Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04430 and HGI48_RS04435 are separated by 295 nucleotides HGI48_RS04435 and HGI48_RS04440 are separated by 41 nucleotides HGI48_RS04440 and HGI48_RS04445 are separated by 47 nucleotides HGI48_RS04445 and HGI48_RS04450 are separated by 424 nucleotides
HGI48_RS04430: HGI48_RS04430 - helix-turn-helix transcriptional regulator, at 927,838 to 928,401
_RS04430
HGI48_RS04435: HGI48_RS04435 - PTS glucose transporter subunit IIA, at 928,697 to 929,206
_RS04435
HGI48_RS04440: HGI48_RS04440 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 929,248 to 930,975
_RS04440
HGI48_RS04445: HGI48_RS04445 - phosphocarrier protein Hpr, at 931,023 to 931,280
_RS04445
HGI48_RS04450: HGI48_RS04450 - cysteine synthase A, at 931,705 to 932,673
_RS04450
Position (kb) 929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.261 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.420 kb on - strand at 928.422 kb on + strand at 928.422 kb on + strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.430 kb on + strand at 928.476 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.481 kb on - strand at 928.481 kb on - strand at 928.533 kb on + strand at 928.533 kb on + strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.557 kb on + strand at 928.618 kb on - strand at 928.618 kb on - strand at 928.635 kb on - strand at 928.698 kb on + strand at 928.777 kb on + strand, within HGI48_RS04435 at 928.778 kb on - strand, within HGI48_RS04435 at 929.042 kb on - strand, within HGI48_RS04435 at 929.084 kb on + strand at 929.085 kb on - strand, within HGI48_RS04435 at 929.218 kb on - strand at 929.224 kb on + strand at 929.225 kb on - strand at 929.228 kb on - strand at 929.268 kb on + strand at 929.293 kb on + strand at 929.293 kb on + strand at 929.294 kb on - strand at 929.318 kb on - strand at 929.351 kb on + strand at 929.351 kb on + strand at 929.352 kb on - strand at 929.437 kb on + strand, within HGI48_RS04440 at 929.438 kb on - strand, within HGI48_RS04440 at 929.442 kb on + strand, within HGI48_RS04440 at 929.443 kb on - strand, within HGI48_RS04440 at 929.443 kb on - strand at 929.443 kb on - strand, within HGI48_RS04440 at 929.555 kb on + strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand at 929.598 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.892 kb on + strand, within HGI48_RS04440 at 929.945 kb on + strand, within HGI48_RS04440 at 930.026 kb on + strand, within HGI48_RS04440 at 930.027 kb on - strand at 930.240 kb on - strand, within HGI48_RS04440 at 930.240 kb on - strand at 930.293 kb on + strand, within HGI48_RS04440 at 930.307 kb on + strand, within HGI48_RS04440 at 930.588 kb on + strand, within HGI48_RS04440 at 930.588 kb on + strand, within HGI48_RS04440 at 930.589 kb on - strand, within HGI48_RS04440 at 930.589 kb on - strand, within HGI48_RS04440 at 930.748 kb on - strand, within HGI48_RS04440 at 930.748 kb on - strand, within HGI48_RS04440 at 930.807 kb on + strand at 930.958 kb on + strand at 930.958 kb on + strand at 930.958 kb on + strand at 930.959 kb on - strand at 930.959 kb on - strand at 930.986 kb on + strand at 930.986 kb on + strand at 930.987 kb on - strand at 930.987 kb on - strand at 930.987 kb on - strand at 930.987 kb on - strand at 931.263 kb on + strand at 931.263 kb on + strand at 931.324 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.336 kb on + strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.337 kb on - strand at 931.340 kb on + strand at 931.340 kb on + strand at 931.340 kb on + strand at 931.505 kb on - strand at 931.510 kb on + strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.511 kb on - strand at 931.568 kb on - strand at 931.571 kb on - strand at 931.571 kb on - strand at 931.596 kb on + strand at 931.597 kb on - strand at 931.597 kb on - strand at 931.652 kb on + strand at 931.658 kb on - strand at 931.681 kb on - strand at 931.687 kb on + strand at 931.688 kb on - strand at 931.688 kb on - strand at 931.688 kb on - strand at 931.706 kb on + strand at 931.707 kb on - strand at 931.707 kb on - strand at 931.752 kb on + strand at 931.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 928,260 + HGI48_RS04430 0.75 -0.1 928,260 + HGI48_RS04430 0.75 -1.1 928,260 + HGI48_RS04430 0.75 -1.3 928,261 - +0.4 928,392 + -0.7 928,392 + -1.1 928,392 + +0.9 928,392 + -1.6 928,419 + +0.7 928,419 + +0.1 928,419 + -0.4 928,420 - +0.6 928,422 + -0.0 928,422 + -0.7 928,423 - +0.9 928,423 - -1.9 928,423 - -2.0 928,423 - -1.4 928,430 + -0.3 928,476 + +0.1 928,480 + +0.4 928,480 + +0.2 928,480 + +1.0 928,480 + +0.4 928,480 + -0.1 928,480 + -0.6 928,481 - -0.4 928,481 - +0.4 928,533 + -0.9 928,533 + -1.4 928,534 - -0.9 928,534 - -0.9 928,534 - -0.9 928,557 + -0.6 928,618 - -0.8 928,618 - -0.7 928,635 - -2.1 928,698 + +0.4 928,777 + HGI48_RS04435 0.16 -2.6 928,778 - HGI48_RS04435 0.16 -0.7 929,042 - HGI48_RS04435 0.68 -2.9 929,084 + +0.4 929,085 - HGI48_RS04435 0.76 -1.0 929,218 - -0.1 929,224 + -0.4 929,225 - -0.7 929,228 - +0.0 929,268 + -2.1 929,293 + +0.2 929,293 + -1.6 929,294 - +0.1 929,318 - -2.4 929,351 + -1.1 929,351 + -3.4 929,352 - -1.0 929,437 + HGI48_RS04440 0.11 -1.9 929,438 - HGI48_RS04440 0.11 -0.9 929,442 + HGI48_RS04440 0.11 -0.6 929,443 - HGI48_RS04440 0.11 -0.4 929,443 - -0.1 929,443 - HGI48_RS04440 0.11 -0.6 929,555 + HGI48_RS04440 0.18 -1.4 929,588 - HGI48_RS04440 0.20 -0.3 929,588 - HGI48_RS04440 0.20 -0.2 929,598 + HGI48_RS04440 0.20 -0.0 929,598 + HGI48_RS04440 0.20 -1.1 929,598 + -1.1 929,598 + HGI48_RS04440 0.20 +0.1 929,608 + HGI48_RS04440 0.21 -0.0 929,608 + HGI48_RS04440 0.21 -1.6 929,892 + HGI48_RS04440 0.37 -1.1 929,945 + HGI48_RS04440 0.40 +0.2 930,026 + HGI48_RS04440 0.45 -2.0 930,027 - +1.2 930,240 - HGI48_RS04440 0.57 -0.4 930,240 - -1.1 930,293 + HGI48_RS04440 0.60 +0.4 930,307 + HGI48_RS04440 0.61 -0.4 930,588 + HGI48_RS04440 0.78 -2.4 930,588 + HGI48_RS04440 0.78 +0.6 930,589 - HGI48_RS04440 0.78 -1.1 930,589 - HGI48_RS04440 0.78 +0.7 930,748 - HGI48_RS04440 0.87 -2.7 930,748 - HGI48_RS04440 0.87 -0.8 930,807 + +0.1 930,958 + -1.4 930,958 + +0.1 930,958 + -0.6 930,959 - +0.2 930,959 - -2.1 930,986 + +0.1 930,986 + +1.4 930,987 - -1.1 930,987 - -0.1 930,987 - -0.1 930,987 - +0.8 931,263 + -3.0 931,263 + +0.4 931,324 + -1.9 931,336 + -0.1 931,336 + -0.7 931,336 + -1.1 931,336 + -0.3 931,337 - +0.0 931,337 - -0.6 931,337 - -0.2 931,337 - -1.7 931,340 + +0.0 931,340 + +0.0 931,340 + +0.4 931,505 - +0.1 931,510 + -1.6 931,511 - -0.6 931,511 - -0.6 931,511 - +0.4 931,511 - -0.7 931,511 - -2.1 931,568 - -0.8 931,571 - +0.3 931,571 - -1.7 931,596 + -0.4 931,597 - -2.4 931,597 - +1.4 931,652 + -1.4 931,658 - +0.7 931,681 - -0.6 931,687 + +1.3 931,688 - +0.2 931,688 - +1.0 931,688 - +2.4 931,706 + +0.1 931,707 - -1.1 931,707 - -2.4 931,752 + +1.1 931,761 - +0.4
Or see this region's nucleotide sequence