Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01005

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01000 and HGI48_RS01005 are separated by 87 nucleotidesHGI48_RS01005 and HGI48_RS01010 are separated by 194 nucleotides HGI48_RS01000: HGI48_RS01000 - 16S ribosomal RNA, at 226,834 to 228,378 _RS01000 HGI48_RS01005: HGI48_RS01005 - tRNA-Glu, at 228,466 to 228,541 _RS01005 HGI48_RS01010: HGI48_RS01010 - 23S ribosomal RNA, at 228,736 to 231,661 _RS01010 Position (kb) 228 229Strain fitness (log2 ratio) -2 -1 0 1at 227.624 kb on + strand, within HGI48_RS01000at 229.384 kb on + strand, within HGI48_RS01010

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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227,624 + HGI48_RS01000 0.51 -2.7
229,384 + HGI48_RS01010 0.22 -0.6

Or see this region's nucleotide sequence