Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00185

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
46,771	+				-0.0
46,775	-				+0.1
46,803	+				-0.5
46,815	+				-0.9
46,816	-				-0.2
46,817	+				+0.5
46,817	+				+0.1
46,859	+				-2.3
46,859	+				-0.5
46,859	+				-1.2
46,880	+				-0.1
46,880	+				-0.7
46,881	-				+1.2
46,881	-				+0.5
46,888	+				+0.8
46,888	+				-0.0
46,912	+				+1.3
46,912	+				+1.5
46,913	-				-1.1
46,913	-				+0.5
46,971	+				+0.5
46,971	+				+0.5
46,980	+		HGI48_RS00180	0.16	-0.7
46,980	+		HGI48_RS00180	0.16	+0.0
47,003	+		HGI48_RS00180	0.19	-1.3
47,003	+		HGI48_RS00180	0.19	-0.1
47,003	+		HGI48_RS00180	0.19	-1.2
47,037	+		HGI48_RS00180	0.22	+0.7
47,038	-		HGI48_RS00180	0.22	-1.3
47,044	+		HGI48_RS00180	0.23	-0.4
47,055	+		HGI48_RS00180	0.24	+0.3
47,070	+		HGI48_RS00180	0.26	+1.1
47,098	+		HGI48_RS00180	0.29	-2.1
47,118	-		HGI48_RS00180	0.31	-0.8
47,118	-		HGI48_RS00180	0.31	-3.4
47,118	-		HGI48_RS00180	0.31	-1.4
47,118	-		HGI48_RS00180	0.31	-1.5
47,145	+				+2.1
47,146	-		HGI48_RS00180	0.34	+1.1
47,146	-		HGI48_RS00180	0.34	-2.3
47,180	+		HGI48_RS00180	0.37	-1.5
47,180	+				+1.5
47,180	+		HGI48_RS00180	0.37	+0.1
47,181	-		HGI48_RS00180	0.38	-1.5
47,185	-		HGI48_RS00180	0.38	+0.3
47,231	+		HGI48_RS00180	0.43	+0.6
47,232	-		HGI48_RS00180	0.43	-1.8
47,247	-		HGI48_RS00180	0.45	+1.1
47,247	-		HGI48_RS00180	0.45	+0.4
47,256	+		HGI48_RS00180	0.46	+1.5
47,256	+		HGI48_RS00180	0.46	+1.3
47,257	-		HGI48_RS00180	0.46	-0.9
47,257	-		HGI48_RS00180	0.46	-0.5
47,257	-		HGI48_RS00180	0.46	-0.7
47,262	+		HGI48_RS00180	0.46	+0.5
47,262	+		HGI48_RS00180	0.46	-1.1
47,263	-		HGI48_RS00180	0.46	-0.5
47,263	-		HGI48_RS00180	0.46	-0.5
47,320	+		HGI48_RS00180	0.52	-0.7
47,321	-				+0.5
47,371	+		HGI48_RS00180	0.58	+0.2
47,371	+		HGI48_RS00180	0.58	+1.1
47,380	+		HGI48_RS00180	0.59	-2.5
47,381	-		HGI48_RS00180	0.59	-1.1
47,450	+		HGI48_RS00180	0.66	-1.4
47,450	+		HGI48_RS00180	0.66	+1.0
47,451	-		HGI48_RS00180	0.66	-0.8
47,451	-		HGI48_RS00180	0.66	-2.7
47,466	-		HGI48_RS00180	0.68	-1.7
47,466	-		HGI48_RS00180	0.68	+0.4
47,470	-		HGI48_RS00180	0.68	-1.3
47,567	+		HGI48_RS00180	0.79	+0.9
47,568	-		HGI48_RS00180	0.79	+1.0
