Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00430

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
108,335	+		HGI48_RS00425	0.58	+2.1
108,335	+				+2.6
108,336	-		HGI48_RS00425	0.58	-0.0
108,398	+		HGI48_RS00425	0.62	-0.5
108,398	+		HGI48_RS00425	0.62	-0.8
108,398	+		HGI48_RS00425	0.62	+1.0
108,398	+		HGI48_RS00425	0.62	+1.3
108,398	+		HGI48_RS00425	0.62	+2.0
108,399	-		HGI48_RS00425	0.62	+2.5
108,401	+		HGI48_RS00425	0.62	-0.3
108,401	+		HGI48_RS00425	0.62	+1.8
108,401	+		HGI48_RS00425	0.62	+1.4
108,401	+				+3.0
108,402	-				+2.3
108,402	-		HGI48_RS00425	0.62	+0.5
108,465	+		HGI48_RS00425	0.67	-0.0
108,465	+				-1.1
108,466	-		HGI48_RS00425	0.67	+3.0
108,491	-		HGI48_RS00425	0.69	+0.3
108,491	-		HGI48_RS00425	0.69	-1.3
108,491	-		HGI48_RS00425	0.69	-0.8
108,491	-		HGI48_RS00425	0.69	+1.4
108,570	+		HGI48_RS00425	0.74	+0.1
108,570	+		HGI48_RS00425	0.74	+1.9
108,570	+		HGI48_RS00425	0.74	-0.3
108,575	+		HGI48_RS00425	0.75	+1.4
108,575	+		HGI48_RS00425	0.75	+0.3
108,575	+		HGI48_RS00425	0.75	+1.9
108,575	+		HGI48_RS00425	0.75	+1.5
108,575	+		HGI48_RS00425	0.75	+1.5
108,576	-		HGI48_RS00425	0.75	+0.2
108,576	-		HGI48_RS00425	0.75	+1.6
108,576	-		HGI48_RS00425	0.75	+1.4
108,576	-		HGI48_RS00425	0.75	+0.2
108,638	+				+2.1
108,642	-		HGI48_RS00425	0.79	+1.4
108,713	+		HGI48_RS00425	0.85	+1.7
108,713	+		HGI48_RS00425	0.85	+2.0
108,714	-		HGI48_RS00425	0.85	+1.5
108,714	-				+3.6
108,731	+		HGI48_RS00425	0.86	+2.6
108,732	-		HGI48_RS00425	0.86	+1.5
108,735	-		HGI48_RS00425	0.86	-2.5
108,825	-				+1.7
108,909	+				+2.2
108,910	-				-1.5
108,918	-				+0.3
108,927	+				+1.3
108,928	-				+2.4
109,001	-				+1.9
109,036	+				-0.8
109,037	-				+0.5
109,046	+				+0.9
109,047	-				+1.1
109,056	-		HGI48_RS00430	0.10	+0.2
109,056	-		HGI48_RS00430	0.10	+1.7
109,056	-		HGI48_RS00430	0.10	+0.3
109,064	+		HGI48_RS00430	0.11	+0.8
109,064	+		HGI48_RS00430	0.11	+0.9
109,064	+		HGI48_RS00430	0.11	+0.5
109,064	+		HGI48_RS00430	0.11	+1.2
109,064	+				+1.8
109,064	+		HGI48_RS00430	0.11	+2.1
109,065	-		HGI48_RS00430	0.11	+0.9
109,065	-		HGI48_RS00430	0.11	+3.0
109,065	-		HGI48_RS00430	0.11	+0.3
109,065	-		HGI48_RS00430	0.11	+2.5
109,065	-		HGI48_RS00430	0.11	+2.5
109,065	-		HGI48_RS00430	0.11	+0.2
109,081	+		HGI48_RS00430	0.12	+3.2
109,092	+		HGI48_RS00430	0.13	+1.7
109,276	+		HGI48_RS00430	0.27	+1.4
109,276	+		HGI48_RS00430	0.27	+1.7
109,276	+		HGI48_RS00430	0.27	+2.2
109,277	-		HGI48_RS00430	0.27	+1.8
109,277	-		HGI48_RS00430	0.27	+0.8
109,277	-		HGI48_RS00430	0.27	+0.2
109,277	-		HGI48_RS00430	0.27	+1.5
109,277	-		HGI48_RS00430	0.27	+3.4
109,277	-		HGI48_RS00430	0.27	+1.2
109,279	+		HGI48_RS00430	0.27	+1.8
109,279	+		HGI48_RS00430	0.27	+1.8
109,279	+		HGI48_RS00430	0.27	+1.6
109,279	+		HGI48_RS00430	0.27	-0.5
109,279	+		HGI48_RS00430	0.27	+1.6
109,279	+		HGI48_RS00430	0.27	+2.0
109,279	+		HGI48_RS00430	0.27	+0.5
109,279	+		HGI48_RS00430	0.27	+1.9
