Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS17845 and HGI48_RS17850 are separated by 13 nucleotides HGI48_RS17850 and HGI48_RS17855 are separated by 132 nucleotides
HGI48_RS17845: HGI48_RS17845 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 4,005,084 to 4,006,946
_RS17845
HGI48_RS17850: HGI48_RS17850 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 4,006,960 to 4,009,623
_RS17850
HGI48_RS17855: HGI48_RS17855 - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 4,009,756 to 4,010,520
_RS17855
Position (kb)
4006
4007
4008
4009
4010 Strain fitness (log2 ratio)
-2
-1
0
1 at 4009.636 kb on - strand at 4009.803 kb on + strand at 4009.804 kb on - strand at 4009.828 kb on + strand at 4009.828 kb on + strand at 4009.829 kb on - strand at 4009.829 kb on - strand at 4010.012 kb on - strand, within HGI48_RS17855 at 4010.012 kb on - strand, within HGI48_RS17855 at 4010.030 kb on - strand, within HGI48_RS17855 at 4010.030 kb on - strand, within HGI48_RS17855 at 4010.035 kb on - strand, within HGI48_RS17855 at 4010.171 kb on - strand, within HGI48_RS17855 at 4010.180 kb on + strand, within HGI48_RS17855 at 4010.181 kb on - strand, within HGI48_RS17855 at 4010.181 kb on - strand, within HGI48_RS17855 at 4010.181 kb on - strand, within HGI48_RS17855 at 4010.181 kb on - strand, within HGI48_RS17855 at 4010.181 kb on - strand, within HGI48_RS17855 at 4010.183 kb on + strand, within HGI48_RS17855 at 4010.184 kb on - strand, within HGI48_RS17855 at 4010.248 kb on - strand, within HGI48_RS17855 at 4010.616 kb on + strand at 4010.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,009,636 - -1.8 4,009,803 + +0.5 4,009,804 - +0.7 4,009,828 + +0.1 4,009,828 + -0.8 4,009,829 - -1.1 4,009,829 - +0.5 4,010,012 - HGI48_RS17855 0.33 +0.3 4,010,012 - HGI48_RS17855 0.33 -0.7 4,010,030 - HGI48_RS17855 0.36 -0.1 4,010,030 - HGI48_RS17855 0.36 +1.0 4,010,035 - HGI48_RS17855 0.36 +0.5 4,010,171 - HGI48_RS17855 0.54 +1.1 4,010,180 + HGI48_RS17855 0.55 +1.2 4,010,181 - HGI48_RS17855 0.56 -1.1 4,010,181 - HGI48_RS17855 0.56 -1.2 4,010,181 - HGI48_RS17855 0.56 +1.0 4,010,181 - HGI48_RS17855 0.56 +0.9 4,010,181 - HGI48_RS17855 0.56 -0.5 4,010,183 + HGI48_RS17855 0.56 +0.7 4,010,184 - HGI48_RS17855 0.56 -1.5 4,010,248 - HGI48_RS17855 0.64 -0.2 4,010,616 + +1.5 4,010,617 - -0.3
Or see this region's nucleotide sequence