Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06095

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,298,386	-		HGI48_RS06085	0.20	-2.2
1,298,386	-				-0.7
1,298,391	+		HGI48_RS06085	0.20	-0.7
1,298,392	-		HGI48_RS06085	0.20	-1.6
1,298,502	+		HGI48_RS06085	0.36	+0.3
1,298,548	+				-0.7
1,298,686	+				+0.3
1,298,913	-				-0.2
1,298,913	-				-2.1
1,298,972	+				+0.7
1,299,120	+		HGI48_RS06090	0.44	+0.3
1,299,120	+		HGI48_RS06090	0.44	+0.3
1,299,120	+		HGI48_RS06090	0.44	+0.0
1,299,121	-				+0.3
1,299,217	+				+2.2
1,299,256	-		HGI48_RS06090	0.82	-0.7
1,299,298	+				-0.9
1,299,298	+				+0.5
1,299,298	+				+0.1
1,299,299	-				-2.7
1,299,299	-				-1.2
1,299,299	-				+1.0
1,299,299	-				-0.7
1,299,302	+				+0.3
1,299,302	+				-1.0
1,299,302	+				+0.6
1,299,303	-				-0.8
1,299,303	-				-0.2
1,299,314	+				-1.1
1,299,419	-				-0.1
1,299,524	+		HGI48_RS06095	0.13	+0.6
1,299,524	+		HGI48_RS06095	0.13	+0.3
1,299,525	-		HGI48_RS06095	0.13	-0.2
1,299,526	+		HGI48_RS06095	0.13	+0.6
1,299,527	-		HGI48_RS06095	0.13	-1.7
1,299,527	-		HGI48_RS06095	0.13	-0.1
1,299,527	-				+0.3
1,299,527	-		HGI48_RS06095	0.13	+0.2
1,299,555	-		HGI48_RS06095	0.15	-0.7
1,299,588	+		HGI48_RS06095	0.17	-1.7
1,299,594	+		HGI48_RS06095	0.18	-1.0
1,299,594	+		HGI48_RS06095	0.18	-0.2
1,299,595	-		HGI48_RS06095	0.18	-1.2
1,299,595	-		HGI48_RS06095	0.18	-0.7
1,299,595	-		HGI48_RS06095	0.18	-0.8
1,299,595	-		HGI48_RS06095	0.18	-0.1
1,299,595	-		HGI48_RS06095	0.18	-1.2
1,299,804	-		HGI48_RS06095	0.32	-0.7
1,299,826	-		HGI48_RS06095	0.34	-0.5
1,299,826	-		HGI48_RS06095	0.34	+0.6
1,299,840	+		HGI48_RS06095	0.34	+1.2
1,299,945	+				-1.2
1,299,946	-		HGI48_RS06095	0.42	-2.7
1,299,946	-		HGI48_RS06095	0.42	+0.3
1,299,946	-		HGI48_RS06095	0.42	-1.8
1,299,949	+		HGI48_RS06095	0.42	-0.6
1,299,949	+		HGI48_RS06095	0.42	-2.0
1,299,950	-				+1.6
1,299,950	-		HGI48_RS06095	0.42	+0.9
1,300,427	+		HGI48_RS06095	0.75	-1.1
1,300,427	+		HGI48_RS06095	0.75	+1.5
1,300,427	+		HGI48_RS06095	0.75	+0.3
1,300,428	-		HGI48_RS06095	0.75	-1.5
1,300,431	+		HGI48_RS06095	0.75	+1.0
1,300,498	+		HGI48_RS06095	0.79	+0.1
1,300,499	-		HGI48_RS06095	0.80	-0.7
1,300,525	+		HGI48_RS06095	0.81	-0.4
1,300,526	-				+1.9
1,300,529	+		HGI48_RS06095	0.82	+0.1
1,300,530	-		HGI48_RS06095	0.82	-2.0
1,300,575	+		HGI48_RS06095	0.85	+0.3
1,300,575	+		HGI48_RS06095	0.85	-0.1
