Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00145 and HGI48_RS00150 overlap by 4 nucleotides HGI48_RS00150 and HGI48_RS00155 are separated by 1 nucleotides HGI48_RS00155 and HGI48_RS00160 are separated by 29 nucleotides
HGI48_RS00145: HGI48_RS00145 - ABC transporter ATP-binding protein, at 36,780 to 38,477
_RS00145
HGI48_RS00150: HGI48_RS00150 - ABC transporter permease, at 38,474 to 39,349
_RS00150
HGI48_RS00155: HGI48_RS00155 - ABC transporter permease, at 39,351 to 40,292
_RS00155
HGI48_RS00160: HGI48_RS00160 - TIGR04028 family ABC transporter substrate-binding protein, at 40,322 to 41,965
_RS00160
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.677 kb on - strand, within HGI48_RS00145 at 37.748 kb on + strand, within HGI48_RS00145 at 37.748 kb on + strand, within HGI48_RS00145 at 37.748 kb on + strand, within HGI48_RS00145 at 37.749 kb on - strand, within HGI48_RS00145 at 37.749 kb on - strand, within HGI48_RS00145 at 37.749 kb on - strand at 37.750 kb on + strand, within HGI48_RS00145 at 37.750 kb on + strand at 37.750 kb on + strand at 37.751 kb on - strand, within HGI48_RS00145 at 37.751 kb on - strand, within HGI48_RS00145 at 37.751 kb on - strand, within HGI48_RS00145 at 37.751 kb on - strand at 37.751 kb on - strand, within HGI48_RS00145 at 37.751 kb on - strand at 37.764 kb on + strand, within HGI48_RS00145 at 37.764 kb on + strand, within HGI48_RS00145 at 37.765 kb on - strand, within HGI48_RS00145 at 38.186 kb on + strand at 38.219 kb on + strand, within HGI48_RS00145 at 38.220 kb on - strand, within HGI48_RS00145 at 38.220 kb on - strand, within HGI48_RS00145 at 38.580 kb on + strand, within HGI48_RS00150 at 38.580 kb on + strand, within HGI48_RS00150 at 38.581 kb on - strand, within HGI48_RS00150 at 38.581 kb on - strand, within HGI48_RS00150 at 38.581 kb on - strand, within HGI48_RS00150 at 38.581 kb on - strand, within HGI48_RS00150 at 38.731 kb on + strand, within HGI48_RS00150 at 38.731 kb on + strand, within HGI48_RS00150 at 38.731 kb on + strand, within HGI48_RS00150 at 38.732 kb on - strand, within HGI48_RS00150 at 38.732 kb on - strand, within HGI48_RS00150 at 38.732 kb on - strand, within HGI48_RS00150 at 38.732 kb on - strand, within HGI48_RS00150 at 38.750 kb on - strand at 39.090 kb on + strand, within HGI48_RS00150 at 39.090 kb on + strand, within HGI48_RS00150 at 39.091 kb on - strand at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.126 kb on + strand, within HGI48_RS00150 at 39.127 kb on - strand, within HGI48_RS00150 at 39.127 kb on - strand, within HGI48_RS00150 at 39.141 kb on + strand, within HGI48_RS00150 at 39.141 kb on + strand at 39.141 kb on + strand, within HGI48_RS00150 at 39.141 kb on + strand, within HGI48_RS00150 at 39.142 kb on - strand, within HGI48_RS00150 at 39.142 kb on - strand, within HGI48_RS00150 at 39.142 kb on - strand, within HGI48_RS00150 at 39.305 kb on - strand at 39.349 kb on + strand at 39.349 kb on + strand at 39.349 kb on + strand at 39.350 kb on - strand at 39.462 kb on + strand, within HGI48_RS00155 at 39.462 kb on + strand, within HGI48_RS00155 at 39.463 kb on - strand, within HGI48_RS00155 at 39.463 kb on - strand, within HGI48_RS00155 at 40.001 kb on + strand, within HGI48_RS00155 at 40.118 kb on - strand, within HGI48_RS00155 at 40.153 kb on - strand, within HGI48_RS00155 at 40.209 kb on + strand at 40.229 kb on + strand at 40.229 kb on + strand at 40.229 kb on + strand at 40.230 kb on - strand at 40.279 kb on + strand at 40.279 kb on + strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.280 kb on - strand at 40.323 kb on + strand at 40.344 kb on + strand at 40.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 37,677 - HGI48_RS00145 0.53 +0.5 37,748 + HGI48_RS00145 0.57 -0.1 37,748 + HGI48_RS00145 0.57 +0.5 37,748 + HGI48_RS00145 0.57 -2.4 37,749 - HGI48_RS00145 0.57 -1.5 37,749 - HGI48_RS00145 0.57 -0.5 37,749 - -1.1 37,750 + HGI48_RS00145 0.57 +0.5 37,750 + -1.1 37,750 + -1.1 37,751 - HGI48_RS00145 0.57 -0.9 37,751 - HGI48_RS00145 0.57 +1.5 37,751 - HGI48_RS00145 0.57 +1.0 37,751 - +2.1 37,751 - HGI48_RS00145 0.57 -1.8 37,751 - -0.5 37,764 + HGI48_RS00145 0.58 +0.3 37,764 + HGI48_RS00145 0.58 +0.8 37,765 - HGI48_RS00145 0.58 -0.2 38,186 + +1.3 38,219 + HGI48_RS00145 0.85 -0.9 38,220 - HGI48_RS00145 0.85 -0.7 38,220 - HGI48_RS00145 0.85 +0.1 38,580 + HGI48_RS00150 0.12 +0.5 38,580 + HGI48_RS00150 0.12 -1.5 38,581 - HGI48_RS00150 0.12 -0.6 38,581 - HGI48_RS00150 0.12 -0.1 38,581 - HGI48_RS00150 0.12 -0.4 38,581 - HGI48_RS00150 0.12 +0.5 38,731 + HGI48_RS00150 0.29 -1.2 38,731 + HGI48_RS00150 0.29 -0.1 38,731 + HGI48_RS00150 0.29 +0.7 38,732 - HGI48_RS00150 0.29 -0.1 38,732 - HGI48_RS00150 0.29 -0.6 38,732 - HGI48_RS00150 0.29 +0.3 38,732 - HGI48_RS00150 0.29 -0.2 38,750 - +0.5 39,090 + HGI48_RS00150 0.70 -0.4 39,090 + HGI48_RS00150 0.70 +1.6 39,091 - +0.5 39,126 + HGI48_RS00150 0.74 -1.7 39,126 + HGI48_RS00150 0.74 -1.3 39,126 + HGI48_RS00150 0.74 -2.8 39,126 + HGI48_RS00150 0.74 -1.3 39,126 + HGI48_RS00150 0.74 -2.5 39,126 + HGI48_RS00150 0.74 -0.5 39,126 + HGI48_RS00150 0.74 +0.8 39,126 + HGI48_RS00150 0.74 -0.3 39,127 - HGI48_RS00150 0.75 -0.4 39,127 - HGI48_RS00150 0.75 -1.1 39,141 + HGI48_RS00150 0.76 -0.6 39,141 + +2.4 39,141 + HGI48_RS00150 0.76 -0.1 39,141 + HGI48_RS00150 0.76 -0.2 39,142 - HGI48_RS00150 0.76 -1.1 39,142 - HGI48_RS00150 0.76 -0.5 39,142 - HGI48_RS00150 0.76 -0.4 39,305 - +0.1 39,349 + +0.5 39,349 + -2.3 39,349 + +2.1 39,350 - +0.5 39,462 + HGI48_RS00155 0.12 -1.8 39,462 + HGI48_RS00155 0.12 +0.7 39,463 - HGI48_RS00155 0.12 +0.8 39,463 - HGI48_RS00155 0.12 -0.1 40,001 + HGI48_RS00155 0.69 +1.5 40,118 - HGI48_RS00155 0.81 +0.3 40,153 - HGI48_RS00155 0.85 -0.1 40,209 + -0.2 40,229 + +0.1 40,229 + -0.8 40,229 + -0.2 40,230 - -0.2 40,279 + -2.1 40,279 + -2.1 40,280 - +1.3 40,280 - -0.9 40,280 - +0.1 40,280 - -0.1 40,323 + -1.8 40,344 + -1.7 40,345 - -0.1
Or see this region's nucleotide sequence