Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04480

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04475 and HGI48_RS04480 are separated by 93 nucleotidesHGI48_RS04480 and HGI48_RS04485 are separated by 131 nucleotides HGI48_RS04475: HGI48_RS04475 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 936,935 to 937,588 _RS04475 HGI48_RS04480: HGI48_RS04480 - SAM-dependent methyltransferase TehB, at 937,682 to 938,545 _RS04480 HGI48_RS04485: HGI48_RS04485 - NADH:flavorubredoxin reductase NorW, at 938,677 to 939,834 _RS04485 Position (kb) 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 936.781 kb on + strandat 936.821 kb on + strandat 936.914 kb on + strandat 937.617 kb on + strandat 937.618 kb on - strandat 937.777 kb on - strand, within HGI48_RS04480at 937.801 kb on - strand, within HGI48_RS04480at 937.801 kb on - strand, within HGI48_RS04480at 937.803 kb on + strand, within HGI48_RS04480at 937.804 kb on - strand, within HGI48_RS04480at 937.894 kb on - strand, within HGI48_RS04480at 937.894 kb on - strand, within HGI48_RS04480at 937.921 kb on + strand, within HGI48_RS04480at 937.922 kb on - strand, within HGI48_RS04480at 937.967 kb on + strand, within HGI48_RS04480at 937.967 kb on + strandat 937.967 kb on + strand, within HGI48_RS04480at 937.967 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.979 kb on + strand, within HGI48_RS04480at 937.992 kb on + strand, within HGI48_RS04480at 937.993 kb on - strand, within HGI48_RS04480at 938.071 kb on + strand, within HGI48_RS04480at 938.071 kb on + strand, within HGI48_RS04480at 938.072 kb on - strand, within HGI48_RS04480at 938.072 kb on - strand, within HGI48_RS04480at 938.139 kb on + strand, within HGI48_RS04480at 938.150 kb on - strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.196 kb on + strand, within HGI48_RS04480at 938.197 kb on - strandat 938.197 kb on - strand, within HGI48_RS04480at 938.253 kb on + strand, within HGI48_RS04480at 938.254 kb on - strandat 938.254 kb on - strand, within HGI48_RS04480at 938.254 kb on - strand, within HGI48_RS04480at 938.254 kb on - strand, within HGI48_RS04480at 938.256 kb on + strand, within HGI48_RS04480at 938.256 kb on + strandat 938.256 kb on + strand, within HGI48_RS04480at 938.256 kb on + strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.257 kb on - strand, within HGI48_RS04480at 938.274 kb on + strandat 938.274 kb on + strand, within HGI48_RS04480at 938.274 kb on + strand, within HGI48_RS04480at 938.274 kb on + strand, within HGI48_RS04480at 938.275 kb on - strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.341 kb on + strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.342 kb on - strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.343 kb on + strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.344 kb on - strand, within HGI48_RS04480at 938.402 kb on + strand, within HGI48_RS04480at 938.403 kb on - strandat 938.438 kb on + strand, within HGI48_RS04480at 938.524 