Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05055

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,059,137	+				+1.0
1,059,138	-		HGI48_RS05050	0.22	+0.7
1,059,188	-		HGI48_RS05050	0.28	-0.6
1,059,423	-				+0.4
1,059,493	-		HGI48_RS05050	0.60	+0.7
1,059,499	+		HGI48_RS05050	0.61	+0.7
1,059,499	+		HGI48_RS05050	0.61	-0.8
1,059,499	+		HGI48_RS05050	0.61	+1.0
1,059,499	+		HGI48_RS05050	0.61	+0.1
1,059,499	+				-0.2
1,059,499	+		HGI48_RS05050	0.61	+0.3
1,059,499	+				-0.6
1,059,499	+		HGI48_RS05050	0.61	-0.3
1,059,499	+		HGI48_RS05050	0.61	-1.4
1,059,499	+		HGI48_RS05050	0.61	-0.8
1,059,539	+		HGI48_RS05050	0.65	-1.9
1,059,540	-		HGI48_RS05050	0.65	-0.2
1,059,568	+		HGI48_RS05050	0.69	+0.5
1,059,569	-		HGI48_RS05050	0.69	-1.4
1,059,774	+				-2.0
1,059,774	+				-1.9
1,059,874	+				-1.2
1,059,941	+				+0.8
1,059,942	-				+1.6
1,059,990	+				-0.4
1,059,990	+				-1.1
1,059,990	+				-0.5
1,059,990	+				-2.2
1,059,990	+				-1.6
1,059,990	+				-0.3
1,059,990	+				+0.1
1,059,990	+				+0.8
1,059,990	+				+0.3
1,059,990	+				+0.1
1,059,990	+				-0.6
1,059,990	+				-1.2
1,059,991	-				+1.8
1,059,991	-				+0.2
1,059,991	-				-0.8
1,059,991	-				-1.6
1,059,991	-				-2.4
1,059,991	-				+0.2
1,059,991	-				-0.9
1,059,999	+				-1.0
1,059,999	+				-1.3
1,060,056	+		HGI48_RS05055	0.12	+0.2
1,060,056	+				+1.4
1,060,056	+		HGI48_RS05055	0.12	-0.5
1,060,056	+		HGI48_RS05055	0.12	-0.6
1,060,056	+		HGI48_RS05055	0.12	+0.2
1,060,057	-		HGI48_RS05055	0.12	-0.5
1,060,057	-		HGI48_RS05055	0.12	+0.2
1,060,057	-		HGI48_RS05055	0.12	-0.2
1,060,057	-		HGI48_RS05055	0.12	+0.2
1,060,058	+				+1.7
1,060,058	+		HGI48_RS05055	0.12	-0.1
1,060,058	+		HGI48_RS05055	0.12	-0.4
1,060,058	+		HGI48_RS05055	0.12	+0.4
1,060,058	+				+1.4
1,060,059	-		HGI48_RS05055	0.13	-1.0
1,060,059	-		HGI48_RS05055	0.13	+0.6
1,060,059	-		HGI48_RS05055	0.13	+0.4
1,060,059	-		HGI48_RS05055	0.13	-1.9
1,060,059	-		HGI48_RS05055	0.13	-0.7
1,060,059	-		HGI48_RS05055	0.13	-1.6
1,060,059	-		HGI48_RS05055	0.13	+0.8
1,060,059	-		HGI48_RS05055	0.13	-0.7
1,060,059	-		HGI48_RS05055	0.13	-0.1
1,060,059	-				+1.4
1,060,097	-		HGI48_RS05055	0.22	+0.9
1,060,132	+		HGI48_RS05055	0.32	+0.1
1,060,146	-		HGI48_RS05055	0.35	-1.9
1,060,217	+		HGI48_RS05055	0.53	+0.0