47,595	+		HGI48_RS00180	0.82	+0.8
47,595	+		HGI48_RS00180	0.82	+2.0
47,596	-		HGI48_RS00180	0.82	-0.3
47,597	+		HGI48_RS00180	0.82	+0.5
47,598	-		HGI48_RS00180	0.82	+0.5
47,598	-		HGI48_RS00180	0.82	-0.3
47,607	-		HGI48_RS00180	0.83	+0.4
47,607	-		HGI48_RS00180	0.83	-0.7
47,607	-		HGI48_RS00180	0.83	-0.5
47,617	+				+0.5
47,623	+		HGI48_RS00180	0.85	+0.9
47,624	-		HGI48_RS00180	0.85	-0.5
47,631	-		HGI48_RS00180	0.86	-1.8
47,646	+		HGI48_RS00180	0.87	+0.6
47,648	+				+2.7
47,649	-				-0.1
47,649	-		HGI48_RS00180	0.87	-0.2
47,685	+				+1.0
47,704	-				+0.3
47,723	-				+0.4
47,745	+				+1.3
47,768	+				+0.5
47,790	-				-0.9
47,903	-				-1.3
47,959	+				+0.5
47,960	-		HGI48_RS00185	0.12	+0.1
48,065	+				-1.1
48,090	+		HGI48_RS00185	0.20	-0.1
48,151	+		HGI48_RS00185	0.23	-0.8
48,314	+		HGI48_RS00185	0.33	-0.1
48,358	+		HGI48_RS00185	0.36	+0.6
48,398	+		HGI48_RS00185	0.38	+0.8
48,447	+				-0.1
48,448	-		HGI48_RS00185	0.41	-0.1
48,460	+		HGI48_RS00185	0.42	-1.4
48,532	+		HGI48_RS00185	0.46	+0.4
48,532	+		HGI48_RS00185	0.46	+0.2
48,533	-		HGI48_RS00185	0.46	+1.2
48,548	+		HGI48_RS00185	0.47	-0.7
48,729	-		HGI48_RS00185	0.58	+0.0
48,797	+		HGI48_RS00185	0.62	+0.7
48,817	+		HGI48_RS00185	0.64	+0.6
48,896	-		HGI48_RS00185	0.68	+0.3
48,896	-		HGI48_RS00185	0.68	-0.5
48,935	+		HGI48_RS00185	0.71	-0.5
48,936	-		HGI48_RS00185	0.71	-1.8
48,937	+		HGI48_RS00185	0.71	+0.4
48,938	-		HGI48_RS00185	0.71	-0.5
48,938	-		HGI48_RS00185	0.71	-0.3
49,038	-		HGI48_RS00185	0.77	-0.2
49,038	-		HGI48_RS00185	0.77	-0.1
49,082	-		HGI48_RS00185	0.80	-0.1
49,117	+		HGI48_RS00185	0.82	-1.1
49,117	+		HGI48_RS00185	0.82	+0.5
49,118	-		HGI48_RS00185	0.82	-1.1
49,154	-		HGI48_RS00185	0.84	-1.3
49,154	-		HGI48_RS00185	0.84	-1.7
49,247	-		HGI48_RS00185	0.89	+0.5
49,432	+				+1.2
49,432	+				+0.3
49,464	+				-0.2
49,465	-				+0.2
49,499	-		HGI48_RS00190	0.12	-1.8
49,528	+		HGI48_RS00190	0.17	-0.0
49,528	+				+0.9
49,550	+		HGI48_RS00190	0.20	-1.5
49,617	+		HGI48_RS00190	0.31	-2.3
49,657	+		HGI48_RS00190	0.37	-2.5
49,695	-		HGI48_RS00190	0.43	+0.7
49,702	+		HGI48_RS00190	0.44	-2.9
49,720	+		HGI48_RS00190	0.47	-2.5
49,720	+		HGI48_RS00190	0.47	-0.4
49,720	+		HGI48_RS00190	0.47	-0.2
