Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00770 and HGI48_RS00775 are separated by 231 nucleotides HGI48_RS00775 and HGI48_RS00780 are separated by 56 nucleotides
HGI48_RS00770: HGI48_RS00770 - ADP-glyceromanno-heptose 6-epimerase, at 176,324 to 177,256
_RS00770
HGI48_RS00775: HGI48_RS00775 - divergent polysaccharide deacetylase family protein, at 177,488 to 178,408
_RS00775
HGI48_RS00780: HGI48_RS00780 - murein hydrolase activator EnvC, at 178,465 to 179,739
_RS00780
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.314 kb on - strand at 177.314 kb on - strand at 177.314 kb on - strand at 177.316 kb on - strand at 177.318 kb on + strand at 177.319 kb on - strand at 177.319 kb on - strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.550 kb on + strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.551 kb on - strand at 177.669 kb on + strand, within HGI48_RS00775 at 177.687 kb on + strand, within HGI48_RS00775 at 177.904 kb on + strand, within HGI48_RS00775 at 177.979 kb on - strand, within HGI48_RS00775 at 177.979 kb on - strand, within HGI48_RS00775 at 178.423 kb on + strand at 178.423 kb on + strand at 178.424 kb on - strand at 178.432 kb on + strand at 178.451 kb on + strand at 178.452 kb on - strand at 178.452 kb on - strand at 178.474 kb on + strand at 178.474 kb on + strand at 178.523 kb on + strand at 178.524 kb on - strand at 178.622 kb on + strand, within HGI48_RS00780 at 178.628 kb on + strand at 178.677 kb on - strand, within HGI48_RS00780 at 178.832 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand, within HGI48_RS00780 at 178.899 kb on + strand at 178.900 kb on - strand, within HGI48_RS00780 at 178.901 kb on + strand, within HGI48_RS00780 at 178.902 kb on - strand, within HGI48_RS00780 at 178.902 kb on - strand, within HGI48_RS00780 at 178.902 kb on - strand at 179.264 kb on + strand, within HGI48_RS00780
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 177,314 - -1.1 177,314 - +0.8 177,314 - -0.3 177,316 - -0.9 177,318 + -0.8 177,319 - +1.3 177,319 - -1.8 177,550 + -1.8 177,550 + -2.3 177,550 + -2.3 177,550 + +0.5 177,550 + +0.1 177,550 + +0.5 177,551 - -1.1 177,551 - +0.7 177,551 - -0.7 177,551 - -1.1 177,551 - +0.1 177,669 + HGI48_RS00775 0.20 +0.5 177,687 + HGI48_RS00775 0.22 -2.2 177,904 + HGI48_RS00775 0.45 +0.2 177,979 - HGI48_RS00775 0.53 -2.3 177,979 - HGI48_RS00775 0.53 -1.2 178,423 + -1.5 178,423 + -1.5 178,424 - -0.2 178,432 + -1.6 178,451 + -1.7 178,452 - -1.2 178,452 - -0.5 178,474 + -0.5 178,474 + -1.8 178,523 + +0.3 178,524 - -0.0 178,622 + HGI48_RS00780 0.12 +0.3 178,628 + +0.9 178,677 - HGI48_RS00780 0.17 +1.6 178,832 + HGI48_RS00780 0.29 -2.1 178,899 + HGI48_RS00780 0.34 -0.5 178,899 + HGI48_RS00780 0.34 -0.4 178,899 + +2.1 178,900 - HGI48_RS00780 0.34 -1.3 178,901 + HGI48_RS00780 0.34 -1.1 178,902 - HGI48_RS00780 0.34 -1.4 178,902 - HGI48_RS00780 0.34 -1.5 178,902 - +2.1 179,264 + HGI48_RS00780 0.63 -1.8
Or see this region's nucleotide sequence