109,279	+				+0.5
109,280	-				-1.1
109,280	-		HGI48_RS00430	0.27	+2.6
109,280	-		HGI48_RS00430	0.27	+4.1
109,280	-		HGI48_RS00430	0.27	+1.3
109,280	-		HGI48_RS00430	0.27	+0.0
109,280	-		HGI48_RS00430	0.27	+0.5
109,312	-		HGI48_RS00430	0.30	+1.5
109,553	+		HGI48_RS00430	0.48	+1.8
109,554	-				+1.5
109,554	-				+3.3
109,701	+		HGI48_RS00430	0.59	-0.8
109,785	+		HGI48_RS00430	0.65	+1.7
109,785	+		HGI48_RS00430	0.65	+1.9
109,786	-		HGI48_RS00430	0.65	+2.2
109,786	-		HGI48_RS00430	0.65	+0.5
109,786	-		HGI48_RS00430	0.65	+3.5
109,790	-		HGI48_RS00430	0.66	-0.0
109,946	+		HGI48_RS00430	0.78	-0.6
109,946	+		HGI48_RS00430	0.78	-1.5
109,946	+		HGI48_RS00430	0.78	+0.5
109,946	+		HGI48_RS00430	0.78	+1.0
109,946	+		HGI48_RS00430	0.78	-2.3
109,946	+		HGI48_RS00430	0.78	+0.9
109,946	+		HGI48_RS00430	0.78	+1.4
109,947	-		HGI48_RS00430	0.78	+2.3
109,947	-		HGI48_RS00430	0.78	-0.6
109,947	-		HGI48_RS00430	0.78	+2.6
110,101	+		HGI48_RS00430	0.89	+1.2
110,101	+		HGI48_RS00430	0.89	+0.4
110,101	+		HGI48_RS00430	0.89	-2.1
110,101	+		HGI48_RS00430	0.89	-1.5
110,101	+		HGI48_RS00430	0.89	-0.7
110,101	+		HGI48_RS00430	0.89	+0.9
110,101	+		HGI48_RS00430	0.89	+0.5
110,102	-		HGI48_RS00430	0.89	+3.6
110,102	-		HGI48_RS00430	0.89	+2.6
110,103	+		HGI48_RS00430	0.89	+1.8
110,103	+		HGI48_RS00430	0.89	+1.2
110,104	-		HGI48_RS00430	0.90	+1.6
110,104	-		HGI48_RS00430	0.90	+1.8
110,194	-				+2.7
110,220	+				+0.8
110,221	-				+2.8
110,221	-				+0.7
110,395	+		HGI48_RS00435	0.26	-1.1
110,509	+		HGI48_RS00435	0.40	-1.0
110,644	-				-1.1
110,644	-		HGI48_RS00435	0.58	+1.2
110,708	+		HGI48_RS00435	0.66	-0.5
110,708	+		HGI48_RS00435	0.66	-1.9
110,708	+		HGI48_RS00435	0.66	+0.4
110,708	+		HGI48_RS00435	0.66	-0.3
110,708	+		HGI48_RS00435	0.66	-0.1
110,708	+		HGI48_RS00435	0.66	+1.1
110,708	+		HGI48_RS00435	0.66	-1.5
110,708	+		HGI48_RS00435	0.66	-1.1
110,708	+				-1.1
110,708	+				+1.3
110,708	+				-1.1
110,708	+		HGI48_RS00435	0.66	+0.2
110,709	-		HGI48_RS00435	0.66	-0.0
110,709	-		HGI48_RS00435	0.66	+0.2
110,709	-		HGI48_RS00435	0.66	-0.1
110,709	-		HGI48_RS00435	0.66	-0.6
110,709	-		HGI48_RS00435	0.66	-2.8
110,709	-		HGI48_RS00435	0.66	-1.3
110,709	-		HGI48_RS00435	0.66	+0.9
110,709	-		HGI48_RS00435	0.66	+1.3
110,710	+		HGI48_RS00435	0.66	+0.3
110,710	+		HGI48_RS00435	0.66	+0.1
110,710	+		HGI48_RS00435	0.66	+1.3
110,867	+		HGI48_RS00435	0.87	+0.2
110,867	+		HGI48_RS00435	0.87	+0.4
110,868	-		HGI48_RS00435	0.87	-2.1
110,970	+				-2.4
110,970	+				-2.5
110,971	-				-1.1
110,971	-				-0.7
110,971	-				-1.0
110,971	-				-1.1
110,971	-				+0.1
110,974	+				-0.8
110,974	+				-0.8
110,974	+				+0.3
110,974	+				+1.5
110,975	-				-2.7
110,975	-				-1.1
110,975	-				-1.3
110,975	-				+0.5
111,001	-				-0.3
111,001	-				+0.5
111,076	+				-0.1
111,077	-		HGI48_RS00440	0.19	+0.8
111,077	-		HGI48_RS00440	0.19	+1.1
111,088	+		HGI48_RS00440	0.20	-0.2
111,088	+		HGI48_RS00440	0.20	+0.3