1,300,576	-		HGI48_RS06095	0.85	+0.8
1,300,576	-		HGI48_RS06095	0.85	-2.5
1,300,620	-		HGI48_RS06095	0.88	-0.2
1,300,632	+		HGI48_RS06095	0.89	+0.3
1,300,748	+				-2.1
1,300,955	+				+0.8
1,301,048	+		HGI48_RS06100	0.16	+0.3
1,301,051	+		HGI48_RS06100	0.16	+0.3
1,301,051	+				+1.1
1,301,052	-		HGI48_RS06100	0.17	-0.9
1,301,052	-		HGI48_RS06100	0.17	-0.2
1,301,052	-		HGI48_RS06100	0.17	-0.2
1,301,052	-		HGI48_RS06100	0.17	+1.2
1,301,052	-		HGI48_RS06100	0.17	+0.3
1,301,052	-		HGI48_RS06100	0.17	+0.2
1,301,087	+		HGI48_RS06100	0.24	+0.3
1,301,095	+		HGI48_RS06100	0.26	-1.7
1,301,096	-		HGI48_RS06100	0.26	-2.0
1,301,096	-		HGI48_RS06100	0.26	+0.3
1,301,096	-		HGI48_RS06100	0.26	+0.7
1,301,180	+		HGI48_RS06100	0.44	-1.2
1,301,330	-		HGI48_RS06100	0.76	+0.5
1,301,335	+		HGI48_RS06100	0.77	+0.3
1,301,335	+		HGI48_RS06100	0.77	-0.2
1,301,335	+		HGI48_RS06100	0.77	-0.7
1,301,336	-		HGI48_RS06100	0.77	+0.0
1,301,336	-				-0.2
1,301,336	-				+1.3
1,301,336	-		HGI48_RS06100	0.77	-2.2
1,301,372	+				+1.6
1,301,373	-		HGI48_RS06100	0.85	-0.0
1,301,446	-				-1.2
1,301,446	-				-0.0
1,301,489	-				+0.3
1,301,491	+				-0.5
1,301,491	+				+0.7
1,301,491	+				+0.0
1,301,491	+				+0.6
1,301,492	-				-0.7
1,301,515	+		HGI48_RS06105	0.12	+0.1
1,301,515	+		HGI48_RS06105	0.12	-0.7
1,301,515	+		HGI48_RS06105	0.12	-0.9
1,301,515	+				+0.3
1,301,515	+		HGI48_RS06105	0.12	+0.3
1,301,515	+		HGI48_RS06105	0.12	-0.5
1,301,516	-				-0.2
1,301,516	-		HGI48_RS06105	0.13	-0.7
1,301,516	-		HGI48_RS06105	0.13	-0.2
1,301,519	+		HGI48_RS06105	0.13	-0.7
1,301,519	+		HGI48_RS06105	0.13	-0.2
1,301,519	+		HGI48_RS06105	0.13	+0.8
1,301,519	+		HGI48_RS06105	0.13	+0.3
1,301,519	+		HGI48_RS06105	0.13	+1.2
1,301,519	+		HGI48_RS06105	0.13	-1.3
1,301,519	+		HGI48_RS06105	0.13	-0.1
1,301,519	+		HGI48_RS06105	0.13	+0.0
1,301,519	+		HGI48_RS06105	0.13	-1.0
1,301,520	-		HGI48_RS06105	0.13	-0.1
1,301,520	-		HGI48_RS06105	0.13	-0.1
1,301,520	-		HGI48_RS06105	0.13	-0.4
1,301,542	+		HGI48_RS06105	0.17	+0.8
1,301,542	+		HGI48_RS06105	0.17	+1.6
1,301,542	+		HGI48_RS06105	0.17	-0.5
1,301,578	+				-1.2
1,301,589	+		HGI48_RS06105	0.25	+1.2
1,301,589	+				+1.1
1,301,590	-		HGI48_RS06105	0.26	-0.5
1,301,590	-		HGI48_RS06105	0.26	+0.1
1,301,648	-		HGI48_RS06105	0.36	-0.5
1,301,678	-		HGI48_RS06105	0.41	-0.6
1,301,727	-				+0.8