Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04610 and HGI48_RS04615 overlap by 26 nucleotides HGI48_RS04615 and HGI48_RS04620 are separated by 5 nucleotides HGI48_RS04620 and HGI48_RS04625 are separated by 0 nucleotides
HGI48_RS04610: HGI48_RS04610 - LysR family transcriptional regulator, at 966,180 to 967,136
_RS04610
HGI48_RS04615: HGI48_RS04615 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 967,111 to 967,953
_RS04615
HGI48_RS04620: HGI48_RS04620 - queuosine precursor transporter, at 967,959 to 968,834
_RS04620
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
Position (kb) 967
968 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 966.111 kb on + strand at 966.112 kb on - strand at 966.112 kb on - strand at 966.112 kb on - strand at 966.115 kb on + strand at 966.116 kb on - strand at 966.116 kb on - strand at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.316 kb on + strand, within HGI48_RS04610 at 966.333 kb on - strand, within HGI48_RS04610 at 966.333 kb on - strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.372 kb on + strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand, within HGI48_RS04610 at 966.373 kb on - strand at 966.427 kb on + strand at 966.428 kb on - strand at 966.497 kb on + strand at 966.498 kb on - strand, within HGI48_RS04610 at 966.560 kb on + strand, within HGI48_RS04610 at 966.561 kb on - strand, within HGI48_RS04610 at 966.691 kb on - strand, within HGI48_RS04610 at 966.763 kb on - strand, within HGI48_RS04610 at 966.792 kb on + strand, within HGI48_RS04610 at 966.813 kb on - strand, within HGI48_RS04610 at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand at 966.960 kb on + strand, within HGI48_RS04610 at 966.960 kb on + strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.961 kb on - strand, within HGI48_RS04610 at 966.980 kb on + strand, within HGI48_RS04610 at 966.984 kb on + strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 966.994 kb on - strand, within HGI48_RS04610 at 967.112 kb on + strand at 967.194 kb on + strand at 967.195 kb on - strand at 967.196 kb on + strand, within HGI48_RS04615 at 967.197 kb on - strand, within HGI48_RS04615 at 967.197 kb on - strand, within HGI48_RS04615 at 967.233 kb on - strand, within HGI48_RS04615 at 967.233 kb on - strand, within HGI48_RS04615 at 967.248 kb on + strand, within HGI48_RS04615 at 967.307 kb on + strand, within HGI48_RS04615 at 967.346 kb on + strand, within HGI48_RS04615 at 967.346 kb on + strand, within HGI48_RS04615 at 967.379 kb on + strand, within HGI48_RS04615 at 967.379 kb on + strand, within HGI48_RS04615 at 967.380 kb on - strand, within HGI48_RS04615 at 967.467 kb on - strand, within HGI48_RS04615 at 967.630 kb on + strand, within HGI48_RS04615 at 967.671 kb on + strand, within HGI48_RS04615 at 967.672 kb on - strand, within HGI48_RS04615 at 967.676 kb on + strand, within HGI48_RS04615 at 967.677 kb on - strand, within HGI48_RS04615 at 967.728 kb on + strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.729 kb on - strand, within HGI48_RS04615 at 967.802 kb on + strand, within HGI48_RS04615 at 967.889 kb on + strand at 967.890 kb on - strand at 967.944 kb on + strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.947 kb on + strand at 967.947 kb on + strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 968.021 kb on - strand at 968.047 kb on + strand, within HGI48_RS04620 at 968.048 kb on - strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.192 kb on - strand, within HGI48_RS04620 at 968.258 kb on - strand, within HGI48_RS04620 at 968.311 kb on + strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.324 kb on - strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.462 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.504 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.505 kb on - strand at 968.520 kb on - strand, within HGI48_RS04620 at 968.557 kb on + strand, within HGI48_RS04620 at 968.590 kb on + strand, within HGI48_RS04620 at 968.629 kb on + strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.763 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.838 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 966,111 + -1.2 