Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
31,380	-		HGI48_RS00115	0.41	+1.3
31,399	-		HGI48_RS00115	0.43	-0.6
31,437	+		HGI48_RS00115	0.47	-1.1
31,438	-		HGI48_RS00115	0.47	+1.1
31,496	+		HGI48_RS00115	0.54	-0.5
31,496	+				+1.5
31,497	-		HGI48_RS00115	0.54	-0.4
31,510	+		HGI48_RS00115	0.55	+1.1
31,510	+		HGI48_RS00115	0.55	-0.9
31,511	-		HGI48_RS00115	0.55	-0.2
31,511	-		HGI48_RS00115	0.55	-0.2
31,511	-		HGI48_RS00115	0.55	-0.1
31,511	-		HGI48_RS00115	0.55	-0.3
31,511	-		HGI48_RS00115	0.55	+0.4
31,511	-		HGI48_RS00115	0.55	+0.0
31,533	+		HGI48_RS00115	0.58	+0.0
31,534	-				-0.1
31,534	-		HGI48_RS00115	0.58	-1.5
31,616	+		HGI48_RS00115	0.67	+0.4
31,617	-		HGI48_RS00115	0.67	+0.5
31,617	-		HGI48_RS00115	0.67	-1.5
31,617	-		HGI48_RS00115	0.67	+0.3
31,617	-		HGI48_RS00115	0.67	+1.8
31,653	+				-0.1
31,653	+		HGI48_RS00115	0.71	-0.3
31,654	-		HGI48_RS00115	0.71	-0.5
31,654	-		HGI48_RS00115	0.71	+1.1
31,710	+		HGI48_RS00115	0.77	-0.5
31,722	+				+0.5
31,722	+		HGI48_RS00115	0.79	-1.1
31,723	-		HGI48_RS00115	0.79	+0.6
31,795	-		HGI48_RS00115	0.87	-2.3
31,803	+		HGI48_RS00115	0.88	+0.0
31,846	+				-0.0
31,846	+				-0.3
31,847	-				-0.5
31,878	+				-0.8
31,878	+				+0.4
31,887	+				+0.1
31,927	+				+0.5
31,947	+				+0.8
31,949	+				-0.8
31,949	+				-0.4
31,949	+				-0.1
31,949	+				-0.2
31,949	+				-0.5
31,950	-				-0.3
31,950	-				+0.0
31,950	-				-2.7
31,950	-				-0.7
31,950	-				-1.3
31,950	-				-0.3
31,950	-				-0.8
31,950	-				-0.1
31,953	+				-0.9
31,953	+				-2.7
31,953	+				-0.9
31,953	+				+0.2
31,953	+				-1.8
31,954	-				-1.5
31,954	-				+0.8
31,954	-				-1.1
31,954	-				-2.3
31,954	-				+0.1
31,954	-				+0.4
32,075	+				-0.2
32,105	+				+0.3
32,105	+				+0.3
32,122	-				-0.7
32,133	+				+0.2
32,133	+				-0.4
32,133	+				-0.2
32,133	+				+1.1
32,134	-				-0.1
32,134	-				-2.1
32,134	-				-0.4
32,134	-				+0.9
32,134	-				-0.2
32,134	-				+0.5
32,134	-				-1.5
32,134	-				-1.5
32,134	-				+1.5
32,134	-				-0.2
32,160	+				-1.5
32,257	+				-0.0
32,257	+				+1.4
32,258	-				-1.2
32,274	+				-0.5
32,274	+				+0.3
32,274	+				-0.0
32,274	+				-0.2
32,275	-				+0.5
32,275	-				-0.5
32,286	+				+0.1
32,286	+				-1.8
32,332	+				-0.4
32,332	+				-0.1
32,333	-				-0.5
32,333	-				-1.8
32,333	-				-0.5
32,444	-		HGI48_RS00120	0.17	+0.1
32,444	-		HGI48_RS00120	0.17	-1.6
32,527	+		HGI48_RS00120	0.35	+0.7
32,527	+		HGI48_RS00120	0.35	+2.0
32,527	+		HGI48_RS00120	0.35	+0.7
32,527	+				-0.5
32,527	+				+1.5
32,527	+		HGI48_RS00120	0.35	-0.2
32,527	+		HGI48_RS00120	0.35	-1.2
32,528	-		HGI48_RS00120	0.35	-0.1
32,528	-		HGI48_RS00120	0.35	+1.2
32,528	-		HGI48_RS00120	0.35	+0.8
32,528	-		HGI48_RS00120	0.35	+1.3
32,528	-		HGI48_RS00120	0.35	+1.2
32,528	-		HGI48_RS00120	0.35	-1.6
32,528	-				-0.5
32,587	+				+1.3
32,600	+		HGI48_RS00120	0.50	+1.2
