Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10300

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,220,811	-		HGI48_RS10295	0.21	-0.0
2,220,815	-		HGI48_RS10295	0.22	-0.2
2,220,890	+		HGI48_RS10295	0.29	+0.9
2,220,890	+		HGI48_RS10295	0.29	+0.3
2,220,973	+				+0.1
2,220,974	-		HGI48_RS10295	0.37	-1.8
2,221,090	-		HGI48_RS10295	0.49	-0.9
2,221,205	+		HGI48_RS10295	0.60	-0.2
2,221,205	+		HGI48_RS10295	0.60	+0.3
2,221,206	-		HGI48_RS10295	0.60	+0.5
2,221,370	+				+1.9
2,221,370	+		HGI48_RS10295	0.76	+0.9
2,221,380	-		HGI48_RS10295	0.77	+0.3
2,221,450	+				-0.5
2,221,451	-		HGI48_RS10295	0.84	-0.2
2,221,451	-		HGI48_RS10295	0.84	-0.1
2,221,454	+		HGI48_RS10295	0.84	-0.1
2,221,454	+		HGI48_RS10295	0.84	-0.5
2,221,454	+				+2.4
2,221,455	-		HGI48_RS10295	0.84	-0.9
2,221,455	-		HGI48_RS10295	0.84	-1.3
2,221,455	-		HGI48_RS10295	0.84	-0.6
2,221,455	-		HGI48_RS10295	0.84	-1.1
2,221,455	-				+2.4
2,221,455	-		HGI48_RS10295	0.84	-1.6
2,221,544	+				+0.1
2,221,545	-				-0.6
2,221,586	+				+2.4
2,221,586	+				-0.3
2,221,586	+				+0.1
2,221,595	+				+0.9
2,221,596	-				+1.5
2,221,618	+				+0.6
2,221,618	+				-0.2
2,221,676	-				-0.3
2,221,677	+				+0.4
2,221,936	-		HGI48_RS10300	0.11	-0.2
2,221,950	+		HGI48_RS10300	0.12	+0.7
2,221,951	-		HGI48_RS10300	0.12	-0.7
2,222,119	+		HGI48_RS10300	0.21	-1.1
2,222,120	-		HGI48_RS10300	0.21	-1.7
2,222,230	+		HGI48_RS10300	0.27	+1.1
2,222,231	-		HGI48_RS10300	0.27	-1.5
2,222,234	+				-1.5
2,222,234	+		HGI48_RS10300	0.27	+0.4
2,222,234	+		HGI48_RS10300	0.27	+0.4
2,222,234	+		HGI48_RS10300	0.27	-0.1
2,222,235	-		HGI48_RS10300	0.27	-2.5
2,222,235	-		HGI48_RS10300	0.27	+1.0
2,222,235	-		HGI48_RS10300	0.27	-0.6
2,222,235	-		HGI48_RS10300	0.27	-0.1
2,222,235	-		HGI48_RS10300	0.27	+0.7
2,222,235	-		HGI48_RS10300	0.27	-0.3
2,222,242	+		HGI48_RS10300	0.28	-0.6
2,222,378	-		HGI48_RS10300	0.35	-1.1
2,222,378	-		HGI48_RS10300	0.35	-0.7
2,222,384	+		HGI48_RS10300	0.35	-0.6
2,222,385	-		HGI48_RS10300	0.35	-0.9
2,222,547	+		HGI48_RS10300	0.44	+0.4
2,222,548	-		HGI48_RS10300	0.44	+0.1
2,222,548	-		HGI48_RS10300	0.44	+0.2
2,222,643	+		HGI48_RS10300	0.49	-0.9
2,222,643	+		HGI48_RS10300	0.49	+0.1
2,222,643	+		HGI48_RS10300	0.49	-0.6
2,222,644	-		HGI48_RS10300	0.49	+0.3
2,222,868	+		HGI48_RS10300	0.62	-1.6
2,222,868	+		HGI48_RS10300	0.62	-1.3
2,222,869	-		HGI48_RS10300	0.62	-0.9
2,222,961	+		HGI48_RS10300	0.67	+0.4
2,223,018	+		HGI48_RS10300	0.70	-0.7
2,223,019	-		HGI48_RS10300	0.70	-0.0
2,223,019	-		HGI48_RS10300	0.70	-0.9
2,223,019	-		HGI48_RS10300	0.70	+0.7
2,223,019	-		HGI48_RS10300	0.70	-0.2
2,223,022	-		HGI48_RS10300	0.70	-0.4
2,223,076	-		HGI48_RS10300	0.73	-1.5
2,223,102	+		HGI48_RS10300	0.74	-1.5
2,223,102	+		HGI48_RS10300	0.74	-0.0
2,223,102	+		HGI48_RS10300	0.74	-1.9
2,223,102	+		HGI48_RS10300	0.74	-0.6
2,223,103	-		HGI48_RS10300	0.74	-0.2
2,223,103	-		HGI48_RS10300	0.74	+0.1
2,223,103	-		HGI48_RS10300	0.74	-0.5
2,223,103	-		HGI48_RS10300	0.74	-0.1
2,223,103	-		HGI48_RS10300	0.74	+0.1
2,223,103	-		HGI48_RS10300	0.74	-1.5
2,223,105	+		HGI48_RS10300	0.74	-0.0
2,223,105	+		HGI48_RS10300	0.74	-0.3
2,223,105	+		HGI48_RS10300	0.74	+0.5
2,223,106	-		HGI48_RS10300	0.74	-2.2
2,223,106	-		HGI48_RS10300	0.74	+1.4
2,223,186	+		HGI48_RS10300	0.79	+0.7
2,223,186	+		HGI48_RS10300	0.79	-0.9
2,223,187	-		HGI48_RS10300	0.79	-1.0
2,223,187	-		HGI48_RS10300	0.79	+0.1
2,223,187	-		HGI48_RS10300	0.79	+0.9
2,223,187	-		HGI48_RS10300	0.79	+0.2
2,223,187	-		HGI48_RS10300	0.79	-1.3
2,223,286	+		HGI48_RS10300	0.84	-0.2
2,223,396	-				+1.6
2,223,444	-				+0.4
2,223,451	+				-0.6
2,223,453	+				-0.6
2,223,454	-				-0.3
2,223,454	-				-0.6
2,223,454	-				+0.4
2,223,546	-				+0.8
2,223,606	+				-0.0
2,223,695	-				+0.1
2,223,755	-				-1.2
2,223,774	-				+0.8
2,223,991	-		HGI48_RS10305	0.27	-2.2
2,224,143	+		HGI48_RS10305	0.54	+0.3
2,224,318	+		HGI48_RS10305	0.86	-0.0
2,224,318	+		HGI48_RS10305	0.86	-0.8
2,224,319	-		HGI48_RS10305	0.86	-0.1
2,224,338	+		HGI48_RS10305	0.89	+0.3
2,224,368	+				-0.3
2,224,388	-				+0.3
2,224,388	-				-0.3
2,224,388	-				+0.1
2,224,388	-				+0.4
2,224,394	-				+0.8
2,224,403	-				+0.1
2,224,567	-				-0.9