49,720	+		HGI48_RS00190	0.47	-0.1
49,720	+		HGI48_RS00190	0.47	-0.6
49,721	-		HGI48_RS00190	0.47	-1.5
49,721	-		HGI48_RS00190	0.47	+0.5
49,721	-				-1.1
49,830	+		HGI48_RS00190	0.64	+0.7
49,830	+		HGI48_RS00190	0.64	-0.8
49,830	+		HGI48_RS00190	0.64	+0.1
49,831	-		HGI48_RS00190	0.64	-1.7
49,831	-		HGI48_RS00190	0.64	-2.1
49,831	-		HGI48_RS00190	0.64	-0.8
49,846	+		HGI48_RS00190	0.66	-1.8
49,863	+		HGI48_RS00190	0.69	+0.5
49,888	+		HGI48_RS00190	0.73	+0.4
49,888	+		HGI48_RS00190	0.73	-0.0
49,889	-		HGI48_RS00190	0.73	-2.3
49,907	-		HGI48_RS00190	0.75	-0.4
49,937	+		HGI48_RS00190	0.80	+0.7
49,937	+		HGI48_RS00190	0.80	+0.5
49,956	+		HGI48_RS00190	0.83	-1.8
49,957	-		HGI48_RS00190	0.83	-1.1
49,957	-		HGI48_RS00190	0.83	+0.5
49,960	-		HGI48_RS00190	0.84	-1.5
50,004	+				-1.1
50,004	+				+2.5
50,004	+				-0.2
50,004	+				+0.3
50,004	+				+0.3
50,005	-				-2.2
50,005	-				-1.1
50,005	-				-1.1
50,006	+				-1.8
50,006	+				+0.8
50,006	+				-0.1
50,007	-				+0.8
50,007	-				+1.1
50,007	-				-0.5
50,024	-				-0.3
50,049	-				+0.5
50,049	-				-1.3
50,049	-				-0.5
50,050	+				+0.5
50,060	+				-2.3
50,061	-				-0.5
50,061	-				-0.5
50,061	-				+0.4
50,064	-				+0.2
50,118	+				+1.3
50,119	-				+0.2
50,170	+		HGI48_RS00195	0.10	-0.3
50,170	+		HGI48_RS00195	0.10	+1.3
50,170	+		HGI48_RS00195	0.10	+0.3
50,170	+		HGI48_RS00195	0.10	-0.4
50,170	+		HGI48_RS00195	0.10	-0.1
50,171	-		HGI48_RS00195	0.11	-1.2
50,171	-		HGI48_RS00195	0.11	+0.3
50,171	-		HGI48_RS00195	0.11	+0.9
50,171	-		HGI48_RS00195	0.11	-0.9
50,171	-		HGI48_RS00195	0.11	+0.5
50,171	-				+2.8
50,174	+		HGI48_RS00195	0.11	-0.8
50,175	-		HGI48_RS00195	0.11	+1.0
50,175	-		HGI48_RS00195	0.11	-1.3
50,175	-		HGI48_RS00195	0.11	+0.4
50,175	-		HGI48_RS00195	0.11	-0.5
50,199	+		HGI48_RS00195	0.17	-0.8
50,218	+		HGI48_RS00195	0.21	-2.2
50,219	-		HGI48_RS00195	0.21	-1.9
50,219	-		HGI48_RS00195	0.21	-2.3
50,266	-		HGI48_RS00195	0.31	-1.9
50,302	+		HGI48_RS00195	0.39	+0.7
50,302	+		HGI48_RS00195	0.39	-1.1
50,302	+		HGI48_RS00195	0.39	+0.1
50,303	-		HGI48_RS00195	0.39	-1.1
50,337	+		HGI48_RS00195	0.47	-0.3
50,338	-		HGI48_RS00195	0.47	-0.5
50,393	-		HGI48_RS00195	0.59	-0.2
50,421	+		HGI48_RS00195	0.65	-1.5