Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04590 and HGI48_RS04595 are separated by 333 nucleotides HGI48_RS04595 and HGI48_RS04600 are separated by 279 nucleotides HGI48_RS04600 and HGI48_RS04605 are separated by 123 nucleotides
HGI48_RS04590: HGI48_RS04590 - multidrug efflux MFS transporter, at 962,333 to 963,526
_RS04590
HGI48_RS04595: HGI48_RS04595 - stress response protein AzuC, at 963,860 to 963,946
_RS04595
HGI48_RS04600: HGI48_RS04600 - hypothetical protein, at 964,226 to 964,849
_RS04600
HGI48_RS04605: HGI48_RS04605 - tartrate dehydrogenase, at 964,973 to 966,058
_RS04605
Position (kb) 964
965 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.432 kb on + strand at 963.432 kb on + strand at 963.433 kb on - strand at 963.433 kb on - strand at 963.433 kb on - strand at 963.589 kb on + strand at 963.589 kb on + strand at 963.603 kb on - strand at 963.606 kb on - strand at 963.606 kb on - strand at 963.653 kb on + strand at 963.757 kb on + strand at 963.875 kb on - strand, within HGI48_RS04595 at 963.880 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.903 kb on - strand, within HGI48_RS04595 at 963.915 kb on - strand, within HGI48_RS04595 at 963.944 kb on + strand at 963.944 kb on + strand at 963.945 kb on - strand at 963.945 kb on - strand at 963.968 kb on + strand at 964.014 kb on + strand at 964.014 kb on + strand at 964.014 kb on + strand at 964.015 kb on - strand at 964.015 kb on - strand at 964.047 kb on + strand at 964.047 kb on + strand at 964.110 kb on + strand at 964.130 kb on - strand at 964.153 kb on - strand at 964.153 kb on - strand at 964.162 kb on - strand at 964.162 kb on - strand at 964.165 kb on + strand at 964.165 kb on + strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.166 kb on - strand at 964.170 kb on + strand at 964.170 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.180 kb on + strand at 964.181 kb on - strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.186 kb on + strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.187 kb on - strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.247 kb on + strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.248 kb on - strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.249 kb on + strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.250 kb on - strand at 964.318 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.322 kb on + strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.323 kb on - strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.324 kb on + strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.325 kb on - strand, within HGI48_RS04600 at 964.356 kb on + strand at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.356 kb on + strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.357 kb on - strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.358 kb on + strand, within HGI48_RS04600 at 964.359 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.390 kb on - strand, within HGI48_RS04600 at 964.453 kb on + strand, within HGI48_RS04600 at 964.472 kb on + strand, within HGI48_RS04600 at 964.473 kb on - strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.475 kb on + strand, within HGI48_RS04600 at 964.498 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.571 kb on + strand, within HGI48_RS04600 at 964.572 kb on - strand