Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05695 and HGI48_RS05700 are separated by 194 nucleotides HGI48_RS05700 and HGI48_RS05705 are separated by 255 nucleotides
HGI48_RS05695: HGI48_RS05695 - endopeptidase La, at 1,200,275 to 1,202,638
_RS05695
HGI48_RS05700: HGI48_RS05700 - DNA-binding protein HU-beta, at 1,202,833 to 1,203,105
_RS05700
HGI48_RS05705: HGI48_RS05705 - peptidylprolyl isomerase, at 1,203,361 to 1,205,241
_RS05705
Position (kb) 1202
1203
1204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1201.874 kb on + strand at 1201.877 kb on + strand, within HGI48_RS05695 at 1201.878 kb on - strand, within HGI48_RS05695 at 1201.878 kb on - strand, within HGI48_RS05695 at 1201.878 kb on - strand, within HGI48_RS05695 at 1201.934 kb on - strand, within HGI48_RS05695 at 1201.975 kb on + strand at 1201.976 kb on - strand, within HGI48_RS05695 at 1201.976 kb on - strand, within HGI48_RS05695 at 1202.007 kb on - strand, within HGI48_RS05695 at 1202.007 kb on - strand, within HGI48_RS05695 at 1202.007 kb on - strand, within HGI48_RS05695 at 1202.007 kb on - strand, within HGI48_RS05695 at 1202.007 kb on - strand at 1202.010 kb on + strand, within HGI48_RS05695 at 1202.011 kb on - strand, within HGI48_RS05695 at 1202.011 kb on - strand at 1202.150 kb on + strand, within HGI48_RS05695 at 1202.150 kb on + strand, within HGI48_RS05695 at 1202.151 kb on - strand, within HGI48_RS05695 at 1202.151 kb on - strand, within HGI48_RS05695 at 1202.151 kb on - strand, within HGI48_RS05695 at 1202.526 kb on + strand at 1202.527 kb on - strand at 1202.527 kb on - strand at 1202.575 kb on + strand at 1202.575 kb on + strand at 1202.575 kb on + strand at 1202.576 kb on - strand at 1202.576 kb on - strand at 1202.578 kb on + strand at 1202.579 kb on - strand at 1202.636 kb on + strand at 1202.716 kb on - strand at 1202.721 kb on - strand at 1202.752 kb on + strand at 1202.771 kb on + strand at 1202.777 kb on + strand at 1202.777 kb on + strand at 1202.778 kb on - strand at 1202.778 kb on - strand at 1202.778 kb on - strand at 1202.803 kb on + strand at 1202.807 kb on - strand at 1202.812 kb on + strand at 1202.813 kb on - strand at 1202.877 kb on + strand, within HGI48_RS05700 at 1202.878 kb on - strand, within HGI48_RS05700 at 1202.917 kb on - strand, within HGI48_RS05700 at 1203.015 kb on + strand, within HGI48_RS05700 at 1203.110 kb on + strand at 1203.110 kb on + strand at 1203.111 kb on - strand at 1203.111 kb on - strand at 1203.155 kb on + strand at 1203.155 kb on + strand at 1203.156 kb on - strand at 1203.156 kb on - strand at 1203.156 kb on - strand at 1203.180 kb on + strand at 1203.181 kb on + strand at 1203.181 kb on + strand at 1203.186 kb on + strand at 1203.186 kb on + strand at 1203.186 kb on + strand at 1203.186 kb on + strand at 1203.187 kb on - strand at 1203.188 kb on + strand at 1203.188 kb on + strand at 1203.188 kb on + strand at 1203.189 kb on - strand at 1203.189 kb on - strand at 1203.189 kb on - strand at 1203.189 kb on - strand at 1203.189 kb on - strand at 1203.204 kb on - strand at 1203.237 kb on + strand at 1203.237 kb on + strand at 1203.238 kb on - strand at 1203.238 kb on - strand at 1203.244 kb on - strand at 1203.254 kb on + strand at 1203.254 kb on + strand at 1203.284 kb on + strand at 1203.284 kb on + strand at 1203.285 kb on - strand at 1203.285 kb on - strand at 1203.285 kb on - strand at 1203.285 kb on - strand at 1203.339 kb on + strand at 1203.340 kb on - strand at 1203.360 kb on + strand at 1203.360 kb