Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13975

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,123,621	+		HGI48_RS13970	0.58	-0.8
3,123,622	-		HGI48_RS13970	0.59	+0.2
3,123,622	-		HGI48_RS13970	0.59	-0.7
3,123,622	-		HGI48_RS13970	0.59	+0.6
3,123,622	-		HGI48_RS13970	0.59	+0.4
3,123,622	-		HGI48_RS13970	0.59	-0.2
3,123,622	-		HGI48_RS13970	0.59	-0.2
3,123,622	-		HGI48_RS13970	0.59	-0.4
3,123,683	-		HGI48_RS13970	0.66	+0.2
3,123,697	-		HGI48_RS13970	0.68	+0.7
3,123,819	+		HGI48_RS13970	0.84	-0.9
3,123,819	+		HGI48_RS13970	0.84	+0.0
3,123,820	-		HGI48_RS13970	0.84	+0.0
3,123,820	-		HGI48_RS13970	0.84	-1.8
3,123,820	-		HGI48_RS13970	0.84	+0.4
3,123,820	-		HGI48_RS13970	0.84	+0.2
3,123,824	-				-0.4
3,123,824	-		HGI48_RS13970	0.85	-0.1
3,123,925	+				-2.8
3,123,926	-				+1.2
3,123,926	-				-1.8
3,123,980	+				-0.8
3,124,041	+				-0.8
3,124,041	+				+0.2
3,124,042	-				+0.9
3,124,042	-				-1.0
3,124,042	-				+0.2
3,124,042	-				-1.3
3,124,045	+				+0.2
3,124,045	+				+0.7
3,124,113	-				-0.4
3,124,113	-				+0.0
3,124,155	+				+0.4
3,124,156	-				+0.1
3,124,191	-				+0.8
3,124,196	+				+0.2
3,124,196	+				-0.1
3,124,197	-				+0.4
3,124,197	-				-2.9
3,124,197	-				-2.1
3,124,197	-				-1.4
3,124,197	-				-0.3
3,124,200	+				-0.0
3,124,200	+				-0.0
3,124,201	-				+0.0
3,124,201	-				-0.1
3,124,201	-				-0.0
3,124,201	-				-0.4
3,124,204	-				-0.1
3,124,210	+				-0.1
3,124,210	+				-0.2
3,124,210	+				+2.2
3,124,210	+				-0.3
3,124,211	-				+0.8
3,124,301	+				-0.2
3,124,301	+				+1.7
3,124,301	+				+0.4
3,124,301	+				+0.8
3,124,301	+				+1.2
3,124,301	+				+0.6
3,124,302	-				-0.2
3,124,302	-				-0.8
3,124,302	-				+0.4
3,124,302	-				+0.7
3,124,302	-				-0.5
3,124,302	-				-0.6
3,124,328	+				-1.4
3,124,328	+				+0.2
3,124,328	+				+0.9
3,124,328	+				-1.1
3,124,329	-				+0.3
3,124,329	-				+0.1
3,124,329	-				+0.2
3,124,329	-				+0.2
3,124,332	+				+0.7
3,124,333	-				-0.9
3,124,333	-				+0.0
3,124,398	+				-0.6
3,124,399	-				-0.8
3,124,399	-				-2.6
3,124,407	+				-1.4
3,124,407	+				-0.4
3,124,407	+				-0.5
3,124,407	+				-1.2
3,124,407	+				+0.6
3,124,408	-				+0.5
3,124,408	-				-1.2
3,124,408	-				-1.5
3,124,408	-				-1.1
3,124,408	-				+0.5
3,124,448	+				+0.1
3,124,449	-				-1.0
3,124,449	-				+0.2
3,124,457	+				-1.4
3,124,458	-				-0.6
3,124,458	-				+0.1
3,124,459	+				+1.2
3,124,459	+				-2.1
3,124,460	-				-1.2
3,124,460	-				-1.4
3,124,460	-				+0.6
