Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10990

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,382,395	-		HGI48_RS10980	0.76	-2.3
2,382,436	-		HGI48_RS10980	0.80	-0.1
2,382,439	+		HGI48_RS10980	0.80	-0.3
2,382,439	+				+0.8
2,382,440	-		HGI48_RS10980	0.80	+0.5
2,382,464	+				+1.9
2,382,464	+		HGI48_RS10980	0.82	-0.4
2,382,577	+				-0.7
2,382,578	-				-2.5
2,382,581	+				+0.1
2,382,581	+				+0.7
2,382,582	-				-2.3
2,382,582	-				+0.9
2,382,596	+				+1.1
2,382,597	-				+0.8
2,382,597	-				+0.1
2,382,597	-				-1.3
2,382,610	+				-0.9
2,382,674	+				+0.1
2,382,708	+				+1.0
2,382,709	-				+0.1
2,382,748	+				-1.9
2,382,749	-				+0.1
2,382,775	-				+0.6
2,382,815	+		HGI48_RS10985	0.11	-2.3
2,382,822	+		HGI48_RS10985	0.12	-0.1
2,382,823	-		HGI48_RS10985	0.13	-1.9
2,382,887	-		HGI48_RS10985	0.24	+0.4
2,382,966	-		HGI48_RS10985	0.38	-1.7
2,382,966	-		HGI48_RS10985	0.38	-0.4
2,382,976	+		HGI48_RS10985	0.39	+1.1
2,382,976	+		HGI48_RS10985	0.39	-0.4
2,382,976	+		HGI48_RS10985	0.39	-2.3
2,382,976	+		HGI48_RS10985	0.39	-1.2
2,382,977	-		HGI48_RS10985	0.39	-0.2
2,382,977	-		HGI48_RS10985	0.39	-1.3
2,382,977	-		HGI48_RS10985	0.39	+0.4
2,383,004	+		HGI48_RS10985	0.44	+0.5
2,383,004	+		HGI48_RS10985	0.44	+0.2
2,383,004	+		HGI48_RS10985	0.44	-0.1
2,383,009	-		HGI48_RS10985	0.45	-1.3
2,383,009	-		HGI48_RS10985	0.45	+0.5
2,383,009	-				-0.5
2,383,026	+		HGI48_RS10985	0.48	-0.7
2,383,026	+		HGI48_RS10985	0.48	-1.3
2,383,026	+		HGI48_RS10985	0.48	-0.1
2,383,027	-				+2.1
2,383,027	-		HGI48_RS10985	0.48	+0.4
2,383,078	-				+1.6
2,383,078	-		HGI48_RS10985	0.57	+0.4
2,383,081	+				+0.5
2,383,081	+		HGI48_RS10985	0.58	+0.1
2,383,081	+		HGI48_RS10985	0.58	-0.2
2,383,082	-				+1.3
2,383,082	-		HGI48_RS10985	0.58	+0.4
2,383,082	-		HGI48_RS10985	0.58	+0.5
2,383,138	-		HGI48_RS10985	0.68	+0.1
2,383,138	-		HGI48_RS10985	0.68	-2.5
2,383,138	-		HGI48_RS10985	0.68	-0.2
2,383,154	+		HGI48_RS10985	0.70	+0.2
2,383,154	+		HGI48_RS10985	0.70	-0.5
2,383,285	+				+0.8
2,383,285	+				+0.3
2,383,286	-				-0.4
2,383,286	-				-0.1
2,383,286	-				+0.7
2,383,286	-				-0.4
2,383,286	-				-3.1
2,383,286	-				-0.9
2,383,296	+				-1.5
2,383,422	+				-0.2
2,383,424	+				-1.1
2,383,425	-				+1.1
2,383,425	-				-0.5
2,383,425	-				-0.7
2,383,425	-				-0.5
2,383,687	+		HGI48_RS10990	0.41	-0.2
2,383,689	+		HGI48_RS10990	0.41	+1.2
2,383,966	-		HGI48_RS10990	0.76	-0.3
2,383,979	-		HGI48_RS10990	0.78	-2.3
2,384,009	+				-0.5
2,384,010	-		HGI48_RS10990	0.82	-1.8
2,384,030	+		HGI48_RS10990	0.84	+1.3
2,384,030	+		HGI48_RS10990	0.84	-0.5
2,384,030	+				-0.5
2,384,031	-		HGI48_RS10990	0.84	-0.5
2,384,031	-				-0.9
2,384,031	-		HGI48_RS10990	0.84	-1.9
2,384,438	+		HGI48_RS10995	0.28	-0.3
2,384,438	+				-0.5
2,384,439	-		HGI48_RS10995	0.28	-0.3
2,384,613	+		HGI48_RS10995	0.45	+0.4
2,384,613	+		HGI48_RS10995	0.45	-2.6
2,384,613	+		HGI48_RS10995	0.45	-0.9
2,384,613	+		HGI48_RS10995	0.45	+0.1
2,385,142	+				+1.3