Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS21135 and HGI48_RS21140 are separated by 4 nucleotides HGI48_RS21140 and HGI48_RS21145 are separated by 25 nucleotides HGI48_RS21145 and HGI48_RS21150 overlap by 4 nucleotides HGI48_RS21150 and HGI48_RS21155 are separated by 85 nucleotides HGI48_RS21155 and HGI48_RS21160 are separated by 156 nucleotides
HGI48_RS21135: HGI48_RS21135 - biliverdin-producing heme oxygenase, at 4,716,768 to 4,717,418
_RS21135
HGI48_RS21140: HGI48_RS21140 - SDR family oxidoreductase, at 4,717,423 to 4,718,217
_RS21140
HGI48_RS21145: HGI48_RS21145 - tetratricopeptide repeat protein, at 4,718,243 to 4,718,893
_RS21145
HGI48_RS21150: HGI48_RS21150 - hypothetical protein, at 4,718,890 to 4,719,240
_RS21150
HGI48_RS21155: HGI48_RS21155 - tRNA-Pro, at 4,719,326 to 4,719,402
_RS21155
HGI48_RS21160: HGI48_RS21160 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 4,719,559 to 4,721,241
_RS21160
Position (kb) 4718
4719 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4717.283 kb on + strand, within HGI48_RS21135 at 4717.284 kb on - strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.352 kb on + strand, within HGI48_RS21135 at 4717.353 kb on - strand, within HGI48_RS21135 at 4717.384 kb on - strand at 4717.384 kb on - strand at 4717.417 kb on - strand at 4717.417 kb on - strand at 4717.430 kb on + strand at 4717.430 kb on + strand at 4717.438 kb on - strand at 4717.444 kb on - strand at 4717.444 kb on - strand at 4717.444 kb on - strand at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand at 4717.517 kb on + strand, within HGI48_RS21140 at 4717.517 kb on + strand at 4717.517 kb on + strand at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.518 kb on - strand, within HGI48_RS21140 at 4717.519 kb on + strand, within HGI48_RS21140 at 4717.519 kb on + strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.520 kb on - strand at 4717.520 kb on - strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.590 kb on + strand, within HGI48_RS21140 at 4717.591 kb on - strand, within HGI48_RS21140 at 4717.677 kb on + strand, within HGI48_RS21140 at 4717.753 kb on - strand, within HGI48_RS21140 at 4717.753 kb on - strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.868 kb on + strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.869 kb on - strand, within HGI48_RS21140 at 4717.871 kb on - strand at 4717.871 kb on - strand, within HGI48_RS21140 at 4717.932 kb on + strand, within HGI48_RS21140 at 4717.933 kb on - strand, within HGI48_RS21140 at 4717.933 kb on - strand, within HGI48_RS21140 at 4717.941 kb on + strand, within HGI48_RS21140 at 4717.941 kb on + strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.942 kb on - strand, within HGI48_RS21140 at 4717.947 kb on - strand at 4718.130 kb on + strand, within HGI48_RS21140 at 4718.130 kb on + strand at 4718.130 kb on + strand, within HGI48_RS21140 at 4718.131 kb on - strand, within HGI48_RS21140 at 4718.131 kb on - strand, within HGI48_RS21140 at 4718.262 kb on + strand at 4718.305 kb on - strand at 4718.314 kb on - strand, within HGI48_RS21145 at 4718.376 