Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16415

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,676,492	+				-0.8
3,676,520	-				+0.4
3,677,049	-		HGI48_RS16410	0.62	-2.2
3,677,106	+		HGI48_RS16410	0.67	-1.6
3,677,106	+		HGI48_RS16410	0.67	-0.2
3,677,106	+		HGI48_RS16410	0.67	-0.6
3,677,107	-				-1.2
3,677,107	-		HGI48_RS16410	0.67	+0.1
3,677,107	-		HGI48_RS16410	0.67	+0.4
3,677,107	-		HGI48_RS16410	0.67	-0.4
3,677,107	-		HGI48_RS16410	0.67	-2.6
3,677,107	-				+1.4
3,677,107	-		HGI48_RS16410	0.67	-0.1
3,677,258	+		HGI48_RS16410	0.82	+0.6
3,677,259	-		HGI48_RS16410	0.82	-2.4
3,677,313	-		HGI48_RS16410	0.87	-0.6
3,677,413	+				-0.2
3,677,413	+				-0.2
3,677,413	+				-1.0
3,677,413	+				+0.4
3,677,414	-				+0.8
3,677,414	-				-0.4
3,677,414	-				-1.9
3,677,414	-				-1.2
3,677,414	-				-0.4
3,677,435	+				+1.2
3,677,436	-				+0.1
3,677,436	-				-1.4
3,677,443	-				-0.7
3,677,443	-				-0.3
3,677,485	+				-0.5
3,677,485	+				+0.8
3,677,491	+				-0.4
3,677,492	-				+1.6
3,677,492	-				-1.4
3,677,694	-		HGI48_RS16415	0.26	-0.1
3,677,720	+		HGI48_RS16415	0.29	-0.1
3,677,720	+		HGI48_RS16415	0.29	-0.2
3,677,720	+		HGI48_RS16415	0.29	-1.6
3,677,721	-		HGI48_RS16415	0.29	+0.3
3,677,824	+		HGI48_RS16415	0.40	+0.7
3,677,824	+		HGI48_RS16415	0.40	-1.4
3,677,825	-		HGI48_RS16415	0.40	-2.0
3,677,825	-		HGI48_RS16415	0.40	+0.7
3,677,831	+		HGI48_RS16415	0.40	-0.8
3,677,866	+		HGI48_RS16415	0.44	-1.9
3,677,866	+		HGI48_RS16415	0.44	-1.0
3,677,867	-		HGI48_RS16415	0.44	-0.9
3,677,867	-		HGI48_RS16415	0.44	+0.9
3,678,070	+		HGI48_RS16415	0.64	-0.9
3,678,071	-		HGI48_RS16415	0.64	+0.0
3,678,071	-		HGI48_RS16415	0.64	+0.0
3,678,071	-		HGI48_RS16415	0.64	-0.6
3,678,121	+		HGI48_RS16415	0.69	-2.2
3,678,121	+		HGI48_RS16415	0.69	-0.8
3,678,121	+		HGI48_RS16415	0.69	+0.7
3,678,122	-		HGI48_RS16415	0.70	+0.7
3,678,122	-		HGI48_RS16415	0.70	+0.4
3,678,122	-		HGI48_RS16415	0.70	+1.0
3,678,122	-		HGI48_RS16415	0.70	+0.9
3,678,122	-		HGI48_RS16415	0.70	+0.4
3,678,122	-		HGI48_RS16415	0.70	-0.6
3,678,231	+		HGI48_RS16415	0.81	-0.4
3,678,237	-		HGI48_RS16415	0.81	-2.2
3,678,271	+		HGI48_RS16415	0.85	+0.2
3,678,271	+				+0.4
3,678,271	+		HGI48_RS16415	0.85	-2.4
3,678,272	-		HGI48_RS16415	0.85	-0.5
3,678,272	-		HGI48_RS16415	0.85	+1.0
3,678,272	-				-1.2
3,678,276	+		HGI48_RS16415	0.85	-0.6
3,678,276	+		HGI48_RS16415	0.85	+0.8
3,678,276	+		HGI48_RS16415	0.85	+0.4
3,678,276	+		HGI48_RS16415	0.85	-0.1
3,678,276	+		HGI48_RS16415	0.85	-1.6
3,678,277	-		HGI48_RS16415	0.85	-0.1
3,678,277	-				+2.2
3,678,277	-		HGI48_RS16415	0.85	-0.2
3,678,294	-		HGI48_RS16415	0.87	-0.9
3,678,294	-		HGI48_RS16415	0.87	+0.4
3,678,294	-		HGI48_RS16415	0.87	-0.8
3,678,332	+				-0.2
3,678,332	+				+1.0
3,678,332	+				-0.6
3,678,332	+				+0.2
3,678,333	-				+0.4
3,678,333	-				-0.3
3,678,333	-				+0.0
3,678,333	-				-0.2
3,678,452	+				+0.4
3,678,452	+				+0.2
3,678,452	+				-1.6
3,678,452	+				-0.0
3,678,453	-				-0.1
3,678,486	-				-0.2
3,678,522	+				+1.8
3,678,571	+				+2.0
3,678,572	-				-0.2
3,678,577	+				+0.1
3,678,577	+				+0.8
3,678,620	+				-2.2
3,678,681	+				-0.2
3,678,697	-				-0.2
3,678,697	-				+0.4
3,678,697	-				+0.1
3,678,782	-				-0.7
3,678,797	+				-0.6
3,678,797	+				+0.3
3,678,798	-				-1.0
3,678,798	-				+0.9
3,678,798	-				-1.2
3,678,798	-				+0.4
3,678,841	+				-1.6
3,678,850	+				-0.7
3,678,851	-				+0.4
3,678,851	-				-0.6
3,678,851	-				+0.4
3,678,851	-				-1.4
3,678,851	-				-0.3
3,678,878	+				+1.0
3,678,879	-				-0.7
3,678,997	+		HGI48_RS16420	0.12	+0.7
3,678,997	+		HGI48_RS16420	0.12	+1.4
3,678,998	-				+0.4
3,678,998	-		HGI48_RS16420	0.12	-0.1
3,679,073	-		HGI48_RS16420	0.18	+0.4
3,679,102	+		HGI48_RS16420	0.20	-0.9
3,679,103	-				+0.4
3,679,103	-		HGI48_RS16420	0.20	-0.7
3,679,103	-		HGI48_RS16420	0.20	+1.1
3,679,127	+		HGI48_RS16420	0.21	+0.1
3,679,127	+		HGI48_RS16420	0.21	-2.4
3,679,127	+		HGI48_RS16420	0.21	+1.4
3,679,127	+		HGI48_RS16420	0.21	+1.2
3,679,127	+				+0.4
3,679,128	-		HGI48_RS16420	0.22	-1.6
3,679,128	-		HGI48_RS16420	0.22	+0.1
3,679,128	-				+1.4
3,679,128	-		HGI48_RS16420	0.22	-3.5
3,679,128	-		HGI48_RS16420	0.22	-0.3
3,679,199	+		HGI48_RS16420	0.27	+0.4
3,679,199	+		HGI48_RS16420	0.27	-0.4
3,679,200	-		HGI48_RS16420	0.27	-1.3