32,600	+		HGI48_RS00120	0.50	-2.1
32,600	+		HGI48_RS00120	0.50	-2.9
32,600	+				-1.1
32,600	+		HGI48_RS00120	0.50	-0.3
32,600	+		HGI48_RS00120	0.50	-0.1
32,600	+		HGI48_RS00120	0.50	+0.2
32,601	-		HGI48_RS00120	0.50	-0.1
32,601	-		HGI48_RS00120	0.50	+0.1
32,606	+		HGI48_RS00120	0.51	-1.7
32,606	+		HGI48_RS00120	0.51	+1.2
32,607	-		HGI48_RS00120	0.52	+0.3
32,607	-				-0.5
32,607	-				+1.3
32,710	-		HGI48_RS00120	0.74	-1.8
32,710	-				+0.9
32,794	+				-1.5
32,795	-				-1.9
32,795	-				+1.2
32,795	-				+0.1
32,852	+				-2.3
32,853	-				+0.2
32,890	+				+0.5
32,890	+				-0.1
32,890	+				-0.5
32,890	+				+0.2
32,891	-				-2.0
32,891	-				+0.4
32,891	-				+0.5
32,891	-				+3.7
32,891	-				-3.6
32,896	+				+0.1
33,064	+				+0.5
33,064	+				-1.5
33,064	+				-1.9
33,064	+				+1.3
33,064	+				+0.1
33,064	+				-0.5
33,064	+				-0.6
33,064	+				+0.2
33,064	+				-0.5
33,065	-				-2.9
33,065	-				-0.5
33,097	-				+0.3
33,102	+				-3.1
33,102	+				+0.2
33,102	+				-1.0
33,102	+				+0.5
33,102	+				-0.9
33,102	+				-2.1
33,102	+				-1.7
33,103	-				-1.5
33,103	-				-0.8
33,103	-				+0.5
33,103	-				+0.2
33,110	-				-1.7
33,110	-				+0.3
33,120	+				-0.4
33,121	-				+1.3
33,121	-				+0.6
33,136	-		HGI48_RS00125	0.11	+0.5
33,136	-		HGI48_RS00125	0.11	+0.3
33,361	-		HGI48_RS00125	0.89	+0.1
33,361	-		HGI48_RS00125	0.89	+0.9
33,361	-		HGI48_RS00125	0.89	-0.1
33,361	-		HGI48_RS00125	0.89	-1.1
33,361	-		HGI48_RS00125	0.89	-0.2
33,361	-				+1.7
33,361	-		HGI48_RS00125	0.89	-1.5
33,401	+				+1.5
33,402	-				+0.3
33,402	-				-0.1
33,402	-				-2.7
33,402	-				-0.5
33,402	-				+1.0
33,437	+				+0.3
33,437	+				-1.1
33,437	+				-0.5
33,437	+				-1.1
33,437	+				+0.5
33,437	+				-0.8
33,438	-				-1.0
33,438	-				-0.5
33,438	-				-0.2
33,443	+				+0.7
33,444	-				+0.3
33,498	+				+2.1
33,499	-				-0.8
33,499	-				-2.1
33,499	-				-1.9
33,499	-				-1.3
33,499	-				-0.2
33,501	-				-0.5
33,511	-				-1.5
33,511	-				-1.1
33,511	-				-1.8
33,511	-				-1.1
33,511	-				+1.0
33,528	+				-0.0
33,528	+				+0.1
33,528	+				-0.3
33,528	+				+0.1
33,528	+				-3.1
33,533	+				-0.7
33,533	+				+1.2
33,533	+				-0.2
33,533	+				+1.0
33,533	+				-0.1
33,533	+				+0.3
33,534	-				-2.1
33,534	-				-2.3
33,534	-				-0.7
33,534	-				+0.3
33,543	+				+0.9
33,544	-				+0.0
33,544	-				-0.5
33,553	+				-1.1
33,553	+				-0.3
33,554	-				+1.4
33,623	+				-1.1
33,623	+				+0.5
33,623	+				-0.3
33,673	+		HGI48_RS00130	0.14	-0.2
33,674	-		HGI48_RS00130	0.14	-2.9
33,674	-		HGI48_RS00130	0.14	+0.4
33,674	-		HGI48_RS00130	0.14	-1.4
33,716	+		HGI48_RS00130	0.19	-2.3
33,716	+		HGI48_RS00130	0.19	-2.1
33,716	+		HGI48_RS00130	0.19	-0.5
33,716	+		HGI48_RS00130	0.19	+0.2
33,717	-		HGI48_RS00130	0.19	-1.3
33,717	-		HGI48_RS00130	0.19	-0.7
33,717	-		HGI48_RS00130	0.19	-1.8
33,717	-		HGI48_RS00130	0.19	+0.1
33,717	-		HGI48_RS00130	0.19	-0.9