Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21715 and HGI48_RS21720 are separated by 2 nucleotides HGI48_RS21720 and HGI48_RS21725 overlap by 37 nucleotides HGI48_RS21725 and HGI48_RS21730 are separated by 18 nucleotides
HGI48_RS21715: HGI48_RS21715 - membrane protein insertase YidC, at 4,848,633 to 4,850,264
_RS21715
HGI48_RS21720: HGI48_RS21720 - membrane protein insertion efficiency factor YidD, at 4,850,267 to 4,850,524
_RS21720
HGI48_RS21725: HGI48_RS21725 - ribonuclease P protein component, at 4,850,488 to 4,850,847
_RS21725
HGI48_RS21730: HGI48_RS21730 - 50S ribosomal protein L34, at 4,850,866 to 4,851,006
_RS21730
Position (kb)
4850
4851 Strain fitness (log2 ratio)
-2
-1
0
1 at 4850.372 kb on + strand, within HGI48_RS21720 at 4850.372 kb on + strand, within HGI48_RS21720 at 4850.372 kb on + strand, within HGI48_RS21720 at 4850.372 kb on + strand, within HGI48_RS21720 at 4850.373 kb on - strand, within HGI48_RS21720 at 4850.458 kb on + strand, within HGI48_RS21720 at 4850.459 kb on - strand, within HGI48_RS21720 at 4851.208 kb on + strand at 4851.209 kb on - strand at 4851.223 kb on + strand at 4851.234 kb on + strand at 4851.234 kb on + strand at 4851.236 kb on + strand at 4851.237 kb on - strand at 4851.313 kb on + strand at 4851.325 kb on - strand at 4851.325 kb on - strand at 4851.360 kb on + strand at 4851.400 kb on - strand at 4851.405 kb on + strand at 4851.406 kb on - strand at 4851.406 kb on - strand at 4851.411 kb on + strand at 4851.412 kb on - strand at 4851.412 kb on - strand at 4851.412 kb on - strand at 4851.489 kb on + strand at 4851.490 kb on - strand at 4851.490 kb on - strand at 4851.490 kb on - strand at 4851.492 kb on + strand at 4851.492 kb on + strand at 4851.492 kb on + strand at 4851.492 kb on + strand at 4851.492 kb on + strand at 4851.493 kb on - strand at 4851.493 kb on - strand at 4851.493 kb on - strand at 4851.493 kb on - strand at 4851.494 kb on + strand at 4851.494 kb on + strand at 4851.494 kb on + strand at 4851.494 kb on + strand at 4851.495 kb on - strand at 4851.495 kb on - strand at 4851.495 kb on - strand at 4851.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,850,372 + HGI48_RS21720 0.41 -0.3 4,850,372 + HGI48_RS21720 0.41 +0.2 4,850,372 + HGI48_RS21720 0.41 -1.1 4,850,372 + HGI48_RS21720 0.41 +1.5 4,850,373 - HGI48_RS21720 0.41 -0.9 4,850,458 + HGI48_RS21720 0.74 -0.5 4,850,459 - HGI48_RS21720 0.74 -0.9 4,851,208 + -1.2 4,851,209 - -0.9 4,851,223 + -1.1 4,851,234 + -0.2 4,851,234 + -0.1 4,851,236 + -2.6 4,851,237 - +0.7 4,851,313 + +0.4 4,851,325 - -0.1 4,851,325 - -0.1 4,851,360 + -1.9 4,851,400 - -0.3 4,851,405 + -0.5 4,851,406 - -0.1 4,851,406 - -1.3 4,851,411 + -1.7 4,851,412 - +0.7 4,851,412 - -1.1 4,851,412 - +0.4 4,851,489 + +0.1 4,851,490 - +0.2 4,851,490 - +0.3 4,851,490 - +0.7 4,851,492 + -0.6 4,851,492 + -0.1 4,851,492 + -0.3 4,851,492 + -1.0 4,851,492 + +0.4 4,851,493 - -2.1 4,851,493 - +0.7 4,851,493 - +0.8 4,851,493 - -0.1 4,851,494 + -2.1 4,851,494 + -0.1 4,851,494 + -1.9 4,851,494 + +1.0 4,851,495 - -0.2 4,851,495 - -0.2 4,851,495 - -0.9 4,851,524 + -1.5
Or see this region's nucleotide sequence