kb on - strand at 4718.376 kb on - strand, within HGI48_RS21145 at 4718.376 kb on - strand, within HGI48_RS21145 at 4718.395 kb on + strand, within HGI48_RS21145 at 4718.472 kb on + strand, within HGI48_RS21145 at 4718.472 kb on + strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.473 kb on - strand, within HGI48_RS21145 at 4718.558 kb on - strand, within HGI48_RS21145 at 4718.558 kb on - strand, within HGI48_RS21145 at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.609 kb on + strand at 4718.609 kb on + strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.610 kb on - strand at 4718.610 kb on - strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.630 kb on + strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.631 kb on - strand, within HGI48_RS21145 at 4718.634 kb on - strand, within HGI48_RS21145 at 4718.687 kb on + strand, within HGI48_RS21145 at 4718.687 kb on + strand, within HGI48_RS21145 at 4718.688 kb on - strand, within HGI48_RS21145 at 4718.709 kb on + strand, within HGI48_RS21145 at 4718.742 kb on - strand, within HGI48_RS21145 at 4718.742 kb on - strand, within HGI48_RS21145 at 4718.789 kb on + strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.790 kb on - strand, within HGI48_RS21145 at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.888 kb on + strand at 4718.889 kb on - strand at 4718.889 kb on - strand at 4718.891 kb on + strand at 4718.891 kb on + strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4718.892 kb on - strand at 4719.000 kb on + strand, within HGI48_RS21150 at 4719.289 kb on + strand at 4719.320 kb on - strand at 4719.416 kb on + strand at 4719.416 kb on + strand at 4719.417 kb on - strand at 4719.420 kb on - strand at 4719.420 kb on - strand at 4719.420 kb on - strand at 4719.431 kb on - strand at 4719.481 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.517 kb on + strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.518 kb on - strand at 4719.519 kb on + strand at 4719.519 kb on + strand at 4719.520 kb on - strand at 4719.520 kb on - strand at 4719.520 kb on - strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.621 kb on + strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.622 kb on - strand at 4719.623 kb on + strand at 4719.623 kb on + strand at 4719.624 kb on - strand at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.737 kb on + strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.738 kb on - strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand, within HGI48_RS21160 at 4719.818 kb on + strand at 4719.819 kb on - strand, within HGI48_RS21160 at 4719.819 kb on - strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.854 kb on + strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160 at 4719.855 kb on - strand, within HGI48_RS21160
