Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15030

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,381,349	-		HGI48_RS15025	0.46	-1.5
3,381,400	-		HGI48_RS15025	0.50	-0.4
3,381,400	-		HGI48_RS15025	0.50	+0.2
3,381,546	-		HGI48_RS15025	0.61	+0.7
3,381,554	+		HGI48_RS15025	0.62	-0.6
3,381,554	+		HGI48_RS15025	0.62	-1.1
3,381,554	+		HGI48_RS15025	0.62	+0.0
3,381,554	+		HGI48_RS15025	0.62	+0.3
3,381,554	+		HGI48_RS15025	0.62	+1.2
3,381,555	-		HGI48_RS15025	0.62	+0.1
3,381,555	-		HGI48_RS15025	0.62	-0.4
3,381,555	-				+2.6
3,381,631	-		HGI48_RS15025	0.68	-0.2
3,381,631	-		HGI48_RS15025	0.68	-0.3
3,381,641	+		HGI48_RS15025	0.69	+1.0
3,381,690	+		HGI48_RS15025	0.72	+0.2
3,381,752	+		HGI48_RS15025	0.77	-0.2
3,381,790	+		HGI48_RS15025	0.80	-1.3
3,381,791	-		HGI48_RS15025	0.80	-1.3
3,381,847	-		HGI48_RS15025	0.84	+0.5
3,381,896	+		HGI48_RS15025	0.88	-1.7
3,381,896	+				+0.9
3,381,896	+		HGI48_RS15025	0.88	-0.6
3,381,896	+		HGI48_RS15025	0.88	-0.1
3,381,897	-		HGI48_RS15025	0.88	-0.4
3,382,045	-				-0.4
3,382,045	-				-0.2
3,382,101	+				-0.1
3,382,101	+				-1.8
3,382,126	+				-1.0
3,382,126	+				-1.3
3,382,335	-		HGI48_RS15030	0.17	-0.5
3,382,405	+		HGI48_RS15030	0.22	-1.0
3,382,406	-		HGI48_RS15030	0.22	-0.5
3,382,471	-		HGI48_RS15030	0.28	-2.8
3,382,477	+		HGI48_RS15030	0.28	-1.0
3,382,477	+		HGI48_RS15030	0.28	-0.7
3,382,478	-		HGI48_RS15030	0.28	+0.3
3,382,478	-				+0.7
3,382,478	-		HGI48_RS15030	0.28	+0.0
3,382,478	-				+1.9
3,382,680	-		HGI48_RS15030	0.44	-1.7
3,382,687	+		HGI48_RS15030	0.45	+0.3
3,382,701	+		HGI48_RS15030	0.46	-0.7
3,382,796	+		HGI48_RS15030	0.54	+0.3
3,382,840	+		HGI48_RS15030	0.57	+0.5
3,382,840	+		HGI48_RS15030	0.57	-0.2
3,382,840	+		HGI48_RS15030	0.57	-2.7
3,382,841	-				-1.3
3,382,841	-		HGI48_RS15030	0.57	+0.1
3,382,841	-		HGI48_RS15030	0.57	-0.7
3,382,843	+		HGI48_RS15030	0.57	-2.5
3,382,843	+				+0.9
3,382,844	-		HGI48_RS15030	0.57	-0.4
3,382,844	-		HGI48_RS15030	0.57	-1.7
3,382,844	-		HGI48_RS15030	0.57	+1.5
3,382,909	+		HGI48_RS15030	0.63	-0.4
3,382,909	+		HGI48_RS15030	0.63	-2.5
3,382,996	+		HGI48_RS15030	0.69	+0.8
3,382,997	-		HGI48_RS15030	0.70	+1.0
3,382,997	-				+1.3
3,382,997	-		HGI48_RS15030	0.70	-0.4
3,383,006	+		HGI48_RS15030	0.70	-0.5
3,383,222	-		HGI48_RS15030	0.87	-0.2
3,383,308	-				-0.7
3,383,308	-				+0.3
3,383,457	+				-0.3
3,383,457	+				-0.9
3,383,459	+				-1.7
3,383,460	-				-0.4
3,383,503	-				-0.7
3,383,544	+				+0.1
3,383,582	+				+1.8
3,383,606	-				+0.5
3,383,736	+				-0.9
3,383,736	+				+0.3
3,383,736	+				+0.4
3,383,736	+				-0.1
3,383,736	+				+0.3
3,383,737	-				-0.2
3,383,737	-				-0.4
3,383,743	-				+0.1
3,383,788	+				+1.5
3,383,789	-				+0.1
3,383,789	-				+0.5
3,383,955	+		HGI48_RS15035	0.21	-0.7
3,383,976	-		HGI48_RS15035	0.23	+0.6
3,383,985	-		HGI48_RS15035	0.23	-0.5
3,383,992	+		HGI48_RS15035	0.24	+0.0
3,383,992	+		HGI48_RS15035	0.24	+0.6
3,383,992	+		HGI48_RS15035	0.24	-1.1
3,383,992	+		HGI48_RS15035	0.24	-0.1
3,383,992	+		HGI48_RS15035	0.24	+0.3
3,383,992	+		HGI48_RS15035	0.24	-0.3
3,383,992	+				-0.3
3,383,993	-		HGI48_RS15035	0.24	+0.3
3,383,993	-		HGI48_RS15035	0.24	-1.7
3,383,993	-		HGI48_RS15035	0.24	+0.9
3,383,993	-		HGI48_RS15035	0.24	-0.4
3,383,993	-		HGI48_RS15035	0.24	+0.3
3,383,993	-		HGI48_RS15035	0.24	-0.6
3,384,025	+				+0.3
3,384,026	-		HGI48_RS15035	0.27	+1.2
3,384,026	-		HGI48_RS15035	0.27	-1.0
3,384,172	-		HGI48_RS15035	0.40	+0.9
3,384,186	+		HGI48_RS15035	0.41	+0.0
3,384,186	+		HGI48_RS15035	0.41	-0.7
3,384,187	-		HGI48_RS15035	0.42	-2.7
3,384,187	-		HGI48_RS15035	0.42	+0.3
3,384,187	-		HGI48_RS15035	0.42	+0.3
3,384,290	+		HGI48_RS15035	0.51	+0.0
3,384,290	+		HGI48_RS15035	0.51	+0.3
3,384,290	+		HGI48_RS15035	0.51	-0.3
3,384,290	+		HGI48_RS15035	0.51	+0.1
3,384,290	+		HGI48_RS15035	0.51	-2.0
3,384,291	-		HGI48_RS15035	0.51	+0.2
3,384,291	-		HGI48_RS15035	0.51	-0.7
3,384,291	-		HGI48_RS15035	0.51	+0.6
3,384,291	-		HGI48_RS15035	0.51	-1.3
3,384,291	-				+0.7
3,384,291	-		HGI48_RS15035	0.51	-0.9
3,384,291	-		HGI48_RS15035	0.51	-2.7