Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06505 and HGI48_RS06510 are separated by 137 nucleotides HGI48_RS06510 and HGI48_RS06515 overlap by 1 nucleotides
HGI48_RS06505: HGI48_RS06505 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,380,793 to 1,382,019
_RS06505
HGI48_RS06510: HGI48_RS06510 - ADP-forming succinate--CoA ligase subunit beta, at 1,382,157 to 1,383,323
_RS06510
HGI48_RS06515: HGI48_RS06515 - succinate--CoA ligase subunit alpha, at 1,383,323 to 1,384,195
_RS06515
Position (kb)
1382
1383
1384 Strain fitness (log2 ratio)
-2
-1
0
1 at 1382.064 kb on + strand at 1382.064 kb on + strand at 1382.064 kb on + strand at 1382.065 kb on - strand at 1382.071 kb on + strand at 1382.071 kb on + strand at 1382.071 kb on + strand at 1382.071 kb on + strand at 1382.128 kb on + strand at 1382.140 kb on + strand at 1382.231 kb on + strand at 1382.232 kb on - strand at 1382.406 kb on + strand, within HGI48_RS06510 at 1382.471 kb on + strand, within HGI48_RS06510 at 1382.471 kb on + strand, within HGI48_RS06510 at 1382.910 kb on + strand, within HGI48_RS06510 at 1382.910 kb on + strand, within HGI48_RS06510 at 1382.911 kb on - strand, within HGI48_RS06510 at 1383.224 kb on - strand at 1383.321 kb on + strand at 1383.321 kb on + strand at 1383.536 kb on + strand, within HGI48_RS06515 at 1383.536 kb on + strand, within HGI48_RS06515 at 1383.536 kb on + strand, within HGI48_RS06515 at 1383.536 kb on + strand, within HGI48_RS06515 at 1384.054 kb on + strand, within HGI48_RS06515 at 1384.174 kb on - strand at 1384.193 kb on + strand at 1384.194 kb on - strand at 1384.194 kb on - strand at 1384.231 kb on + strand at 1384.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,382,064 + -0.3 1,382,064 + -0.1 1,382,064 + -0.1 1,382,065 - +0.0 1,382,071 + -2.4 1,382,071 + -0.9 1,382,071 + -1.3 1,382,071 + +0.8 1,382,128 + +0.2 1,382,140 + -1.4 1,382,231 + -1.5 1,382,232 - -0.3 1,382,406 + HGI48_RS06510 0.21 +0.1 1,382,471 + HGI48_RS06510 0.27 -0.0 1,382,471 + HGI48_RS06510 0.27 -0.3 1,382,910 + HGI48_RS06510 0.65 -0.1 1,382,910 + HGI48_RS06510 0.65 +0.6 1,382,911 - HGI48_RS06510 0.65 -0.3 1,383,224 - -0.7 1,383,321 + -1.3 1,383,321 + -1.5 1,383,536 + HGI48_RS06515 0.24 -0.9 1,383,536 + HGI48_RS06515 0.24 +0.5 1,383,536 + HGI48_RS06515 0.24 -2.0 1,383,536 + HGI48_RS06515 0.24 +0.6 1,384,054 + HGI48_RS06515 0.84 -2.2 1,384,174 - -0.4 1,384,193 + -0.4 1,384,194 - +0.6 1,384,194 - -0.8 1,384,231 + +0.3 1,384,232 - -0.1
Or see this region's nucleotide sequence