kb on + strandat 938.524 kb on + strandat 938.525 kb on - strandat 938.525 kb on - strandat 938.526 kb on + strandat 938.527 kb on - strandat 938.546 kb on - strandat 938.566 kb on + strandat 938.567 kb on - strandat 938.568 kb on + strandat 938.569 kb on - strandat 938.569 kb on - strandat 938.569 kb on - strandat 938.574 kb on + strandat 938.575 kb on - strandat 938.575 kb on - strandat 938.575 kb on - strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.579 kb on + strandat 938.580 kb on - strandat 938.583 kb on - strandat 938.583 kb on - strandat 938.612 kb on + strandat 938.616 kb on - strandat 938.616 kb on - strandat 938.618 kb on - strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.678 kb on + strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.679 kb on - strandat 938.827 kb on - strand, within HGI48_RS04485at 938.868 kb on + strand, within HGI48_RS04485at 938.928 kb on + strand, within HGI48_RS04485at 938.928 kb on + strand, within HGI48_RS04485at 938.929 kb on - strand, within HGI48_RS04485at 938.929 kb on - strand, within HGI48_RS04485at 938.937 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strand, within HGI48_RS04485at 938.940 kb on + strandat 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.941 kb on - strand, within HGI48_RS04485at 938.966 kb on - strand, within HGI48_RS04485at 939.029 kb on + strand, within HGI48_RS04485at 939.029 kb on + strand, within HGI48_RS04485at 939.030 kb on - strand, within HGI48_RS04485at 939.034 kb on - strand, within HGI48_RS04485at 939.114 kb on + strand, within HGI48_RS04485at 939.180 kb on + strand, within HGI48_RS04485at 939.180 kb on + strand, within HGI48_RS04485at 939.181 kb on - strand, within HGI48_RS04485at 939.181 kb on - strand, within HGI48_RS04485at 939.358 kb on - strand, within HGI48_RS04485at 939.397 kb on + strand, within HGI48_RS04485at 939.397 kb on + strand, within HGI48_RS04485at 939.444 kb on - strand, within HGI48_RS04485at 939.543 kb on - strand, within HGI48_RS04485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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936,781 + +0.4
936,821 + -0.1
936,914 + -0.1
937,617 + -0.6
937,618 - -2.1
937,777 - HGI48_RS04480 0.11 +0.0
937,801 - HGI48_RS04480 0.14 +0.0
937,801 - HGI48_RS04480 0.14 +0.1
937,803 + HGI48_RS04480 0.14 -1.0
937,804 - HGI48_RS04480 0.14 -0.3
937,894 - HGI48_RS04480 0.25 -1.9
937,894 - HGI48_RS04480 0.25 -0.6
937,921 + HGI48_RS04480 0.28 +0.9
937,922 - HGI48_RS04480 0.28 +1.0
937,967 + HGI48_RS04480 0.33 -0.7
937,967 + +3.0
937,967 + HGI48_RS04480 0.33 -0.6
937,967 + HGI48_RS04480 0.33 +1.4
937,979 + HGI48_RS04480 0.34 -2.1
937,979 + HGI48_RS04480 0.34 +0.8
937,979 + HGI48_RS04480 0.34 -0.1
937,992 + HGI48_RS04480 0.36 +0.4
937,993 - HGI48_RS04480 0.36 -1.0
938,071 + HGI48_RS04480 0.45 +0.1
938,071 + HGI48_RS04480 0.45 -0.7
938,072 - HGI48_RS04480 0.45 +1.1
938,072 - HGI48_RS04480 0.45 -0.3
938,139 + HGI48_RS04480 0.53 -1.9
938,150 - HGI48_RS04480 0.54 +0.5