at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.572 kb on - strand, within HGI48_RS04600 at 964.613 kb on - strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.643 kb on + strand, within HGI48_RS04600 at 964.673 kb on - strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.686 kb on + strand, within HGI48_RS04600 at 964.687 kb on - strand, within HGI48_RS04600 at 964.718 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.750 kb on + strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.751 kb on - strand, within HGI48_RS04600 at 964.809 kb on + strand at 964.809 kb on + strand at 964.809 kb on + strand at 964.809 kb on + strand at 964.810 kb on - strand at 964.810 kb on - strand at 964.810 kb on - strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.850 kb on + strand at 964.851 kb on - strand at 964.894 kb on + strand at 964.956 kb on + strand at 964.975 kb on - strand at 965.363 kb on + strand at 965.364 kb on - strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.394 kb on + strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.395 kb on - strand, within HGI48_RS04605 at 965.637 kb on + strand, within HGI48_RS04605 at 965.637 kb on + strand, within HGI48_RS04605 at 965.667 kb on + strand, within HGI48_RS04605 at 965.667 kb on + strand, within HGI48_RS04605 at 965.668 kb on - strand, within HGI48_RS04605 at 965.668 kb on - strand, within HGI48_RS04605 at 965.748 kb on + strand, within HGI48_RS04605 at 965.748 kb on + strand, within HGI48_RS04605 at 965.749 kb on - strand, within HGI48_RS04605 at 965.749 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605 at 965.839 kb on - strand, within HGI48_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 963,432 + +1.2 963,432 + -0.4 963,433 - +0.3 963,433 - -0.4 963,433 - +1.2 963,589 + -1.6 963,589 + +0.1 963,603 - -0.8 963,606 - -0.1 963,606 - +0.8 963,653 + -0.3 963,757 + -1.9 963,875 - HGI48_RS04595 0.17 +0.0 963,880 - HGI48_RS04595 0.23 -0.8 963,903 - HGI48_RS04595 0.49 +0.2 963,903 - HGI48_RS04595 0.49 -0.6 963,903 - HGI48_RS04595 0.49 -0.0 963,915 - HGI48_RS04595 0.63 -1.9 963,944 + +0.4 963,944 + +0.7 963,945 - -0.2 963,945 - +0.8 963,968 + -0.2 964,014 + +0.2 964,014 + +0.0 964,014 + +1.4 964,015 - -0.6 964,015 - +1.4 964,047 + -1.9 964,047 + +0.0 964,110 + +0.4 964,130 - -0.8 964,153 - +0.7 964,153 - -0.6 964,162 - +0.3 964,162 - -2.2 964,165 + +0.4 964,165 + +0.4 964,166 - +1.4 964,166 - -0.9 964,166 - +1.2 964,166 - -2.4 964,166 - -0.3 964,166 - +0.0 964,170 + +1.2 964,170 + +0.1 964,180 + +1.0 964,180 + -0.6 964,180 + -1.6 964,181 - -0.6 964,186 + -0.1 964,186 + -0.2 964,186 + -0.2 964,186 + +0.8 964,186 + +0.4 964,187 - +0.2 964,187 - +0.8 964,187 - -0.2 964,187 - -0.0 964,247 + -0.2 964,247 + +0.8 964,247 + -0.3 964,248 - -0.4 964,248 - +0.0 964,248 - -2.2 964,249 + +0.8 964,249 + +1.0 964,249 + +0.1 964,249 + -0.5 964,249 + +1.0 964,249 + -0.6 964,250 - -1.0 964,250 - +1.4 964,250 - +0.7 964,250 - +0.2 964,318 + HGI48_RS04600 0.15 +0.1 964,322 + HGI48_RS04600 0.15 -0.8 964,322 + HGI48_RS04600 0.15 -1.6 964,322 + HGI48_RS04600 0.15 +0.1 964,322 + HGI48_RS04600 0.15 -1.0 964,322 + HGI48_RS04600 0.15 -0.6 964,322 + HGI48_RS04600 0.15 -1.6 964,323 - HGI48_RS04600 0.16 +0.4 964,323 - HGI48_RS04600 0.16 +0.2 964,323 - HGI48_RS04600 0.16 +0.4 964,323 - HGI48_RS04600 0.16 -0.8 964,323 - HGI48_RS04600 0.16 +0.4 964,323 - HGI48_RS04600 0.16 -2.2 964,323 - HGI48_RS04600 0.16 -0.2 964,324 + HGI48_RS04600 0.16 -0.6 964,324 + HGI48_RS04600 0.16 -0.4 964,325 - HGI48_RS04600 0.16 -0.9 964,325 - HGI48_RS04600 0.16 -1.9 964,356 + +1.8 964,356 + HGI48_RS04600 0.21 -3.0 964,356 + HGI48_RS04600 0.21 +0.6 964,356 + HGI48_RS04600 0.21 +1.1 964,356 + HGI48_RS04600 0.21 +0.7 964,356 + HGI48_RS04600 0.21 +0.5 964,356 + HGI48_RS04600 0.21 +1.3 964,357 - HGI48_RS04600 0.21 +0.3 964,357 - HGI48_RS04600 0.21 -0.1 964,357 - HGI48_RS04600 0.21 -0.2 964,357 - HGI48_RS04600 0.21 -1.2 964,357 - HGI48_RS04600 0.21 +0.1 964,357 - HGI48_RS04600 0.21 -0.8 964,357 - HGI48_RS04600 0.21 -1.4 964,358 + HGI48_RS04600 0.21 +0.2 964,358 + HGI48_RS04600 0.21 -0.6 964,359 - HGI48_RS04600 0.21 +1.6 964,390 - HGI48_RS04600 0.26 -0.3 964,390 - HGI48_RS04600 0.26 -2.2 964,453 + HGI48_RS04600 0.36 -1.4 964,472 + HGI48_RS04600 0.39 -0.3 964,473 - HGI48_RS04600 0.40 -1.9 964,475 + HGI48_RS04600 0.40 -0.3 964,475 + HGI48_RS04600 0.40 +1.2 964,498 + HGI48_RS04600 0.44 -0.1 964,571 + HGI48_RS04600 0.55 +0.4 964,571 + HGI48_RS04600 0.55 -1.4 964,571 + HGI48_RS04600 0.55 -0.7 964,571 + HGI48_RS04600 0.55 -0.6 964,571 + HGI48_RS04600 0.55 +0.8 964,571 + HGI48_RS04600 0.55 -2.4 964,571 + HGI48_RS04600 0.55 +0.6 964,572 - -1.2 964,572 - HGI48_RS04600 0.55 +0.4 964,572 - HGI48_RS04600 0.55 +0.4 964,572 - HGI48_RS04600 0.55 -2.7 964,572 - HGI48_RS04600 0.55 +0.4 964,572 - HGI48_RS04600 0.55 +0.6 964,572 - HGI48_RS04600 0.55 +0.2 964,613 - HGI48_RS04600 0.62 -0.9 964,643 + HGI48_RS04600 0.67 -0.2 964,643 + HGI48_RS04600 0.67 -2.4 964,643 + HGI48_RS04600 0.67 -1.2 964,673 - HGI48_RS04600 0.72 -0.2 964,686 + HGI48_RS04600 0.74 -0.6 964,686 + HGI48_RS04600 0.74 +0.3 964,686 + HGI48_RS04600 0.74 -1.4 964,687 - HGI48_RS04600 0.74 -0.2 964,718 + HGI48_RS04600 0.79 -0.9 964,750 + HGI48_RS04600 0.84 +0.5 964,750 + HGI48_RS04600 0.84 -0.7 964,750 + HGI48_RS04600 0.84 -0.7 964,750 + HGI48_RS04600 0.84 -0.1 964,750 + HGI48_RS04600 0.84 +0.1 964,750 + HGI48_RS04600 0.84 -0.2 964,750 + HGI48_RS04600 0.84 +0.9 964,751 - HGI48_RS04600 0.84 +0.6 964,751 - HGI48_RS04600 0.84 +0.4 964,751 - HGI48_RS04600 0.84 +0.2 964,751 - HGI48_RS04600 0.84 -1.0 964,751 - HGI48_RS04600 0.84 -0.4 964,809 + +0.1 964,809 + +1.0 964,809 + -0.6 964,809 + -1.9 964,810 - -0.2 964,810 - +0.0 964,810 - -0.5 964,850 + -1.4 964,850 + +1.4 964,850 + +0.0 964,850 + -0.1 964,850 + -1.2 964,851 - -1.0 964,894 + +1.9 964,956 + +0.2 964,975 - +0.3 965,363 + -1.2 965,364 - HGI48_RS04605 0.36 +0.2 965,394 + HGI48_RS04605 0.39 -2.2 965,394 + HGI48_RS04605 0.39 -0.4 965,394 + -0.2 965,394 + HGI48_RS04605 0.39 +1.2 965,394 + HGI48_RS04605 0.39 -1.4 965,394 + HGI48_RS04605 0.39 +0.1 965,394 + HGI48_RS04605 0.39 -1.9 965,394 + HGI48_RS04605 0.39 +0.4 965,395 - HGI48_RS04605 0.39 -1.4 965,395 - HGI48_RS04605 0.39 +0.3 965,395 - HGI48_RS04605 0.39 +0.4 965,637 + HGI48_RS04605 0.61 -0.1 965,637 + HGI48_RS04605 0.61 -1.4 965,667 + HGI48_RS04605 0.64 -1.6 965,667 + HGI48_RS04605 0.64 -0.4 965,668 - HGI48_RS04605 0.64 -1.4 965,668 - HGI48_RS04605 0.64 -2.4 965,748 + HGI48_RS04605 0.71 -0.3 965,748 + HGI48_RS04605 0.71 -1.7 965,749 - HGI48_RS04605 0.71 -0.1 965,749 - HGI48_RS04605 0.71 -1.9 965,839 - HGI48_RS04605 0.80 +0.1 965,839 - HGI48_RS04605 0.80 -0.5 965,839 - HGI48_RS04605 0.80 -1.7
Or see this region's nucleotide sequence