Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21720

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS21715 and HGI48_RS21720 are separated by 2 nucleotidesHGI48_RS21720 and HGI48_RS21725 overlap by 37 nucleotidesHGI48_RS21725 and HGI48_RS21730 are separated by 18 nucleotides HGI48_RS21715: HGI48_RS21715 - membrane protein insertase YidC, at 4,848,633 to 4,850,264 _RS21715 HGI48_RS21720: HGI48_RS21720 - membrane protein insertion efficiency factor YidD, at 4,850,267 to 4,850,524 _RS21720 HGI48_RS21725: HGI48_RS21725 - ribonuclease P protein component, at 4,850,488 to 4,850,847 _RS21725 HGI48_RS21730: HGI48_RS21730 - 50S ribosomal protein L34, at 4,850,866 to 4,851,006 _RS21730 Position (kb) 4850 4851Strain fitness (log2 ratio) -2 -1 0 1at 4850.372 kb on + strand, within HGI48_RS21720at 4850.372 kb on + strand, within HGI48_RS21720at 4850.372 kb on + strand, within HGI48_RS21720at 4850.372 kb on + strand, within HGI48_RS21720at 4850.373 kb on - strand, within HGI48_RS21720at 4850.458 kb on + strand, within HGI48_RS21720at 4850.459 kb on - strand, within HGI48_RS21720at 4851.208 kb on + strandat 4851.209 kb on - strandat 4851.223 kb on + strandat 4851.234 kb on + strandat 4851.234 kb on + strandat 4851.236 kb on + strandat 4851.237 kb on - strandat 4851.313 kb on + strandat 4851.325 kb on - strandat 4851.325 kb on - strandat 4851.360 kb on + strandat 4851.400 kb on - strandat 4851.405 kb on + strandat 4851.406 kb on - strandat 4851.406 kb on - strandat 4851.411 kb on + strandat 4851.412 kb on - strandat 4851.412 kb on - strandat 4851.412 kb on - strandat 4851.489 kb on + strandat 4851.490 kb on - strandat 4851.490 kb on - strandat 4851.490 kb on - strandat 4851.492 kb on + strandat 4851.492 kb on + strandat 4851.492 kb on + strandat 4851.492 kb on + strandat 4851.492 kb on + strandat 4851.493 kb on - strandat 4851.493 kb on - strandat 4851.493 kb on - strandat 4851.493 kb on - strandat 4851.494 kb on + strandat 4851.494 kb on + strandat 4851.494 kb on + strandat 4851.494 kb on + strandat 4851.495 kb on - strandat 4851.495 kb on - strandat 4851.495 kb on - strandat 4851.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,850,372 + HGI48_RS21720 0.41 -0.3
4,850,372 + HGI48_RS21720 0.41 +0.2
4,850,372 + HGI48_RS21720 0.41 -1.1
4,850,372 + HGI48_RS21720 0.41 +1.5
4,850,373 - HGI48_RS21720 0.41 -0.9
4,850,458 + HGI48_RS21720 0.74 -0.5
4,850,459 - HGI48_RS21720 0.74 -0.9
4,851,208 + -1.2
4,851,209 - -0.9
4,851,223 + -1.1
4,851,234 + -0.2
4,851,234 + -0.1
4,851,236 + -2.6
4,851,237 - +0.7
4,851,313 + +0.4
4,851,325 - -0.1
4,851,325 - -0.1
4,851,360 + -1.9
4,851,400 - -0.3
4,851,405 + -0.5
4,851,406 - -0.1
4,851,406 - -1.3
4,851,411 + -1.7
4,851,412 - +0.7
4,851,412 - -1.1
4,851,412 - +0.4
4,851,489 + +0.1
4,851,490 - +0.2
4,851,490 - +0.3
4,851,490 - +0.7
4,851,492 + -0.6
4,851,492 + -0.1
4,851,492 + -0.3
4,851,492 + -1.0
4,851,492 + +0.4
4,851,493 - -2.1
4,851,493 - +0.7
4,851,493 - +0.8
4,851,493 - -0.1
4,851,494 + -2.1
4,851,494 + -0.1
4,851,494 + -1.9
4,851,494 + +1.0
4,851,495 - -0.2
4,851,495 - -0.2
4,851,495 - -0.9
4,851,524 + -1.5

Or see this region's nucleotide sequence