Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20190

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,507,704	+				+1.1
4,507,738	+		HGI48_RS20185	0.18	-0.8
4,507,739	-		HGI48_RS20185	0.18	+0.1
4,507,739	-		HGI48_RS20185	0.18	+0.2
4,507,748	-		HGI48_RS20185	0.19	-0.7
4,507,821	-		HGI48_RS20185	0.25	-0.3
4,507,875	+		HGI48_RS20185	0.30	-0.1
4,507,875	+		HGI48_RS20185	0.30	-0.3
4,507,876	-		HGI48_RS20185	0.30	+0.3
4,507,887	-		HGI48_RS20185	0.31	+0.2
4,507,941	+		HGI48_RS20185	0.36	+0.6
4,507,941	+		HGI48_RS20185	0.36	-0.3
4,507,941	+		HGI48_RS20185	0.36	-0.2
4,507,942	-		HGI48_RS20185	0.36	+0.2
4,507,995	+		HGI48_RS20185	0.41	-0.3
4,507,995	+		HGI48_RS20185	0.41	-0.3
4,507,995	+		HGI48_RS20185	0.41	-1.3
4,507,996	-		HGI48_RS20185	0.41	+0.5
4,507,996	-		HGI48_RS20185	0.41	-0.5
4,507,996	-		HGI48_RS20185	0.41	-0.4
4,507,996	-		HGI48_RS20185	0.41	+0.3
4,507,996	-		HGI48_RS20185	0.41	+0.2
4,507,996	-		HGI48_RS20185	0.41	+0.3
4,507,996	-		HGI48_RS20185	0.41	-0.6
4,507,996	-				-0.3
4,507,996	-		HGI48_RS20185	0.41	-1.5
4,507,996	-		HGI48_RS20185	0.41	-1.7
4,507,999	+		HGI48_RS20185	0.41	+1.2
4,508,092	+		HGI48_RS20185	0.49	+0.3
4,508,317	+		HGI48_RS20185	0.69	-0.1
4,508,317	+		HGI48_RS20185	0.69	-1.8
4,508,317	+		HGI48_RS20185	0.69	+1.5
4,508,317	+		HGI48_RS20185	0.69	-0.3
4,508,317	+		HGI48_RS20185	0.69	+0.3
4,508,318	-		HGI48_RS20185	0.69	-0.6
4,508,430	+		HGI48_RS20185	0.79	-0.9
4,508,430	+		HGI48_RS20185	0.79	-0.3
4,508,430	+		HGI48_RS20185	0.79	+1.1
4,508,430	+		HGI48_RS20185	0.79	-1.1
4,508,431	-		HGI48_RS20185	0.79	-1.1
4,508,519	+		HGI48_RS20185	0.87	+0.8
4,508,519	+				+1.7
4,508,520	-		HGI48_RS20185	0.87	-0.7
4,508,520	-				+0.7
4,508,520	-		HGI48_RS20185	0.87	-0.9
4,508,520	-				+1.1
4,508,520	-		HGI48_RS20185	0.87	-0.3
4,508,538	+		HGI48_RS20185	0.89	-0.2
4,508,539	-		HGI48_RS20185	0.89	+0.1
4,508,539	-		HGI48_RS20185	0.89	-0.5
4,508,617	+				+0.5
4,508,617	+				+1.1
4,508,617	+				-0.6
4,508,618	-				-2.5
4,508,618	-				+1.5
4,508,618	-				-3.0
4,508,618	-				-1.3
4,508,618	-				+1.6
4,508,618	-				+1.7
4,508,618	-				+1.1
4,508,618	-				-0.1
4,508,618	-				-0.5
4,508,619	+				+0.7
4,508,619	+				-0.2
4,508,619	+				+0.2
4,508,619	+				+0.7
4,508,619	+				-0.9
4,508,619	+				+1.0
4,508,619	+				+0.7
4,508,619	+				+1.2
4,508,619	+				+1.3
4,508,620	-				-0.4
4,508,620	-				-0.7
4,508,620	-				+2.7
4,508,620	-				-0.3
4,508,620	-				+0.5
4,508,620	-				-1.8
4,508,620	-				-1.7
4,508,653	+				-0.9
4,508,752	+				+1.1
4,508,753	-				+0.7
4,509,025	+		HGI48_RS20190	0.45	-0.1
4,509,276	+		HGI48_RS20190	0.80	+0.7
4,509,276	+		HGI48_RS20190	0.80	+0.2
4,509,276	+		HGI48_RS20190	0.80	+0.3
4,509,277	-		HGI48_RS20190	0.80	+0.9
4,509,277	-		HGI48_RS20190	0.80	-0.1
4,509,277	-		HGI48_RS20190	0.80	-1.7
4,509,283	+		HGI48_RS20190	0.81	-0.2
4,509,283	+		HGI48_RS20190	0.81	+0.7
4,509,347	+				-1.7
4,509,347	+				-1.5
4,509,348	-				-1.7
4,509,348	-				+0.1
4,509,348	-				-0.6
4,509,416	+				-0.6
4,509,416	+				+0.2
4,509,416	+				-1.9
4,509,416	+				-0.1
4,509,416	+				-2.1
4,509,416	+				-0.5
4,509,416	+				-0.9
4,509,416	+				-0.1
4,509,416	+				-0.3
4,509,416	+				+0.2
4,509,416	+				-2.5
4,509,416	+				-0.8
4,509,416	-				-0.3
4,509,417	-				-0.6
4,509,417	-				+0.5
4,509,417	-				+3.0
4,509,417	-				+0.9
4,509,417	-				-0.2
4,509,417	-				+0.7
4,509,417	-				-0.6
4,509,417	-				+0.7
4,509,417	-				-0.2
4,509,417	-				-0.9
4,509,417	-				-1.0
4,509,417	-				-0.8
4,509,417	-				-0.3
4,509,417	-				-0.1
4,509,638	-		HGI48_RS20195	0.14	-0.6
4,509,908	-		HGI48_RS20195	0.35	-0.2
4,509,959	+		HGI48_RS20195	0.39	-1.7
4,510,064	+		HGI48_RS20195	0.47	-0.3
4,510,064	+		HGI48_RS20195	0.47	-0.1
4,510,064	+		HGI48_RS20195	0.47	-1.7
4,510,064	+		HGI48_RS20195	0.47	+1.0
4,510,065	-				+2.4
4,510,065	-		HGI48_RS20195	0.47	+0.7
4,510,065	-		HGI48_RS20195	0.47	+0.6
4,510,065	-		HGI48_RS20195	0.47	-0.3
4,510,126	+		HGI48_RS20195	0.52	-0.3
4,510,126	+		HGI48_RS20195	0.52	-0.6
4,510,126	+		HGI48_RS20195	0.52	+1.0
4,510,126	+		HGI48_RS20195	0.52	-0.3
4,510,126	+		HGI48_RS20195	0.52	-0.1
4,510,126	+		HGI48_RS20195	0.52	-2.9
4,510,127	-		HGI48_RS20195	0.52	-2.5
4,510,127	-		HGI48_RS20195	0.52	+1.2