938,196 + HGI48_RS04480 0.59 +0.4
938,196 + HGI48_RS04480 0.59 -0.1
938,196 + HGI48_RS04480 0.59 +0.4
938,197 - -1.1
938,197 - HGI48_RS04480 0.60 +1.6
938,253 + HGI48_RS04480 0.66 +0.1
938,254 - +1.0
938,254 - HGI48_RS04480 0.66 -2.1
938,254 - HGI48_RS04480 0.66 -1.4
938,254 - HGI48_RS04480 0.66 +0.2
938,256 + HGI48_RS04480 0.66 +1.1
938,256 + +0.4
938,256 + HGI48_RS04480 0.66 +1.9
938,256 + HGI48_RS04480 0.66 +0.4
938,257 - HGI48_RS04480 0.67 -1.0
938,257 - HGI48_RS04480 0.67 -1.4
938,257 - HGI48_RS04480 0.67 +0.1
938,257 - HGI48_RS04480 0.67 +0.7
938,274 + -0.6
938,274 + HGI48_RS04480 0.69 -0.6
938,274 + HGI48_RS04480 0.69 -1.6
938,274 + HGI48_RS04480 0.69 +0.2
938,275 - HGI48_RS04480 0.69 +0.2
938,341 + HGI48_RS04480 0.76 +1.6
938,341 + HGI48_RS04480 0.76 +0.1
938,341 + HGI48_RS04480 0.76 +0.1
938,342 - HGI48_RS04480 0.76 +0.3
938,342 - HGI48_RS04480 0.76 -0.5
938,342 - HGI48_RS04480 0.76 -0.2
938,342 - HGI48_RS04480 0.76 -0.2
938,342 - HGI48_RS04480 0.76 -0.4
938,343 + HGI48_RS04480 0.77 -0.5
938,343 + HGI48_RS04480 0.77 -0.1
938,343 + HGI48_RS04480 0.77 -1.6
938,344 - HGI48_RS04480 0.77 -2.6
938,344 - HGI48_RS04480 0.77 +0.2
938,344 - HGI48_RS04480 0.77 +0.2
938,402 + HGI48_RS04480 0.83 +0.9
938,403 - +0.9
938,438 + HGI48_RS04480 0.88 +0.4
938,524 + -0.1
938,524 + -0.2
938,525 - +0.8
938,525 - +0.1
938,526 + +0.1
938,527 - -0.0
938,546 - +1.9
938,566 + -1.4
938,567 - +1.3
938,568 + -0.8
938,569 - -0.3
938,569 - -0.6
938,569 - -0.1
938,574 + -1.0
938,575 - -1.9
938,575 - -3.0
938,575 - -0.1
938,579 + -0.2
938,579 + -1.1
938,579 + +0.3
938,579 + +1.4
938,580 - +1.3
938,583 - -0.1
938,583 - -0.6
938,612 + -0.6
938,616 - -0.2
938,616 - +0.4
938,618 - -0.3
938,678 + -0.1
938,678 + -0.4
938,678 + -0.3
938,678 + +1.2
938,678 + +0.2
938,678 + -0.1
938,679 - -1.6
938,679 - -0.1
938,679 - +0.4
938,679 - -2.1
938,827 - HGI48_RS04485 0.13 -0.6
938,868 + HGI48_RS04485 0.16 -0.7
938,928 + HGI48_RS04485 0.22 -0.6
938,928 + HGI48_RS04485 0.22 +1.2
938,929 - HGI48_RS04485 0.22 +0.6
938,929 - HGI48_RS04485 0.22 -0.3
938,937 + HGI48_RS04485 0.22 +0.2
938,940 + HGI48_RS04485 0.23 +0.7
938,940 + HGI48_RS04485 0.23 +0.2
938,940 + HGI48_RS04485 0.23 -0.1
938,940 + HGI48_RS04485 0.23 +0.1
938,940 + -1.1
938,941 - HGI48_RS04485 0.23 +0.6
938,941 - HGI48_RS04485 0.23 -0.5
938,941 - HGI48_RS04485 0.23 -0.7
938,941 - HGI48_RS04485 0.23 +0.0
938,941 - HGI48_RS04485 0.23 -0.7
938,966 - HGI48_RS04485 0.25 -0.1
939,029 + HGI48_RS04485 0.30 +1.1
939,029 + HGI48_RS04485 0.30 +0.7
939,030 - HGI48_RS04485 0.30 -0.5
939,034 - HGI48_RS04485 0.31 -0.1
939,114 + HGI48_RS04485 0.38 -0.9
939,180 + HGI48_RS04485 0.43 -3.0
939,180 + HGI48_RS04485 0.43 +1.3
939,181 - HGI48_RS04485 0.44 -1.1
939,181 - HGI48_RS04485 0.44 -0.6
939,358 - HGI48_RS04485 0.59 -0.7
939,397 + HGI48_RS04485 0.62 -0.8
939,397 + HGI48_RS04485 0.62 -0.7
939,444 - HGI48_RS04485 0.66 +1.0
939,543 - HGI48_RS04485 0.75 +0.4

Or see this region's nucleotide sequence