Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04305 and HGI48_RS04310 overlap by 8 nucleotides HGI48_RS04310 and HGI48_RS04315 are separated by 58 nucleotides HGI48_RS04315 and HGI48_RS04320 are separated by 111 nucleotides HGI48_RS04320 and HGI48_RS04325 are separated by 83 nucleotides
HGI48_RS04305: HGI48_RS04305 - type II toxin-antitoxin system RatA family toxin, at 902,617 to 903,051
_RS04305
HGI48_RS04310: HGI48_RS04310 - RnfH family protein, at 903,044 to 903,337
_RS04310
HGI48_RS04315: HGI48_RS04315 - outer membrane protein assembly factor BamE, at 903,396 to 903,740
_RS04315
HGI48_RS04320: HGI48_RS04320 - DNA repair protein RecN, at 903,852 to 905,513
_RS04320
HGI48_RS04325: HGI48_RS04325 - NAD(+) kinase, at 905,597 to 906,475
_RS04325
Position (kb) 903
904
905
906 Strain fitness (log2 ratio) -2
-1
0
1
2 at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.916 kb on + strand, within HGI48_RS04305 at 902.917 kb on - strand at 903.040 kb on + strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.041 kb on - strand at 903.140 kb on - strand, within HGI48_RS04310 at 903.295 kb on - strand at 903.397 kb on + strand at 903.397 kb on + strand at 903.398 kb on - strand at 903.398 kb on - strand at 903.514 kb on + strand, within HGI48_RS04315 at 903.514 kb on + strand, within HGI48_RS04315 at 903.515 kb on - strand, within HGI48_RS04315 at 903.515 kb on - strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.517 kb on + strand, within HGI48_RS04315 at 903.518 kb on - strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand, within HGI48_RS04315 at 903.568 kb on + strand at 903.569 kb on - strand, within HGI48_RS04315 at 903.609 kb on + strand, within HGI48_RS04315 at 903.628 kb on + strand, within HGI48_RS04315 at 903.629 kb on - strand, within HGI48_RS04315 at 903.629 kb on - strand, within HGI48_RS04315 at 903.660 kb on + strand, within HGI48_RS04315 at 903.661 kb on - strand, within HGI48_RS04315 at 903.661 kb on - strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.695 kb on + strand, within HGI48_RS04315 at 903.696 kb on - strand, within HGI48_RS04315 at 903.732 kb on - strand at 903.741 kb on - strand at 903.747 kb on + strand at 903.747 kb on + strand at 903.747 kb on + strand at 903.748 kb on - strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.764 kb on + strand at 903.765 kb on - strand at 903.765 kb on - strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.778 kb on + strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.779 kb on - strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.781 kb on + strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.782 kb on - strand at 903.818 kb on + strand at 903.853 kb on + strand at 903.853 kb on + strand at 903.854 kb on - strand at 903.995 kb on + strand at 904.006 kb on + strand at 904.007 kb on - strand at 904.064 kb on + strand, within HGI48_RS04320 at 904.064 kb on + strand, within HGI48_RS04320 at 904.176 kb on - strand at 904.510 kb on - strand, within HGI48_RS04320 at 904.510 kb on - strand, within HGI48_RS04320 at 904.527 kb on + strand, within HGI48_RS04320 at 904.527 kb on + strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.528 kb on - strand, within HGI48_RS04320 at 904.537 kb on + strand, within HGI48_RS04320 at 904.537 kb on + strand at 904.618 kb on + strand, within HGI48_RS04320 at 904.619 kb on - strand, within