Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00540 and HGI48_RS00545 are separated by 129 nucleotides HGI48_RS00545 and HGI48_RS00550 are separated by 127 nucleotides
HGI48_RS00540: HGI48_RS00540 - YicC family protein, at 129,406 to 130,269
_RS00540
HGI48_RS00545: HGI48_RS00545 - LysR family transcriptional regulator, at 130,399 to 131,307
_RS00545
HGI48_RS00550: HGI48_RS00550 - dipeptidase, at 131,435 to 132,517
_RS00550
Position (kb) 130
131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 129.407 kb on + strand at 129.408 kb on - strand at 129.585 kb on - strand, within HGI48_RS00540 at 129.846 kb on + strand at 129.846 kb on + strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.260 kb on + strand at 130.261 kb on - strand at 130.261 kb on - strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.299 kb on + strand at 130.299 kb on + strand at 130.300 kb on - strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.305 kb on + strand at 130.510 kb on + strand at 130.510 kb on + strand, within HGI48_RS00545 at 130.571 kb on + strand, within HGI48_RS00545 at 130.643 kb on + strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand at 130.903 kb on - strand, within HGI48_RS00545 at 130.903 kb on - strand, within HGI48_RS00545 at 131.076 kb on + strand, within HGI48_RS00545 at 131.076 kb on + strand, within HGI48_RS00545 at 131.077 kb on - strand, within HGI48_RS00545 at 131.077 kb on - strand at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.084 kb on - strand, within HGI48_RS00545 at 131.084 kb on - strand at 131.084 kb on - strand, within HGI48_RS00545 at 131.084 kb on - strand, within HGI48_RS00545 at 131.094 kb on - strand, within HGI48_RS00545 at 131.233 kb on + strand at 131.234 kb on - strand at 131.299 kb on + strand at 131.300 kb on - strand at 131.367 kb on + strand at 131.368 kb on - strand at 131.368 kb on - strand at 131.389 kb on + strand at 131.389 kb on + strand at 131.389 kb on + strand at 131.390 kb on - strand at 131.539 kb on + strand at 131.539 kb on + strand at 131.539 kb on + strand at 131.637 kb on + strand, within HGI48_RS00550 at 131.637 kb on + strand, within HGI48_RS00550 at 131.638 kb on - strand, within HGI48_RS00550 at 131.638 kb on - strand at 131.999 kb on - strand, within HGI48_RS00550 at 132.046 kb on - strand, within HGI48_RS00550 at 132.046 kb on - strand, within HGI48_RS00550 at 132.053 kb on - strand, within HGI48_RS00550
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 129,407 + +0.1 129,408 - -0.5 129,585 - HGI48_RS00540 0.21 +0.9 129,846 + +0.5 129,846 + HGI48_RS00540 0.51 -0.5 129,847 - HGI48_RS00540 0.51 -1.8 129,847 - HGI48_RS00540 0.51 -1.8 129,847 - HGI48_RS00540 0.51 +2.4 129,847 - HGI48_RS00540 0.51 -1.5 129,847 - HGI48_RS00540 0.51 +0.0 129,847 - HGI48_RS00540 0.51 +1.4 129,847 - HGI48_RS00540 0.51 +0.7 130,167 - HGI48_RS00540 0.88 +0.2 130,167 - HGI48_RS00540 0.88 +1.4 130,167 - HGI48_RS00540 0.88 +1.8 130,167 - HGI48_RS00540 0.88 -1.8 130,260 + -2.9 130,261 - +0.9 130,261 - +0.1 130,277 + -0.9 130,277 + +1.1 130,277 + -2.3 130,277 + +0.4 130,277 + +1.0 130,278 - -0.1 130,278 - -0.5 130,278 - +2.3 130,278 - -1.5 130,278 - +1.2 130,278 - +1.7 130,299 + -1.5 130,299 + +0.1 130,300 - -0.5 130,303 + -0.5 130,303 + +0.5 130,303 + +0.3 130,303 + +1.7 130,303 + +1.8 130,303 + +1.9 130,304 - -2.1 130,304 - -0.8 130,304 - +2.0 130,304 - -1.2 130,304 - +0.5 130,304 - +0.5 130,304 - -0.1 130,305 + +2.1 130,510 + +1.5 130,510 + HGI48_RS00545 0.12 -0.1 130,571 + HGI48_RS00545 0.19 +0.3 130,643 + HGI48_RS00545 0.27 +0.2 130,644 - HGI48_RS00545 0.27 -2.7 130,644 - HGI48_RS00545 0.27 -0.2 130,644 - HGI48_RS00545 0.27 +2.1 130,655 + HGI48_RS00545 0.28 +1.3 130,655 + HGI48_RS00545 0.28 +0.4 130,655 + +1.5 130,655 + HGI48_RS00545 0.28 -1.9 130,655 + HGI48_RS00545 0.28 -1.5 130,655 + HGI48_RS00545 0.28 -1.1 130,656 - HGI48_RS00545 0.28 +0.8 130,656 - HGI48_RS00545 0.28 -1.3 130,656 - HGI48_RS00545 0.28 -0.3 130,816 - HGI48_RS00545 0.46 -1.1 130,816 - HGI48_RS00545 0.46 -1.8 130,816 - -0.5 130,903 - HGI48_RS00545 0.55 -1.1 130,903 - HGI48_RS00545 0.55 -0.3 131,076 + HGI48_RS00545 0.74 +0.9 131,076 + HGI48_RS00545 0.74 -1.5 131,077 - HGI48_RS00545 0.75 +0.5 131,077 - +1.9 131,083 + HGI48_RS00545 0.75 -1.1 131,083 + HGI48_RS00545 0.75 -1.3 131,083 + HGI48_RS00545 0.75 +0.9 131,083 + HGI48_RS00545 0.75 -2.4 131,084 - HGI48_RS00545 0.75 -1.1 131,084 - +0.5 131,084 - HGI48_RS00545 0.75 +0.2 131,084 - HGI48_RS00545 0.75 -0.2 131,094 - HGI48_RS00545 0.76 +0.5 131,233 + -0.8 131,234 - +0.7 131,299 + -0.1 131,300 - +0.2 131,367 + +1.5 131,368 - -1.1 131,368 - -1.5 131,389 + -0.5 131,389 + -1.8 131,389 + +1.1 131,390 - -0.2 131,539 + -1.1 131,539 + -1.7 131,539 + +0.1 131,637 + HGI48_RS00550 0.19 -1.5 131,637 + HGI48_RS00550 0.19 -0.4 131,638 - HGI48_RS00550 0.19 +1.2 131,638 - +0.9 131,999 - HGI48_RS00550 0.52 +0.5 132,046 - HGI48_RS00550 0.56 -0.6 132,046 - HGI48_RS00550 0.56 +0.0 132,053 - HGI48_RS00550 0.57 +0.4
Or see this region's nucleotide sequence