Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01660 and HGI48_RS01665 are separated by 12 nucleotides HGI48_RS01665 and HGI48_RS01670 are separated by 64 nucleotides HGI48_RS01670 and HGI48_RS01675 are separated by 276 nucleotides
HGI48_RS01660: HGI48_RS01660 - DNA topoisomerase IV subunit B, at 365,042 to 366,937
_RS01660
HGI48_RS01665: HGI48_RS01665 - LysR family transcriptional regulator, at 366,950 to 367,846
_RS01665
HGI48_RS01670: HGI48_RS01670 - NAD(P)H-dependent oxidoreductase, at 367,911 to 368,492
_RS01670
HGI48_RS01675: HGI48_RS01675 - DNA topoisomerase IV subunit A, at 368,769 to 371,045
_RS01675
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 366.946 kb on + strand at 366.946 kb on + strand at 366.946 kb on + strand at 366.947 kb on - strand at 367.078 kb on + strand, within HGI48_RS01665 at 367.078 kb on + strand, within HGI48_RS01665 at 367.078 kb on + strand, within HGI48_RS01665 at 367.079 kb on - strand, within HGI48_RS01665 at 367.143 kb on + strand, within HGI48_RS01665 at 367.143 kb on + strand, within HGI48_RS01665 at 367.144 kb on - strand, within HGI48_RS01665 at 367.144 kb on - strand, within HGI48_RS01665 at 367.312 kb on + strand, within HGI48_RS01665 at 367.312 kb on + strand, within HGI48_RS01665 at 367.312 kb on + strand, within HGI48_RS01665 at 367.312 kb on + strand, within HGI48_RS01665 at 367.312 kb on + strand, within HGI48_RS01665 at 367.313 kb on - strand, within HGI48_RS01665 at 367.313 kb on - strand, within HGI48_RS01665 at 367.313 kb on - strand, within HGI48_RS01665 at 367.366 kb on + strand, within HGI48_RS01665 at 367.366 kb on + strand, within HGI48_RS01665 at 367.366 kb on + strand, within HGI48_RS01665 at 367.367 kb on - strand, within HGI48_RS01665 at 367.464 kb on - strand, within HGI48_RS01665 at 367.480 kb on + strand, within HGI48_RS01665 at 367.580 kb on + strand, within HGI48_RS01665 at 367.580 kb on + strand, within HGI48_RS01665 at 367.581 kb on - strand, within HGI48_RS01665 at 367.676 kb on - strand, within HGI48_RS01665 at 367.676 kb on - strand, within HGI48_RS01665 at 367.754 kb on - strand, within HGI48_RS01665 at 367.761 kb on + strand at 367.767 kb on - strand at 367.893 kb on - strand at 367.962 kb on + strand at 367.962 kb on + strand at 368.051 kb on - strand, within HGI48_RS01670 at 368.138 kb on - strand at 368.138 kb on - strand, within HGI48_RS01670 at 368.138 kb on - strand, within HGI48_RS01670 at 368.170 kb on + strand, within HGI48_RS01670 at 368.171 kb on - strand, within HGI48_RS01670 at 368.178 kb on - strand at 368.178 kb on - strand, within HGI48_RS01670 at 368.178 kb on - strand, within HGI48_RS01670 at 368.251 kb on + strand, within HGI48_RS01670 at 368.252 kb on - strand, within HGI48_RS01670 at 368.299 kb on + strand, within HGI48_RS01670 at 368.299 kb on + strand, within HGI48_RS01670 at 368.300 kb on - strand, within HGI48_RS01670 at 368.300 kb on - strand, within HGI48_RS01670 at 368.300 kb on - strand, within HGI48_RS01670 at 368.453 kb on + strand at 368.454 kb on - strand at 368.482 kb on - strand at 368.482 kb on - strand at 368.487 kb on - strand at 368.487 kb on - strand at 368.487 kb on - strand at 368.522 kb on + strand at 368.523 kb on - strand at 368.523 kb on - strand at 368.530 kb on - strand at 368.530 kb on - strand at 368.548 kb on + strand at 368.573 kb on + strand at 368.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 366,946 + -2.8 366,946 + -2.3 366,946 + -0.7 366,947 - -2.3 367,078 + HGI48_RS01665 0.14 +0.2 367,078 + HGI48_RS01665 0.14 +0.4 367,078 + HGI48_RS01665 0.14 +0.3 367,079 - HGI48_RS01665 0.14 -0.1 367,143 + HGI48_RS01665 0.22 -0.0 367,143 + HGI48_RS01665 0.22 -1.1 367,144 - HGI48_RS01665 0.22 -0.5 367,144 - HGI48_RS01665 0.22 -1.1 367,312 + HGI48_RS01665 0.40 -1.5 367,312 + HGI48_RS01665 0.40 -2.1 367,312 + HGI48_RS01665 0.40 -0.2 367,312 + HGI48_RS01665 0.40 +0.1 367,312 + HGI48_RS01665 0.40 -1.8 367,313 - HGI48_RS01665 0.40 -2.1 367,313 - HGI48_RS01665 0.40 +0.5 367,313 - HGI48_RS01665 0.40 -1.1 367,366 + HGI48_RS01665 0.46 +0.7 367,366 + HGI48_RS01665 0.46 +0.2 367,366 + HGI48_RS01665 0.46 -0.7 367,367 - HGI48_RS01665 0.46 -0.2 367,464 - HGI48_RS01665 0.57 +0.7 367,480 + HGI48_RS01665 0.59 -1.5 367,580 + HGI48_RS01665 0.70 -2.3 367,580 + HGI48_RS01665 0.70 +4.2 367,581 - HGI48_RS01665 0.70 -1.0 367,676 - HGI48_RS01665 0.81 +0.3 367,676 - HGI48_RS01665 0.81 -2.5 367,754 - HGI48_RS01665 0.90 +0.8 367,761 + +0.8 367,767 - +0.1 367,893 - +1.2 367,962 + -1.7 367,962 + -0.3 368,051 - HGI48_RS01670 0.24 -1.1 368,138 - +0.5 368,138 - HGI48_RS01670 0.39 -0.5 368,138 - HGI48_RS01670 0.39 -2.5 368,170 + HGI48_RS01670 0.45 -2.1 368,171 - HGI48_RS01670 0.45 +0.2 368,178 - +1.3 368,178 - HGI48_RS01670 0.46 -0.9 368,178 - HGI48_RS01670 0.46 -1.5 368,251 + HGI48_RS01670 0.58 -0.2 368,252 - HGI48_RS01670 0.59 +0.0 368,299 + HGI48_RS01670 0.67 -1.8 368,299 + HGI48_RS01670 0.67 -0.7 368,300 - HGI48_RS01670 0.67 +0.3 368,300 - HGI48_RS01670 0.67 -0.8 368,300 - HGI48_RS01670 0.67 -1.6 368,453 + -0.3 368,454 - -0.4 368,482 - -1.5 368,482 - -0.5 368,487 - +0.2 368,487 - +0.5 368,487 - -0.2 368,522 + -0.5 368,523 - -0.1 368,523 - -3.1 368,530 - +0.1 368,530 - -0.6 368,548 + +0.3 368,573 + -1.5 368,604 - -0.7
Or see this region's nucleotide sequence