Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09740 and HGI48_RS09745 overlap by 4 nucleotides HGI48_RS09745 and HGI48_RS09750 are separated by 4 nucleotides
HGI48_RS09740: HGI48_RS09740 - histidinol-phosphate transaminase, at 2,102,831 to 2,103,901
_RS09740
HGI48_RS09745: HGI48_RS09745 - histidinol dehydrogenase, at 2,103,898 to 2,105,208
_RS09745
HGI48_RS09750: HGI48_RS09750 - ATP phosphoribosyltransferase, at 2,105,213 to 2,106,112
_RS09750
Position (kb)
2103
2104
2105
2106 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2103.280 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.351 kb on + strand, within HGI48_RS09740 at 2103.459 kb on + strand, within HGI48_RS09740 at 2103.460 kb on - strand, within HGI48_RS09740 at 2103.890 kb on - strand at 2104.070 kb on + strand at 2104.088 kb on + strand, within HGI48_RS09745 at 2104.089 kb on - strand, within HGI48_RS09745 at 2104.099 kb on + strand, within HGI48_RS09745 at 2104.100 kb on - strand, within HGI48_RS09745 at 2104.100 kb on - strand, within HGI48_RS09745 at 2104.565 kb on + strand at 2104.566 kb on - strand, within HGI48_RS09745 at 2104.814 kb on + strand, within HGI48_RS09745 at 2104.814 kb on + strand, within HGI48_RS09745 at 2104.823 kb on - strand, within HGI48_RS09745 at 2104.876 kb on + strand at 2105.249 kb on - strand at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.430 kb on + strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.431 kb on - strand, within HGI48_RS09750 at 2105.614 kb on + strand, within HGI48_RS09750 at 2105.614 kb on + strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.093 kb on - strand at 2106.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,103,280 + HGI48_RS09740 0.42 -0.2 2,103,351 + HGI48_RS09740 0.49 -1.6 2,103,351 + HGI48_RS09740 0.49 -0.6 2,103,459 + HGI48_RS09740 0.59 -2.4 2,103,460 - HGI48_RS09740 0.59 -0.7 2,103,890 - -2.4 2,104,070 + +0.1 2,104,088 + HGI48_RS09745 0.14 -3.2 2,104,089 - HGI48_RS09745 0.15 -0.9 2,104,099 + HGI48_RS09745 0.15 -1.4 2,104,100 - HGI48_RS09745 0.15 -2.2 2,104,100 - HGI48_RS09745 0.15 -0.5 2,104,565 + +1.1 2,104,566 - HGI48_RS09745 0.51 -0.2 2,104,814 + HGI48_RS09745 0.70 -0.0 2,104,814 + HGI48_RS09745 0.70 -1.4 2,104,823 - HGI48_RS09745 0.71 -0.6 2,104,876 + -0.4 2,105,249 - -0.9 2,105,430 + HGI48_RS09750 0.24 -0.2 2,105,430 + HGI48_RS09750 0.24 -0.4 2,105,430 + HGI48_RS09750 0.24 -2.4 2,105,430 + HGI48_RS09750 0.24 +0.6 2,105,431 - HGI48_RS09750 0.24 +1.3 2,105,431 - HGI48_RS09750 0.24 -0.9 2,105,431 - HGI48_RS09750 0.24 -1.4 2,105,614 + HGI48_RS09750 0.45 -0.4 2,105,614 + -1.4 2,106,093 - -1.4 2,106,093 - +0.6 2,106,093 - +0.3 2,106,093 - -1.3 2,106,127 - -0.2
Or see this region's nucleotide sequence