Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04345 and HGI48_RS04350 are separated by 57 nucleotides HGI48_RS04350 and HGI48_RS04355 overlap by 4 nucleotides
HGI48_RS04345: HGI48_RS04345 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 910,013 to 912,292
_RS04345
HGI48_RS04350: HGI48_RS04350 - YaiI/YqxD family protein, at 912,350 to 912,799
_RS04350
HGI48_RS04355: HGI48_RS04355 - oxygen-dependent coproporphyrinogen oxidase, at 912,796 to 913,734
_RS04355
Position (kb) 912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 911.540 kb on + strand, within HGI48_RS04345 at 911.552 kb on + strand, within HGI48_RS04345 at 911.553 kb on - strand, within HGI48_RS04345 at 911.686 kb on + strand, within HGI48_RS04345 at 911.687 kb on - strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.690 kb on + strand, within HGI48_RS04345 at 911.691 kb on - strand at 911.691 kb on - strand, within HGI48_RS04345 at 911.803 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.807 kb on + strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 911.808 kb on - strand, within HGI48_RS04345 at 912.131 kb on + strand at 912.131 kb on + strand at 912.131 kb on + strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.132 kb on - strand at 912.290 kb on + strand at 912.413 kb on + strand, within HGI48_RS04350 at 912.413 kb on + strand, within HGI48_RS04350 at 912.414 kb on - strand, within HGI48_RS04350 at 912.414 kb on - strand at 912.438 kb on - strand at 912.507 kb on + strand, within HGI48_RS04350 at 912.508 kb on - strand, within HGI48_RS04350 at 912.686 kb on - strand, within HGI48_RS04350 at 912.755 kb on + strand at 912.755 kb on + strand at 912.755 kb on + strand at 912.758 kb on + strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.759 kb on - strand at 912.861 kb on - strand at 913.007 kb on - strand, within HGI48_RS04355 at 913.221 kb on - strand, within HGI48_RS04355 at 913.242 kb on - strand, within HGI48_RS04355 at 913.251 kb on - strand, within HGI48_RS04355 at 913.363 kb on + strand, within HGI48_RS04355 at 913.428 kb on - strand, within HGI48_RS04355 at 913.568 kb on - strand, within HGI48_RS04355 at 913.636 kb on - strand at 913.688 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.735 kb on - strand at 913.745 kb on - strand at 913.772 kb on + strand at 913.772 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.785 kb on + strand at 913.786 kb on - strand at 913.788 kb on + strand at 913.788 kb on + strand at 913.794 kb on + strand at 913.794 kb on + strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.795 kb on - strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.797 kb on + strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand at 913.798 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 911,540 + HGI48_RS04345 0.67 -1.3 911,552 + HGI48_RS04345 0.68 -1.1 911,553 - HGI48_RS04345 0.68 -0.8 911,686 + HGI48_RS04345 0.73 +0.3 911,687 - HGI48_RS04345 0.73 -0.5 911,690 + HGI48_RS04345 0.74 -0.9 911,690 + HGI48_RS04345 0.74 -0.4 911,690 + HGI48_RS04345 0.74 -0.6 911,690 + +0.5 911,690 + HGI48_RS04345 0.74 -0.5 911,690 + HGI48_RS04345 0.74 -0.7 911,690 + HGI48_RS04345 0.74 -0.5 911,691 - +0.5 911,691 - HGI48_RS04345 0.74 +0.0 911,803 + HGI48_RS04345 0.79 +0.5 911,807 + HGI48_RS04345 0.79 +0.0 911,807 + +2.2 911,807 + HGI48_RS04345 0.79 -1.2 911,807 + HGI48_RS04345 0.79 -0.3 911,807 + HGI48_RS04345 0.79 -0.7 911,808 - HGI48_RS04345 0.79 -0.5 911,808 - HGI48_RS04345 0.79 +0.9 911,808 - HGI48_RS04345 0.79 +0.3 912,131 + -1.9 912,131 + -1.7 912,131 + -0.3 912,132 - -1.7 912,132 - -0.3 912,132 - +0.5 912,132 - -0.7 912,132 - -0.9 912,290 + -0.1 912,413 + HGI48_RS04350 0.14 -1.9 912,413 + HGI48_RS04350 0.14 +1.0 912,414 - HGI48_RS04350 0.14 -0.0 912,414 - +2.0 912,438 - +0.9 912,507 + HGI48_RS04350 0.35 -0.2 912,508 - HGI48_RS04350 0.35 +1.0 912,686 - HGI48_RS04350 0.75 -0.1 912,755 + -0.8 912,755 + -0.5 912,755 + -0.9 912,758 + -0.1 912,759 - -1.5 912,759 - +0.5 912,759 - +0.5 912,759 - -0.8 912,759 - -0.1 912,861 - -2.7 913,007 - HGI48_RS04355 0.22 +0.5 913,221 - HGI48_RS04355 0.45 -0.3 913,242 - HGI48_RS04355 0.47 -0.5 913,251 - HGI48_RS04355 0.48 -1.9 913,363 + HGI48_RS04355 0.60 -2.1 913,428 - HGI48_RS04355 0.67 +0.1 913,568 - HGI48_RS04355 0.82 -2.9 913,636 - -1.1 913,688 - -0.1 913,735 - -1.4 913,735 - +0.2 913,735 - -2.6 913,745 - -0.8 913,772 + -1.1 913,772 + -0.3 913,785 + -1.4 913,785 + +0.6 913,785 + +0.1 913,785 + -0.6 913,786 - -2.3 913,788 + -0.3 913,788 + +0.4 913,794 + -2.6 913,794 + +0.4 913,795 - -1.4 913,795 - +1.1 913,795 - -1.0 913,795 - -0.8 913,795 - +0.2 913,795 - -0.6 913,795 - -0.1 913,797 + -1.9 913,797 + +0.4 913,797 + +0.4 913,797 + -0.8 913,797 + -0.1 913,797 + -1.0 913,797 + -0.6 913,798 - -0.6 913,798 - +0.8 913,798 - +0.4 913,798 - -0.4 913,798 - +0.0 913,798 - +0.4 913,798 - -1.4 913,798 - +0.9
Or see this region's nucleotide sequence