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,717,283 + HGI48_RS21135 0.79 +0.4 4,717,284 - HGI48_RS21135 0.79 -0.0 4,717,352 + HGI48_RS21135 0.90 -0.3 4,717,352 + HGI48_RS21135 0.90 -0.5 4,717,352 + HGI48_RS21135 0.90 -1.4 4,717,353 - HGI48_RS21135 0.90 -0.5 4,717,384 - -0.6 4,717,384 - +0.7 4,717,417 - -0.5 4,717,417 - -1.3 4,717,430 + +0.5 4,717,430 + +0.1 4,717,438 - -0.3 4,717,444 - -0.1 4,717,444 - -0.0 4,717,444 - -0.3 4,717,517 + HGI48_RS21140 0.12 +1.7 4,717,517 + HGI48_RS21140 0.12 -0.6 4,717,517 + HGI48_RS21140 0.12 -0.1 4,717,517 + HGI48_RS21140 0.12 -1.1 4,717,517 + HGI48_RS21140 0.12 -0.3 4,717,517 + +0.1 4,717,517 + HGI48_RS21140 0.12 +1.0 4,717,517 + +2.0 4,717,517 + +2.7 4,717,518 - HGI48_RS21140 0.12 -1.6 4,717,518 - HGI48_RS21140 0.12 -0.6 4,717,518 - HGI48_RS21140 0.12 -0.6 4,717,518 - HGI48_RS21140 0.12 -0.1 4,717,518 - HGI48_RS21140 0.12 +0.4 4,717,518 - HGI48_RS21140 0.12 -1.1 4,717,519 + HGI48_RS21140 0.12 +0.9 4,717,519 + HGI48_RS21140 0.12 -0.1 4,717,520 - HGI48_RS21140 0.12 -0.1 4,717,520 - HGI48_RS21140 0.12 -1.6 4,717,520 - HGI48_RS21140 0.12 +0.3 4,717,520 - +1.4 4,717,520 - HGI48_RS21140 0.12 -0.0 4,717,590 + HGI48_RS21140 0.21 -0.5 4,717,590 + HGI48_RS21140 0.21 -0.3 4,717,590 + HGI48_RS21140 0.21 -1.1 4,717,591 - HGI48_RS21140 0.21 +0.2 4,717,677 + HGI48_RS21140 0.32 +0.0 4,717,753 - HGI48_RS21140 0.42 +1.3 4,717,753 - HGI48_RS21140 0.42 +0.7 4,717,868 + HGI48_RS21140 0.56 -0.3 4,717,868 + HGI48_RS21140 0.56 +0.5 4,717,868 + HGI48_RS21140 0.56 +0.3 4,717,868 + HGI48_RS21140 0.56 -1.0 4,717,868 + HGI48_RS21140 0.56 -0.5 4,717,868 + HGI48_RS21140 0.56 -0.9 4,717,868 + HGI48_RS21140 0.56 +0.9 4,717,868 + HGI48_RS21140 0.56 -1.3 4,717,868 + HGI48_RS21140 0.56 +1.0 4,717,868 + HGI48_RS21140 0.56 +1.4 4,717,868 + HGI48_RS21140 0.56 +1.5 4,717,868 + HGI48_RS21140 0.56 +0.2 4,717,868 + HGI48_RS21140 0.56 -0.7 4,717,868 + HGI48_RS21140 0.56 -0.4 4,717,868 + HGI48_RS21140 0.56 -1.6 4,717,868 + HGI48_RS21140 0.56 +0.6 4,717,868 + HGI48_RS21140 0.56 +0.4 4,717,868 + HGI48_RS21140 0.56 -0.2 4,717,868 + HGI48_RS21140 0.56 +0.8 4,717,868 + HGI48_RS21140 0.56 -0.3 4,717,868 + HGI48_RS21140 0.56 +0.1 4,717,868 + HGI48_RS21140 0.56 -0.3 4,717,869 - HGI48_RS21140 0.56 +0.2 4,717,869 - HGI48_RS21140 0.56 +0.4 4,717,869 - HGI48_RS21140 0.56 -0.0 4,717,869 - HGI48_RS21140 0.56 +0.4 4,717,869 - HGI48_RS21140 0.56 +0.1 4,717,869 - HGI48_RS21140 0.56 +1.4 4,717,869 - -0.9 4,717,869 - HGI48_RS21140 0.56 -0.1 4,717,869 - HGI48_RS21140 0.56 +0.1 4,717,869 - HGI48_RS21140 0.56 +0.7 4,717,869 - HGI48_RS21140 0.56 -1.0 4,717,869 - HGI48_RS21140 0.56 -0.5 4,717,869 - HGI48_RS21140 0.56 +0.2 4,717,869 - HGI48_RS21140 0.56 -0.1 4,717,869 - HGI48_RS21140 0.56 +0.3 4,717,871 - +0.1 4,717,871 - HGI48_RS21140 0.56 -0.5 4,717,932 + HGI48_RS21140 0.64 -0.7 4,717,933 - HGI48_RS21140 0.64 +0.9 4,717,933 - HGI48_RS21140 0.64 -1.6 4,717,941 + HGI48_RS21140 0.65 +0.9 4,717,941 + HGI48_RS21140 0.65 +0.0 4,717,942 - HGI48_RS21140 0.65 +0.4 4,717,942 - HGI48_RS21140 0.65 -1.3 4,717,942 - HGI48_RS21140 0.65 +1.2 4,717,947 - +0.7 4,718,130 + HGI48_RS21140 0.89 +1.4 4,718,130 + -0.3 4,718,130 + HGI48_RS21140 0.89 -1.3 4,718,131 - HGI48_RS21140 0.89 +0.1 4,718,131 - HGI48_RS21140 0.89 -1.4 4,718,262 + -0.5 4,718,305 - -1.7 4,718,314 - HGI48_RS21145 0.11 -0.9 4,718,376 - +1.7 4,718,376 - HGI48_RS21145 0.20 -0.6 4,718,376 - HGI48_RS21145 0.20 +0.1 4,718,395 + HGI48_RS21145 