +1.7 411,729 + HGI48_RS01850 0.39 -0.8 411,729 + HGI48_RS01850 0.39 -1.5 411,729 + HGI48_RS01850 0.39 -0.9 411,729 + HGI48_RS01850 0.39 -0.3 411,730 - HGI48_RS01850 0.39 -1.8 411,730 - HGI48_RS01850 0.39 +0.9 411,730 - HGI48_RS01850 0.39 -0.5 411,776 + HGI48_RS01850 0.42 -1.4 411,776 + HGI48_RS01850 0.42 +0.2 411,776 + HGI48_RS01850 0.42 +0.9 411,849 + HGI48_RS01850 0.47 -0.9 411,850 - HGI48_RS01850 0.47 +0.5 411,866 - HGI48_RS01850 0.48 -0.6 412,360 + HGI48_RS01850 0.79 +1.2 412,494 + HGI48_RS01850 0.87 +0.5 412,494 + +2.5 412,494 + HGI48_RS01850 0.87 -1.3 412,495 - HGI48_RS01850 0.87 +0.7 412,495 - HGI48_RS01850 0.87 +1.0 412,516 + HGI48_RS01850 0.89 -0.5 412,517 - HGI48_RS01850 0.89 -2.1 412,620 + -0.4 412,621 - +1.3 412,765 + -1.8 412,765 + -0.6 412,765 + +0.8 412,765 + -0.4 412,765 + +1.0 412,766 - -0.1 412,766 - -0.5 412,791 + +0.9 412,843 + -0.5 412,843 + +1.3 412,843 + -1.3 412,844 - -3.4 412,844 - +0.3 412,887 + +2.1 412,887 + HGI48_RS01855 0.13 -2.1 412,887 + HGI48_RS01855 0.13 +0.3 412,888 - HGI48_RS01855 0.13 -0.1 412,888 - HGI48_RS01855 0.13 -1.8 412,888 - HGI48_RS01855 0.13 +0.1 412,888 - HGI48_RS01855 0.13 -0.1 412,888 - HGI48_RS01855 0.13 -0.2 412,888 - HGI48_RS01855 0.13 +1.2 412,888 - HGI48_RS01855 0.13 -0.2 412,888 - HGI48_RS01855 0.13 -0.3 413,103 + HGI48_RS01855 0.42 +0.3 413,129 - HGI48_RS01855 0.45 -2.1 413,295 + HGI48_RS01855 0.67 +0.0 413,295 + HGI48_RS01855 0.67 -0.5 413,295 + HGI48_RS01855 0.67 -1.5 413,296 - HGI48_RS01855 0.67 +1.2 413,326 + +1.5 413,326 + HGI48_RS01855 0.71 -0.0 413,326 + +1.3 413,326 + HGI48_RS01855 0.71 -0.6 413,327 - -0.1 413,532 + +0.3 413,533 - +0.0 413,533 - -0.0 413,533 - +1.0 413,533 - +1.3 413,533 - +0.9 413,539 + +0.5 413,539 + -0.5 413,539 + -0.6 413,539 + +0.4 413,539 + -0.3 413,539 + -0.5 413,539 + +0.1 413,539 + +0.9 413,539 + -1.8 413,539 + -0.1 413,539 + +0.2 413,539 + -0.9 413,540 - +1.4 413,540 - -0.5 413,540 - -1.8 413,540 - +0.4 413,540 - +0.1 413,540 - -1.2 413,540 - -0.9 413,540 - -1.8 413,540 - +0.3 413,540 - -2.3 413,540 - +0.9 413,540 - -2.9 413,555 + +0.3 413,556 - +1.1 413,559 + +0.9 413,677 + HGI48_RS01860 0.14 -0.0 413,678 - HGI48_RS01860 0.14 -0.7 413,678 - HGI48_RS01860 0.14 -1.3 413,678 - HGI48_RS01860 0.14 -0.2 413,678 - HGI48_RS01860 0.14 +1.3
Or see this region's nucleotide sequence