Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05250 and HGI48_RS05255 are separated by 30 nucleotides HGI48_RS05255 and HGI48_RS05260 are separated by 66 nucleotides HGI48_RS05260 and HGI48_RS05265 are separated by 104 nucleotides HGI48_RS05265 and HGI48_RS05270 overlap by 1 nucleotides
HGI48_RS05250: HGI48_RS05250 - IS3 family transposase, at 1,102,662 to 1,103,812
_RS05250
HGI48_RS05255: HGI48_RS05255 - IS3 family transposase, at 1,103,843 to 1,103,974
_RS05255
HGI48_RS05260: HGI48_RS05260 - transposase, at 1,104,041 to 1,104,271
_RS05260
HGI48_RS05265: HGI48_RS05265 - ATP-binding protein, at 1,104,376 to 1,106,091
_RS05265
HGI48_RS05270: HGI48_RS05270 - hypothetical protein, at 1,106,091 to 1,107,275
_RS05270
Position (kb) 1104
1105
1106
1107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1103.719 kb on + strand at 1103.827 kb on + strand at 1103.827 kb on + strand at 1103.939 kb on - strand at 1103.999 kb on + strand at 1104.059 kb on + strand at 1104.059 kb on + strand at 1104.060 kb on - strand at 1104.060 kb on - strand at 1104.060 kb on - strand at 1104.149 kb on - strand, within HGI48_RS05260 at 1104.149 kb on - strand at 1104.294 kb on + strand at 1104.491 kb on - strand at 1104.501 kb on + strand at 1104.772 kb on - strand, within HGI48_RS05265 at 1104.819 kb on - strand, within HGI48_RS05265 at 1105.032 kb on + strand, within HGI48_RS05265 at 1105.148 kb on - strand at 1105.150 kb on - strand, within HGI48_RS05265 at 1105.158 kb on + strand at 1105.365 kb on + strand, within HGI48_RS05265 at 1105.473 kb on + strand, within HGI48_RS05265 at 1105.474 kb on - strand, within HGI48_RS05265 at 1105.623 kb on + strand, within HGI48_RS05265 at 1105.643 kb on - strand, within HGI48_RS05265 at 1105.644 kb on - strand, within HGI48_RS05265 at 1105.693 kb on + strand, within HGI48_RS05265 at 1105.693 kb on + strand, within HGI48_RS05265 at 1105.744 kb on + strand, within HGI48_RS05265 at 1105.745 kb on - strand, within HGI48_RS05265 at 1105.745 kb on - strand, within HGI48_RS05265 at 1105.750 kb on - strand, within HGI48_RS05265 at 1105.858 kb on + strand, within HGI48_RS05265 at 1105.880 kb on + strand at 1106.004 kb on + strand at 1106.060 kb on - strand at 1106.092 kb on + strand at 1106.093 kb on - strand at 1106.131 kb on - strand at 1106.136 kb on + strand at 1106.205 kb on - strand at 1106.239 kb on - strand, within HGI48_RS05270 at 1106.304 kb on - strand at 1106.441 kb on + strand, within HGI48_RS05270 at 1106.473 kb on + strand, within HGI48_RS05270 at 1106.476 kb on - strand, within HGI48_RS05270 at 1106.478 kb on - strand, within HGI48_RS05270 at 1106.793 kb on + strand at 1106.866 kb on - strand, within HGI48_RS05270 at 1106.892 kb on + strand, within HGI48_RS05270 at 1106.893 kb on - strand, within HGI48_RS05270 at 1106.894 kb on + strand, within HGI48_RS05270 at 1106.994 kb on - strand, within HGI48_RS05270 at 1106.994 kb on - strand, within HGI48_RS05270
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,103,719 + +0.4 1,103,827 + -0.2 1,103,827 + -0.3 1,103,939 - +1.6 1,103,999 + -0.0 1,104,059 + +1.9 1,104,059 + -0.6 1,104,060 - -2.2 1,104,060 - +0.7 1,104,060 - -0.8 1,104,149 - HGI48_RS05260 0.47 +0.5 1,104,149 - +0.4 1,104,294 + -0.9 1,104,491 - -1.4 1,104,501 + +1.4 1,104,772 - HGI48_RS05265 0.23 +0.9 1,104,819 - HGI48_RS05265 0.26 +0.8 1,105,032 + HGI48_RS05265 0.38 +0.7 1,105,148 - -0.6 1,105,150 - HGI48_RS05265 0.45 -1.4 1,105,158 + +0.4 1,105,365 + HGI48_RS05265 0.58 +0.4 1,105,473 + HGI48_RS05265 0.64 -0.6 1,105,474 - HGI48_RS05265 0.64 -0.6 1,105,623 + HGI48_RS05265 0.73 +0.9 1,105,643 - HGI48_RS05265 0.74 -1.0 1,105,644 - HGI48_RS05265 0.74 -0.0 1,105,693 + HGI48_RS05265 0.77 +0.4 1,105,693 + HGI48_RS05265 0.77 -0.1 1,105,744 + HGI48_RS05265 0.80 +0.0 1,105,745 - HGI48_RS05265 0.80 +2.1 1,105,745 - HGI48_RS05265 0.80 -1.6 1,105,750 - HGI48_RS05265 0.80 -1.2 1,105,858 + HGI48_RS05265 0.86 +0.0 1,105,880 + +0.4 1,106,004 + -0.2 1,106,060 - -1.0 1,106,092 + -1.2 1,106,093 - -0.1 1,106,131 - +0.8 1,106,136 + +0.1 1,106,205 - +0.1 1,106,239 - HGI48_RS05270 0.12 +0.2 1,106,304 - -0.2 1,106,441 + HGI48_RS05270 0.30 -0.3 1,106,473 + HGI48_RS05270 0.32 +0.7 1,106,476 - HGI48_RS05270 0.32 +0.1 1,106,478 - HGI48_RS05270 0.33 +1.0 1,106,793 + -0.2 1,106,866 - HGI48_RS05270 0.65 +0.2 1,106,892 + HGI48_RS05270 0.68 -0.0 1,106,893 - HGI48_RS05270 0.68 -0.4 1,106,894 + HGI48_RS05270 0.68 +0.0 1,106,994 - HGI48_RS05270 0.76 +0.4 1,106,994 - HGI48_RS05270 0.76 +0.1
Or see this region's nucleotide sequence