966,112 - +0.4 966,112 - -1.2 966,112 - +0.3 966,115 + -0.3 966,116 - +1.2 966,116 - +1.0 966,316 + HGI48_RS04610 0.14 +0.3 966,316 + HGI48_RS04610 0.14 -1.2 966,316 + HGI48_RS04610 0.14 -0.9 966,316 + HGI48_RS04610 0.14 -0.7 966,333 - HGI48_RS04610 0.16 +1.4 966,333 - HGI48_RS04610 0.16 -0.2 966,372 + HGI48_RS04610 0.20 -1.0 966,372 + HGI48_RS04610 0.20 +0.4 966,372 + HGI48_RS04610 0.20 -0.5 966,372 + HGI48_RS04610 0.20 -0.8 966,372 + HGI48_RS04610 0.20 -0.6 966,372 + HGI48_RS04610 0.20 -2.7 966,373 - HGI48_RS04610 0.20 -0.3 966,373 - HGI48_RS04610 0.20 +0.1 966,373 - HGI48_RS04610 0.20 -0.6 966,373 - HGI48_RS04610 0.20 -0.8 966,373 - HGI48_RS04610 0.20 +0.4 966,373 - +1.4 966,427 + -1.2 966,428 - +2.4 966,497 + -0.6 966,498 - HGI48_RS04610 0.33 -0.3 966,560 + HGI48_RS04610 0.40 +1.1 966,561 - HGI48_RS04610 0.40 -0.8 966,691 - HGI48_RS04610 0.53 -0.1 966,763 - HGI48_RS04610 0.61 -2.4 966,792 + HGI48_RS04610 0.64 -0.1 966,813 - HGI48_RS04610 0.66 -0.2 966,960 + HGI48_RS04610 0.82 +1.2 966,960 + -0.6 966,960 + HGI48_RS04610 0.82 -0.3 966,960 + HGI48_RS04610 0.82 -1.3 966,961 - HGI48_RS04610 0.82 +0.4 966,961 - HGI48_RS04610 0.82 +1.2 966,961 - HGI48_RS04610 0.82 +0.0 966,961 - HGI48_RS04610 0.82 -0.8 966,980 + HGI48_RS04610 0.84 -0.3 966,984 + HGI48_RS04610 0.84 -1.4 966,994 - HGI48_RS04610 0.85 -0.1 966,994 - HGI48_RS04610 0.85 +0.1 966,994 - HGI48_RS04610 0.85 -1.2 967,112 + +0.6 967,194 + -0.8 967,195 - -0.4 967,196 + HGI48_RS04615 0.10 -0.2 967,197 - HGI48_RS04615 0.10 +0.8 967,197 - HGI48_RS04615 0.10 -1.6 967,233 - HGI48_RS04615 0.14 +0.0 967,233 - HGI48_RS04615 0.14 +0.9 967,248 + HGI48_RS04615 0.16 -0.6 967,307 + HGI48_RS04615 0.23 +0.1 967,346 + HGI48_RS04615 0.28 -0.9 967,346 + HGI48_RS04615 0.28 -1.3 967,379 + HGI48_RS04615 0.32 -1.6 967,379 + HGI48_RS04615 0.32 -0.9 967,380 - HGI48_RS04615 0.32 +1.2 967,467 - HGI48_RS04615 0.42 +0.4 967,630 + HGI48_RS04615 0.62 -1.4 967,671 + HGI48_RS04615 0.66 +0.9 967,672 - HGI48_RS04615 0.67 -0.7 967,676 + HGI48_RS04615 0.67 +0.4 967,677 - HGI48_RS04615 0.67 +0.2 967,728 + HGI48_RS04615 0.73 +0.5 967,729 - HGI48_RS04615 0.73 +0.1 967,729 - HGI48_RS04615 0.73 +0.1 967,729 - HGI48_RS04615 0.73 -2.2 967,802 + HGI48_RS04615 0.82 +0.1 967,889 + +0.4 967,890 - +0.0 967,944 + -1.6 967,945 - -0.1 967,945 - -0.2 967,945 - -0.9 967,947 + +0.1 967,947 + +1.2 967,948 - -1.2 967,948 - +0.0 967,948 - +0.6 967,948 - -0.3 967,948 - +1.2 968,021 - +0.0 968,047 + HGI48_RS04620 0.10 -1.2 968,048 - HGI48_RS04620 0.10 -1.4 968,111 + HGI48_RS04620 0.17 -0.2 968,111 + HGI48_RS04620 0.17 -1.9 968,112 - HGI48_RS04620 0.17 -0.7 968,112 - HGI48_RS04620 0.17 +0.0 968,114 - HGI48_RS04620 0.18 +0.0 968,114 - HGI48_RS04620 0.18 -0.1 968,192 - HGI48_RS04620 0.27 +0.4 968,258 - HGI48_RS04620 0.34 -0.8 968,311 + HGI48_RS04620 0.40 +0.4 968,312 - HGI48_RS04620 0.40 -0.2 968,312 - HGI48_RS04620 0.40 -0.3 968,324 - HGI48_RS04620 0.42 -1.7 968,405 + HGI48_RS04620 0.51 +0.8 968,405 + HGI48_RS04620 0.51 +0.2 968,406 - HGI48_RS04620 0.51 -0.2 968,406 - HGI48_RS04620 0.51 +0.3 968,406 - HGI48_RS04620 0.51 +1.3 968,406 - HGI48_RS04620 0.51 -1.9 968,462 + HGI48_RS04620 0.57 -0.7 968,504 + +1.2 968,504 + HGI48_RS04620 0.62 +0.4 968,504 + +0.4 968,505 - +1.2 968,520 - HGI48_RS04620 0.64 +0.4 968,557 + HGI48_RS04620 0.68 +1.4 968,590 + HGI48_RS04620 0.72 -0.4 968,629 + HGI48_RS04620 0.76 +0.0 968,630 - HGI48_RS04620 0.77 -0.6 968,630 - HGI48_RS04620 0.77 -0.6 968,763 + +0.0 968,836 + +0.4 968,836 + -0.9 968,836 + -0.7 968,837 - +1.1 968,837 - -0.3 968,837 - -0.2 968,837 - +1.0 968,837 - +0.4 968,837 - -0.2 968,838 + -2.4 968,850 + +0.1 968,850 + +0.9 968,850 + -0.3 968,855 + -0.4 968,855 + +2.1 968,855 + -0.1 968,855 + +0.1 968,855 + +0.4 968,855 + +0.4 968,855 + +0.8 968,855 + -1.9 968,855 + -2.6 968,855 + +0.5 968,855 + -0.7 968,855 + +0.6 968,855 + -0.1 968,855 + -1.3 968,855 + -2.6 968,855 + +3.4 968,856 - +2.6 968,856 - +0.4 968,856 - -0.1 968,856 - +0.4 968,856 - -0.3 968,856 - -1.0 968,856 - +1.8 968,856 - -0.1 968,856 - +1.2 968,856 - -1.4 968,856 - -1.2 968,856 - +0.7 968,857 + -1.1 968,857 + -0.2 968,857 + -0.9 968,858 - -0.6 968,858 - -0.2 968,858 - +0.2 968,858 - +0.3
Or see this region's nucleotide sequence