Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04730 and HGI48_RS04735 are separated by 30 nucleotides HGI48_RS04735 and HGI48_RS04740 are separated by 19 nucleotides HGI48_RS04740 and HGI48_RS04745 overlap by 4 nucleotides
HGI48_RS04730: HGI48_RS04730 - hypothetical protein, at 991,378 to 992,454
_RS04730
HGI48_RS04735: HGI48_RS04735 - hypothetical protein, at 992,485 to 993,561
_RS04735
HGI48_RS04740: HGI48_RS04740 - HAD family hydrolase, at 993,581 to 994,276
_RS04740
HGI48_RS04745: HGI48_RS04745 - hypothetical protein, at 994,273 to 995,142
_RS04745
Position (kb) 992
993
994 Strain fitness (log2 ratio) -2
-1
0
1 at 991.552 kb on - strand, within HGI48_RS04730 at 991.602 kb on + strand, within HGI48_RS04730 at 991.604 kb on + strand, within HGI48_RS04730 at 991.626 kb on + strand, within HGI48_RS04730 at 991.801 kb on - strand, within HGI48_RS04730 at 991.907 kb on + strand, within HGI48_RS04730 at 991.908 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.168 kb on - strand, within HGI48_RS04730 at 992.178 kb on + strand, within HGI48_RS04730 at 992.179 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.649 kb on - strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.734 kb on - strand, within HGI48_RS04735 at 993.094 kb on - strand, within HGI48_RS04735 at 993.098 kb on + strand at 993.117 kb on - strand, within HGI48_RS04735 at 993.347 kb on + strand, within HGI48_RS04735 at 993.401 kb on + strand, within HGI48_RS04735 at 993.402 kb on - strand, within HGI48_RS04735 at 993.480 kb on + strand at 993.575 kb on - strand at 993.603 kb on + strand at 993.732 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.950 kb on - strand, within HGI48_RS04740 at 993.953 kb on - strand, within HGI48_RS04740 at 994.027 kb on - strand, within HGI48_RS04740 at 994.071 kb on - strand at 994.091 kb on - strand, within HGI48_RS04740 at 994.092 kb on + strand, within HGI48_RS04740 at 994.155 kb on + strand, within HGI48_RS04740 at 994.191 kb on + strand, within HGI48_RS04740 at 994.237 kb on - strand at 994.254 kb on + strand at 994.255 kb on - strand at 994.347 kb on + strand at 994.348 kb on - strand at 994.348 kb on - strand at 994.444 kb on + strand, within HGI48_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 991,552 - HGI48_RS04730 0.16 +0.7 991,602 + HGI48_RS04730 0.21 -0.2 991,604 + HGI48_RS04730 0.21 +0.0 991,626 + HGI48_RS04730 0.23 -0.2 991,801 - HGI48_RS04730 0.39 -2.6 991,907 + HGI48_RS04730 0.49 +0.1 991,908 - HGI48_RS04730 0.49 +1.3 992,087 - HGI48_RS04730 0.66 -0.5 992,087 - HGI48_RS04730 0.66 +0.7 992,087 - HGI48_RS04730 0.66 -1.0 992,088 + HGI48_RS04730 0.66 -0.7 992,088 + HGI48_RS04730 0.66 -0.8 992,168 - HGI48_RS04730 0.73 -0.4 992,178 + HGI48_RS04730 0.74 -2.6 992,179 - HGI48_RS04730 0.74 -1.6 992,184 - HGI48_RS04730 0.75 -0.2 992,184 - HGI48_RS04730 0.75 -0.1 992,649 - HGI48_RS04735 0.15 -0.4 992,733 + HGI48_RS04735 0.23 +0.2 992,733 + HGI48_RS04735 0.23 -1.3 992,734 - HGI48_RS04735 0.23 -0.8 993,094 - HGI48_RS04735 0.57 -1.1 993,098 + -1.2 993,117 - HGI48_RS04735 0.59 -0.9 993,347 + HGI48_RS04735 0.80 -2.2 993,401 + HGI48_RS04735 0.85 -0.2 993,402 - HGI48_RS04735 0.85 -0.0 993,480 + +0.7 993,575 - +0.4 993,603 + -0.6 993,732 - HGI48_RS04740 0.22 -0.8 993,950 - HGI48_RS04740 0.53 +0.0 993,950 - HGI48_RS04740 0.53 -1.0 993,950 - HGI48_RS04740 0.53 +0.2 993,953 - HGI48_RS04740 0.53 +0.8 994,027 - HGI48_RS04740 0.64 -0.6 994,071 - +1.2 994,091 - HGI48_RS04740 0.73 +0.2 994,092 + HGI48_RS04740 0.73 -0.8 994,155 + HGI48_RS04740 0.82 -0.0 994,191 + HGI48_RS04740 0.88 +1.2 994,237 - -0.3 994,254 + -0.6 994,255 - +0.0 994,347 + +1.4 994,348 - +1.2 994,348 - +1.4 994,444 + HGI48_RS04745 0.20 -0.3
Or see this region's nucleotide sequence