Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06515

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06510 and HGI48_RS06515 overlap by 1 nucleotidesHGI48_RS06515 and HGI48_RS06520 are separated by 700 nucleotides HGI48_RS06510: HGI48_RS06510 - ADP-forming succinate--CoA ligase subunit beta, at 1,382,157 to 1,383,323 _RS06510 HGI48_RS06515: HGI48_RS06515 - succinate--CoA ligase subunit alpha, at 1,383,323 to 1,384,195 _RS06515 HGI48_RS06520: HGI48_RS06520 - cytochrome ubiquinol oxidase subunit I, at 1,384,896 to 1,386,461 _RS06520 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1at 1382.406 kb on + strand, within HGI48_RS06510at 1382.471 kb on + strand, within HGI48_RS06510at 1382.471 kb on + strand, within HGI48_RS06510at 1382.910 kb on + strand, within HGI48_RS06510at 1382.910 kb on + strand, within HGI48_RS06510at 1382.911 kb on - strand, within HGI48_RS06510at 1383.224 kb on - strandat 1383.321 kb on + strandat 1383.321 kb on + strandat 1383.536 kb on + strand, within HGI48_RS06515at 1383.536 kb on + strand, within HGI48_RS06515at 1383.536 kb on + strand, within HGI48_RS06515at 1383.536 kb on + strand, within HGI48_RS06515at 1384.054 kb on + strand, within HGI48_RS06515at 1384.174 kb on - strandat 1384.193 kb on + strandat 1384.194 kb on - strandat 1384.194 kb on - strandat 1384.231 kb on + strandat 1384.232 kb on - strandat 1384.519 kb on - strandat 1384.519 kb on - strandat 1384.569 kb on + strandat 1384.589 kb on - strandat 1384.668 kb on + strandat 1384.687 kb on + strandat 1384.693 kb on + strandat 1384.695 kb on + strandat 1384.709 kb on + strandat 1384.714 kb on + strandat 1384.816 kb on + strandat 1384.821 kb on + strandat 1384.824 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,382,406 + HGI48_RS06510 0.21 +0.1
1,382,471 + HGI48_RS06510 0.27 -0.0
1,382,471 + HGI48_RS06510 0.27 -0.3
1,382,910 + HGI48_RS06510 0.65 -0.1
1,382,910 + HGI48_RS06510 0.65 +0.6
1,382,911 - HGI48_RS06510 0.65 -0.3
1,383,224 - -0.7
1,383,321 + -1.3
1,383,321 + -1.5
1,383,536 + HGI48_RS06515 0.24 -0.9
1,383,536 + HGI48_RS06515 0.24 +0.5
1,383,536 + HGI48_RS06515 0.24 -2.0
1,383,536 + HGI48_RS06515 0.24 +0.6
1,384,054 + HGI48_RS06515 0.84 -2.2
1,384,174 - -0.4
1,384,193 + -0.4
1,384,194 - +0.6
1,384,194 - -0.8
1,384,231 + +0.3
1,384,232 - -0.1
1,384,519 - +0.5
1,384,519 - +0.3
1,384,569 + +1.1
1,384,589 - -0.7
1,384,668 + +0.4
1,384,687 + -1.7
1,384,693 + -1.3
1,384,695 + +0.7
1,384,709 + -0.3
1,384,714 + +0.9
1,384,816 + +0.5
1,384,821 + +0.3
1,384,824 + -2.3

Or see this region's nucleotide sequence