on + strand at 1203.361 kb on - strand at 1203.361 kb on - strand at 1203.361 kb on - strand at 1203.361 kb on - strand at 1203.374 kb on + strand at 1203.408 kb on + strand at 1203.409 kb on - strand at 1203.464 kb on + strand at 1203.465 kb on - strand at 1203.537 kb on - strand at 1203.607 kb on + strand, within HGI48_RS05705 at 1203.607 kb on + strand, within HGI48_RS05705 at 1203.607 kb on + strand, within HGI48_RS05705 at 1203.608 kb on - strand, within HGI48_RS05705 at 1203.608 kb on - strand, within HGI48_RS05705 at 1203.608 kb on - strand, within HGI48_RS05705 at 1203.608 kb on - strand, within HGI48_RS05705 at 1203.608 kb on - strand at 1203.609 kb on + strand, within HGI48_RS05705 at 1203.609 kb on + strand, within HGI48_RS05705 at 1203.609 kb on + strand, within HGI48_RS05705 at 1203.609 kb on + strand, within HGI48_RS05705 at 1203.610 kb on - strand at 1203.610 kb on - strand, within HGI48_RS05705 at 1203.610 kb on - strand at 1203.610 kb on - strand, within HGI48_RS05705 at 1203.610 kb on - strand, within HGI48_RS05705 at 1203.610 kb on - strand, within HGI48_RS05705 at 1203.610 kb on - strand at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.665 kb on + strand, within HGI48_RS05705 at 1203.666 kb on - strand, within HGI48_RS05705 at 1203.666 kb on - strand, within HGI48_RS05705 at 1203.666 kb on - strand, within HGI48_RS05705 at 1203.666 kb on - strand, within HGI48_RS05705 at 1203.671 kb on - strand, within HGI48_RS05705 at 1203.671 kb on - strand, within HGI48_RS05705 at 1203.712 kb on - strand, within HGI48_RS05705 at 1203.732 kb on - strand, within HGI48_RS05705 at 1203.768 kb on + strand, within HGI48_RS05705 at 1203.769 kb on - strand, within HGI48_RS05705 at 1203.769 kb on - strand, within HGI48_RS05705 at 1203.769 kb on - strand, within HGI48_RS05705 at 1203.769 kb on - strand, within HGI48_RS05705 at 1203.769 kb on - strand, within HGI48_RS05705 at 1203.884 kb on + strand, within HGI48_RS05705 at 1203.884 kb on + strand, within HGI48_RS05705 at 1203.884 kb on + strand, within HGI48_RS05705 at 1203.884 kb on + strand at 1203.951 kb on + strand, within HGI48_RS05705 at 1203.952 kb on - strand, within HGI48_RS05705 at 1204.012 kb on + strand, within HGI48_RS05705 at 1204.063 kb on + strand, within HGI48_RS05705 at 1204.063 kb on + strand, within HGI48_RS05705 at 1204.063 kb on + strand, within HGI48_RS05705 at 1204.063 kb on + strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.064 kb on - strand, within HGI48_RS05705 at 1204.065 kb on + strand, within HGI48_RS05705 at 1204.066 kb on - strand, within HGI48_RS05705 at 1204.066 kb on - strand, within HGI48_RS05705 at 1204.096 kb on - strand, within HGI48_RS05705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,201,874 + -1.2 1,201,877 + HGI48_RS05695 0.68 -0.8 1,201,878 - HGI48_RS05695 0.68 +0.6 1,201,878 - HGI48_RS05695 0.68 +0.4 1,201,878 - HGI48_RS05695 0.68 +1.0 1,201,934 - HGI48_RS05695 0.70 -1.5 1,201,975 + -0.6 1,201,976 - HGI48_RS05695 0.72 -1.6 1,201,976 - HGI48_RS05695 0.72 -1.8 1,202,007 - HGI48_RS05695 0.73 -1.6 1,202,007 - HGI48_RS05695 0.73 -1.2 1,202,007 - HGI48_RS05695 0.73 -0.8 1,202,007 - HGI48_RS05695 0.73 -0.9 1,202,007 - +0.4 1,202,010 + HGI48_RS05695 0.73 -0.8 1,202,011 - HGI48_RS05695 0.73 -1.0 1,202,011 - +0.4 1,202,150 + HGI48_RS05695 0.79 -1.9 1,202,150 + HGI48_RS05695 0.79 +0.1 1,202,151 - HGI48_RS05695 0.79 +0.2 1,202,151 - HGI48_RS05695 0.79 +0.8 1,202,151 - HGI48_RS05695 0.79 -2.4 1,202,526 + +0.4 1,202,527 - -0.6 1,202,527 - -1.2 