3,124,522	+				+1.1
3,124,522	+				+0.2
3,124,523	-				-0.5
3,124,573	-				-1.4
3,124,584	+				+0.6
3,124,699	+		HGI48_RS13975	0.12	-1.5
3,124,701	+		HGI48_RS13975	0.12	-0.1
3,124,716	+		HGI48_RS13975	0.14	-0.5
3,124,716	+		HGI48_RS13975	0.14	-1.3
3,124,716	+				+0.6
3,124,717	-		HGI48_RS13975	0.14	-0.8
3,124,717	-		HGI48_RS13975	0.14	-3.2
3,124,717	-		HGI48_RS13975	0.14	-2.1
3,124,717	-		HGI48_RS13975	0.14	+0.6
3,124,717	-		HGI48_RS13975	0.14	-0.0
3,124,748	+		HGI48_RS13975	0.16	-2.9
3,124,749	-		HGI48_RS13975	0.16	-2.5
3,124,752	+		HGI48_RS13975	0.17	-1.8
3,124,752	+		HGI48_RS13975	0.17	-0.3
3,124,769	-				+0.6
3,124,769	-		HGI48_RS13975	0.18	-1.1
3,124,918	-		HGI48_RS13975	0.31	-0.8
3,124,918	-		HGI48_RS13975	0.31	+0.2
3,124,974	-		HGI48_RS13975	0.36	+0.5
3,125,171	+		HGI48_RS13975	0.53	+0.2
3,125,172	-		HGI48_RS13975	0.53	+0.0
3,125,385	-		HGI48_RS13975	0.72	+0.6
3,125,385	-		HGI48_RS13975	0.72	-0.2
3,125,385	-		HGI48_RS13975	0.72	+0.1
3,125,387	-		HGI48_RS13975	0.72	-1.8
3,125,387	-		HGI48_RS13975	0.72	-0.6
3,125,387	-		HGI48_RS13975	0.72	+0.2
3,125,387	-		HGI48_RS13975	0.72	-0.8
3,125,615	-				+0.1
3,125,615	-				-2.1
3,125,620	-				-0.0
3,125,637	+				-0.5
3,125,638	-				-0.1
3,125,638	-				-1.8
3,125,646	-				+0.4
3,125,646	-				+0.8
3,125,753	-				-0.4
3,125,753	-				+0.6
3,125,786	+				+0.3
3,125,787	-				-0.1
3,125,821	-				+0.2
3,125,828	+				+1.0
3,125,829	-				-0.4
3,125,829	-				-0.3
3,125,833	+				-1.1
3,125,834	-				+1.7
3,125,834	-				-0.9
3,125,901	+				-0.1
3,125,901	+				+1.2
3,125,901	+				+0.3
3,125,901	+				-0.1
3,125,902	-				-0.1
3,125,902	-				-1.4
3,126,072	-		HGI48_RS13980	0.12	-2.4
3,126,212	-		HGI48_RS13980	0.17	+0.3
3,126,234	-		HGI48_RS13980	0.18	+0.8
3,126,246	-				+1.2
3,126,269	+		HGI48_RS13980	0.19	+0.0
3,126,270	-		HGI48_RS13980	0.19	-0.8
3,126,270	-		HGI48_RS13980	0.19	+1.1
3,126,310	+				+1.0
3,126,310	+		HGI48_RS13980	0.20	-0.5
3,126,310	+		HGI48_RS13980	0.20	+1.1
3,126,310	+		HGI48_RS13980	0.20	-0.6
3,126,310	+		HGI48_RS13980	0.20	-0.3
3,126,311	-		HGI48_RS13980	0.20	+0.5
3,126,311	-		HGI48_RS13980	0.20	+0.4
3,126,315	-		HGI48_RS13980	0.21	-0.1
3,126,403	+		HGI48_RS13980	0.24	+0.2
3,126,403	+		HGI48_RS13980	0.24	-0.8
3,126,432	-		HGI48_RS13980	0.25	+0.4
3,126,459	+		HGI48_RS13980	0.25	-0.6
3,126,459	+		HGI48_RS13980	0.25	+0.2
3,126,478	+		HGI48_RS13980	0.26	-1.8
3,126,478	+		HGI48_RS13980	0.26	-0.3
3,126,548	+		HGI48_RS13980	0.28	-0.8