1,060,218	-		HGI48_RS05055	0.54	+0.1
1,060,246	+		HGI48_RS05055	0.61	-1.9
1,060,271	+		HGI48_RS05055	0.67	+1.7
1,060,299	+		HGI48_RS05055	0.75	+0.4
1,060,299	+		HGI48_RS05055	0.75	+0.9
1,060,299	+		HGI48_RS05055	0.75	+0.8
1,060,300	-		HGI48_RS05055	0.75	-0.4
1,060,305	+		HGI48_RS05055	0.76	+0.0
1,060,305	+		HGI48_RS05055	0.76	+0.2
1,060,306	-		HGI48_RS05055	0.76	+1.1
1,060,306	-		HGI48_RS05055	0.76	+0.0
1,060,306	-		HGI48_RS05055	0.76	-0.1
1,060,360	-				-0.4
1,060,372	-				-1.6
1,060,372	-				-0.3
1,060,394	+				-1.4
1,060,394	+				+0.5
1,060,394	+				-0.4
1,060,394	+				-0.3
1,060,394	+				-0.3
1,060,403	+				+0.0
1,060,403	+				+0.4
1,060,403	+				-0.5
1,060,403	+				+0.4
1,060,457	+				+0.8
1,060,476	+				+2.7
1,060,476	+				-1.2
1,060,477	-				-0.5
1,060,477	-				+1.0
1,060,478	+				+0.4
1,060,479	-				-0.0
1,060,518	+		HGI48_RS05060	0.11	-0.9
1,060,536	+		HGI48_RS05060	0.13	-2.9
1,060,536	+		HGI48_RS05060	0.13	-0.3
1,060,537	-		HGI48_RS05060	0.13	-2.4
1,060,537	-		HGI48_RS05060	0.13	+0.1
1,060,854	-		HGI48_RS05060	0.41	+0.7
1,060,872	+				+0.4
1,060,873	-		HGI48_RS05060	0.43	-0.1
1,060,911	+		HGI48_RS05060	0.47	+0.1
1,060,911	+		HGI48_RS05060	0.47	-1.2
1,060,911	+		HGI48_RS05060	0.47	-1.9
1,060,911	+		HGI48_RS05060	0.47	-0.0
1,060,912	-		HGI48_RS05060	0.47	-0.8
1,060,912	-		HGI48_RS05060	0.47	+0.1
1,061,034	-				-0.2
1,061,076	+		HGI48_RS05060	0.62	-0.1
1,061,076	+		HGI48_RS05060	0.62	+0.1
1,061,077	-				+0.4
1,061,077	-		HGI48_RS05060	0.62	-0.1
1,061,096	+		HGI48_RS05060	0.63	-2.4
1,061,097	-		HGI48_RS05060	0.63	+0.4
1,061,097	-		HGI48_RS05060	0.63	+0.7
1,061,207	+				+2.7
1,061,207	+				+0.8
1,061,207	+		HGI48_RS05060	0.73	+0.7
1,061,207	+		HGI48_RS05060	0.73	-0.3
1,061,207	+		HGI48_RS05060	0.73	+0.2
1,061,207	+		HGI48_RS05060	0.73	+0.3
1,061,207	+		HGI48_RS05060	0.73	-1.6
1,061,208	-		HGI48_RS05060	0.74	+0.2
1,061,208	-		HGI48_RS05060	0.74	-0.3
1,061,208	-		HGI48_RS05060	0.74	-1.6
1,061,211	+		HGI48_RS05060	0.74	-1.6
1,061,211	+				+1.4
1,061,211	+		HGI48_RS05060	0.74	+0.1
1,061,212	-		HGI48_RS05060	0.74	+1.4
1,061,212	-				+0.4
1,061,228	+		HGI48_RS05060	0.75	-0.9
1,061,228	+		HGI48_RS05060	0.75	+1.6
1,061,229	-				+2.3
1,061,313	-		HGI48_RS05060	0.83	-0.6
1,061,335	-		HGI48_RS05060	0.85	-0.6