1,202,575 + -2.2 1,202,575 + -1.0 1,202,575 + -2.6 1,202,576 - -0.8 1,202,576 - -1.0 1,202,578 + +0.6 1,202,579 - +1.1 1,202,636 + -0.5 1,202,716 - +0.2 1,202,721 - -0.3 1,202,752 + +0.7 1,202,771 + +0.7 1,202,777 + -0.1 1,202,777 + +0.3 1,202,778 - -0.2 1,202,778 - +1.1 1,202,778 - +1.1 1,202,803 + -1.2 1,202,807 - +0.7 1,202,812 + +0.8 1,202,813 - -0.5 1,202,877 + HGI48_RS05700 0.16 -0.4 1,202,878 - HGI48_RS05700 0.16 -1.2 1,202,917 - HGI48_RS05700 0.31 +0.4 1,203,015 + HGI48_RS05700 0.67 -1.4 1,203,110 + +0.7 1,203,110 + +0.4 1,203,111 - -1.1 1,203,111 - -0.6 1,203,155 + -1.8 1,203,155 + +1.1 1,203,156 - -0.1 1,203,156 - -0.5 1,203,156 - -2.4 1,203,180 + +2.1 1,203,181 + +0.4 1,203,181 + +0.0 1,203,186 + +1.0 1,203,186 + +1.2 1,203,186 + -0.6 1,203,186 + -0.9 1,203,187 - -1.0 1,203,188 + +0.3 1,203,188 + +0.8 1,203,188 + +0.8 1,203,189 - +0.4 1,203,189 - +2.0 1,203,189 - +0.1 1,203,189 - -0.3 1,203,189 - -0.6 1,203,204 - -0.8 1,203,237 + +0.2 1,203,237 + -0.4 1,203,238 - -0.5 1,203,238 - -0.3 1,203,244 - -0.4 1,203,254 + -0.1 1,203,254 + +0.1 1,203,284 + +0.9 1,203,284 + +1.7 1,203,285 - -3.1 1,203,285 - +0.0 1,203,285 - -1.4 1,203,285 - -0.6 1,203,339 + -0.0 1,203,340 - -1.4 1,203,360 + +0.8 1,203,360 + -0.3 1,203,361 - -1.4 1,203,361 - -0.7 1,203,361 - +0.4 1,203,361 - +0.4 1,203,374 + -0.3 1,203,408 + +1.1 1,203,409 - -0.9 1,203,464 + +0.1 1,203,465 - +0.4 1,203,537 - -1.1 1,203,607 + HGI48_RS05705 0.13 -1.2 1,203,607 + HGI48_RS05705 0.13 +0.4 1,203,607 + HGI48_RS05705 0.13 +0.9 1,203,608 - HGI48_RS05705 0.13 -2.9 1,203,608 - HGI48_RS05705 0.13 +0.4 1,203,608 - HGI48_RS05705 0.13 +1.4 1,203,608 - HGI48_RS05705 0.13 -1.4 1,203,608 - -0.2 1,203,609 + HGI48_RS05705 0.13 +0.8 1,203,609 + HGI48_RS05705 0.13 -0.2 1,203,609 + HGI48_RS05705 0.13 +0.3 1,203,609 + HGI48_RS05705 0.13 +0.4 1,203,610 - +1.1 1,203,610 - HGI48_RS05705 0.13 -1.1 1,203,610 - +1.1 1,203,610 - HGI48_RS05705 0.13 +0.7 1,203,610 - HGI48_RS05705 0.13 +0.2 1,203,610 - HGI48_RS05705 0.13 -0.4 1,203,610 - -0.2 1,203,665 + HGI48_RS05705 0.16 -0.2 1,203,665 + HGI48_RS05705 0.16 -0.0 1,203,665 + HGI48_RS05705 0.16 +1.2 1,203,665 + HGI48_RS05705 0.16 +0.9 1,203,665 + HGI48_RS05705 0.16 -0.9 1,203,665 + HGI48_RS05705 0.16 +0.1 1,203,666 - HGI48_RS05705 0.16 +0.7 1,203,666 - HGI48_RS05705 0.16 -0.2 1,203,666 - HGI48_RS05705 0.16 -1.6 1,203,666 - HGI48_RS05705 0.16 +0.1 1,203,671 - HGI48_RS05705 0.16 +0.6 1,203,671 - HGI48_RS05705 0.16 +0.7 1,203,712 - HGI48_RS05705 0.19 -1.0 1,203,732 - HGI48_RS05705 0.20 -0.6 1,203,768 + HGI48_RS05705 0.22 +0.9 1,203,769 - HGI48_RS05705 0.22 -0.6 1,203,769 - HGI48_RS05705 0.22 +0.2 1,203,769 - HGI48_RS05705 0.22 +0.7 1,203,769 - HGI48_RS05705 0.22 -0.1 1,203,769 - HGI48_RS05705 0.22 -0.6 1,203,884 + HGI48_RS05705 0.28 +0.5 1,203,884 + HGI48_RS05705 0.28 -0.2 1,203,884 + HGI48_RS05705 0.28 -0.0 1,203,884 + +1.4 1,203,951 + HGI48_RS05705 0.31 -0.7 1,203,952 - HGI48_RS05705 0.31 +1.0 1,204,012 + HGI48_RS05705 0.35 -0.4 1,204,063 + HGI48_RS05705 0.37 -1.4 1,204,063 + HGI48_RS05705 0.37 +0.2 1,204,063 + HGI48_RS05705 0.37 -0.4 1,204,063 + HGI48_RS05705 0.37 -1.2 1,204,064 - HGI48_RS05705 0.37 -0.4 1,204,064 - HGI48_RS05705 0.37 -0.6 1,204,064 - HGI48_RS05705 0.37 -1.4 1,204,064 - HGI48_RS05705 0.37 -1.6 1,204,064 - HGI48_RS05705 0.37 +0.1 1,204,064 - HGI48_RS05705 0.37 -2.2 1,204,065 + HGI48_RS05705 0.37 +0.1 1,204,066 - HGI48_RS05705 0.37 +0.0 1,204,066 - HGI48_RS05705 0.37 -0.5 1,204,096 - HGI48_RS05705 0.39 +1.1
Or see this region's nucleotide sequence