0.23 +0.4 4,718,472 + HGI48_RS21145 0.35 +0.9 4,718,472 + HGI48_RS21145 0.35 -1.1 4,718,473 - HGI48_RS21145 0.35 -1.5 4,718,473 - HGI48_RS21145 0.35 -0.5 4,718,473 - HGI48_RS21145 0.35 +0.3 4,718,473 - HGI48_RS21145 0.35 +1.3 4,718,558 - HGI48_RS21145 0.48 -1.3 4,718,558 - HGI48_RS21145 0.48 +0.0 4,718,609 + HGI48_RS21145 0.56 -0.6 4,718,609 + HGI48_RS21145 0.56 +1.0 4,718,609 + +1.4 4,718,609 + HGI48_RS21145 0.56 -1.8 4,718,610 - HGI48_RS21145 0.56 +0.5 4,718,610 - HGI48_RS21145 0.56 +0.0 4,718,610 - HGI48_RS21145 0.56 -1.3 4,718,610 - +2.7 4,718,610 - HGI48_RS21145 0.56 -0.4 4,718,630 + HGI48_RS21145 0.59 +0.5 4,718,630 + HGI48_RS21145 0.59 +0.9 4,718,630 + HGI48_RS21145 0.59 -0.6 4,718,631 - HGI48_RS21145 0.60 +0.8 4,718,631 - HGI48_RS21145 0.60 -0.8 4,718,631 - HGI48_RS21145 0.60 +0.6 4,718,631 - HGI48_RS21145 0.60 +0.2 4,718,631 - HGI48_RS21145 0.60 -0.1 4,718,634 - HGI48_RS21145 0.60 +0.5 4,718,687 + HGI48_RS21145 0.68 -0.5 4,718,687 + HGI48_RS21145 0.68 -0.8 4,718,688 - HGI48_RS21145 0.68 -0.8 4,718,709 + HGI48_RS21145 0.72 -0.7 4,718,742 - HGI48_RS21145 0.77 -0.7 4,718,742 - HGI48_RS21145 0.77 -0.2 4,718,789 + HGI48_RS21145 0.84 -0.8 4,718,790 - HGI48_RS21145 0.84 +0.7 4,718,790 - HGI48_RS21145 0.84 -0.5 4,718,790 - HGI48_RS21145 0.84 -1.1 4,718,888 + -1.2 4,718,888 + +0.4 4,718,888 + +1.7 4,718,888 + -1.3 4,718,888 + +0.4 4,718,889 - -0.5 4,718,889 - +0.1 4,718,891 + -0.5 4,718,891 + -0.0 4,718,892 - -0.3 4,718,892 - -0.5 4,718,892 - -0.1 4,718,892 - +0.1 4,719,000 + HGI48_RS21150 0.31 -1.9 4,719,289 + -1.3 4,719,320 - -0.4 4,719,416 + +0.7 4,719,416 + +0.4 4,719,417 - -0.1 4,719,420 - +1.8 4,719,420 - -0.0 4,719,420 - -1.2 4,719,431 - +0.9 4,719,481 + -0.4 4,719,517 + -0.0 4,719,517 + -0.3 4,719,517 + +0.9 4,719,517 + -0.5 4,719,517 + -1.2 4,719,517 + -0.8 4,719,518 - +0.5 4,719,518 - -0.4 4,719,518 - +2.5 4,719,518 - +1.1 4,719,518 - -1.1 4,719,519 + -2.3 4,719,519 + -0.7 4,719,520 - -1.3 4,719,520 - -0.3 4,719,520 - -0.9 4,719,621 + +0.3 4,719,621 + -0.3 4,719,621 + +0.5 4,719,621 + +0.7 4,719,621 + +0.5 4,719,621 + -0.5 4,719,621 + -0.9 4,719,621 + +0.4 4,719,621 + +0.3 4,719,621 + -0.4 4,719,621 + -0.9 4,719,621 + -0.6 4,719,622 - +0.7 4,719,622 - +1.3 4,719,622 - +0.2 4,719,622 - +1.1 4,719,622 - -1.1 4,719,622 - -0.9 4,719,622 - -0.3 4,719,622 - +1.3 4,719,623 + +0.2 4,719,623 + +2.6 4,719,624 - -1.1 4,719,737 + HGI48_RS21160 0.11 -1.6 4,719,737 + HGI48_RS21160 0.11 +0.3 4,719,737 + HGI48_RS21160 0.11 -1.3 4,719,737 + HGI48_RS21160 0.11 +1.0 4,719,737 + HGI48_RS21160 0.11 -0.4 4,719,738 - HGI48_RS21160 0.11 +0.2 4,719,738 - HGI48_RS21160 0.11 -1.8 4,719,738 - HGI48_RS21160 0.11 +0.7 4,719,818 + HGI48_RS21160 0.15 -0.3 4,719,818 + HGI48_RS21160 0.15 -3.0 4,719,818 + HGI48_RS21160 0.15 -2.9 4,719,818 + +1.4 4,719,819 - HGI48_RS21160 0.15 +1.0 4,719,819 - HGI48_RS21160 0.15 +0.0 4,719,854 + HGI48_RS21160 0.18 +0.5 4,719,854 + HGI48_RS21160 0.18 +0.1 4,719,854 + HGI48_RS21160 0.18 -2.0 4,719,855 - HGI48_RS21160 0.18 +1.1 4,719,855 - HGI48_RS21160 0.18 -0.2 4,719,855 - HGI48_RS21160 0.18 -0.2
Or see this region's nucleotide sequence