HGI48_RS04320 at 904.873 kb on + strand, within HGI48_RS04320 at 904.874 kb on - strand, within HGI48_RS04320 at 904.940 kb on - strand, within HGI48_RS04320 at 905.049 kb on + strand, within HGI48_RS04320 at 905.049 kb on + strand at 905.050 kb on - strand at 905.050 kb on - strand, within HGI48_RS04320 at 905.068 kb on + strand, within HGI48_RS04320 at 905.104 kb on - strand, within HGI48_RS04320 at 905.399 kb on + strand at 905.517 kb on - strand at 905.526 kb on + strand at 905.531 kb on - strand at 905.546 kb on + strand at 905.550 kb on + strand at 905.551 kb on - strand at 905.573 kb on - strand at 905.578 kb on - strand at 905.592 kb on + strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand at 906.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 902,916 + HGI48_RS04305 0.69 -1.5 902,916 + HGI48_RS04305 0.69 +0.5 902,916 + HGI48_RS04305 0.69 -1.1 902,917 - +1.2 903,040 + +1.8 903,041 - +0.5 903,041 - +0.4 903,041 - -0.1 903,140 - HGI48_RS04310 0.33 +1.3 903,295 - +0.9 903,397 + -0.3 903,397 + -2.4 903,398 - -0.2 903,398 - +0.5 903,514 + HGI48_RS04315 0.34 -2.1 903,514 + HGI48_RS04315 0.34 -2.4 903,515 - HGI48_RS04315 0.34 -2.5 903,515 - HGI48_RS04315 0.34 -1.1 903,517 + HGI48_RS04315 0.35 +0.7 903,517 + HGI48_RS04315 0.35 -1.2 903,517 + HGI48_RS04315 0.35 -1.3 903,518 - HGI48_RS04315 0.35 -0.3 903,568 + HGI48_RS04315 0.50 +0.9 903,568 + HGI48_RS04315 0.50 -2.1 903,568 + HGI48_RS04315 0.50 -1.5 903,568 + +2.2 903,569 - HGI48_RS04315 0.50 -2.4 903,609 + HGI48_RS04315 0.62 +0.1 903,628 + HGI48_RS04315 0.67 -1.1 903,629 - HGI48_RS04315 0.68 +0.0 903,629 - HGI48_RS04315 0.68 -1.0 903,660 + HGI48_RS04315 0.77 -0.9 903,661 - HGI48_RS04315 0.77 -2.7 903,661 - HGI48_RS04315 0.77 -1.9 903,695 + HGI48_RS04315 0.87 -1.5 903,695 + HGI48_RS04315 0.87 -0.3 903,695 + HGI48_RS04315 0.87 -1.9 903,696 - HGI48_RS04315 0.87 -0.9 903,732 - -0.5 903,741 - +0.5 903,747 + -1.9 903,747 + -1.3 903,747 + -1.3 903,748 - -0.5 903,764 + -0.7 903,764 + -1.1 903,764 + +1.3 903,764 + -0.9 903,765 - +0.2 903,765 - +0.5 903,778 + -0.5 903,778 + -1.1 903,778 + -0.4 903,778 + -0.1 903,778 + -1.6 903,779 - -0.9 903,779 - -0.8 903,779 - +0.0 903,779 - -0.2 903,779 - +0.5 903,779 - +0.6 903,781 + -0.9 903,781 + +0.8 903,781 + -0.6 903,781 + -0.5 903,782 - -0.9 903,782 - +0.5 903,782 - +0.9 903,782 - +0.2 903,818 + -0.5 903,853 + -1.5 903,853 + -1.5 903,854 - +1.2 903,995 + +0.0 904,006 + +0.5 904,007 - +1.0 904,064 + HGI48_RS04320 0.13 +1.3 904,064 + HGI48_RS04320 0.13 -0.7 904,176 - +0.5 904,510 - HGI48_RS04320 0.40 -1.6 904,510 - HGI48_RS04320 0.40 -0.5 904,527 + HGI48_RS04320 0.41 -0.7 904,527 + HGI48_RS04320 0.41 -0.3 904,528 - HGI48_RS04320 0.41 +0.1 904,528 - HGI48_RS04320 0.41 -0.1 904,528 - HGI48_RS04320 0.41 +0.8 904,537 + HGI48_RS04320 0.41 +0.5 904,537 + +1.0 904,618 + HGI48_RS04320 0.46 -0.4 904,619 - HGI48_RS04320 0.46 -1.9 904,873 + HGI48_RS04320 0.61 -0.5 904,874 - HGI48_RS04320 0.61 -0.3 904,940 - HGI48_RS04320 0.65 -2.1 905,049 + HGI48_RS04320 0.72 -0.1 905,049 + +2.3 905,050 - +1.5 905,050 - HGI48_RS04320 0.72 -0.5 905,068 + HGI48_RS04320 0.73 -0.4 905,104 - HGI48_RS04320 0.75 -0.9 905,399 + -1.7 905,517 - +0.1 905,526 + -0.3 905,531 - +0.3 905,546 + -0.0 905,550 + -2.7 905,551 - -0.9 905,573 - -0.5 905,578 - +0.5 905,592 + +1.3 906,487 - -0.2 906,487 - -2.0 906,487 - -0.1 906,487 - -0.5
Or see this region's nucleotide sequence