Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04240 and HGI48_RS04245 are separated by 36 nucleotides HGI48_RS04245 and HGI48_RS04250 are separated by 362 nucleotides HGI48_RS04250 and HGI48_RS04255 are separated by 340 nucleotides HGI48_RS04255 and HGI48_RS04260 overlap by 4 nucleotides HGI48_RS04260 and HGI48_RS04265 overlap by 11 nucleotides
HGI48_RS04240: HGI48_RS04240 - hypothetical protein, at 893,263 to 893,640
_RS04240
HGI48_RS04245: HGI48_RS04245 - DUF4755 domain-containing protein, at 893,677 to 894,171
_RS04245
HGI48_RS04250: HGI48_RS04250 - MobA/MobL family protein, at 894,534 to 895,835
_RS04250
HGI48_RS04255: HGI48_RS04255 - hypothetical protein, at 896,176 to 896,361
_RS04255
HGI48_RS04260: HGI48_RS04260 - hypothetical protein, at 896,358 to 896,693
_RS04260
HGI48_RS04265: HGI48_RS04265 - hypothetical protein, at 896,683 to 897,033
_RS04265
Position (kb) 894
895
896 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 893.892 kb on + strand, within HGI48_RS04245 at 893.983 kb on + strand, within HGI48_RS04245 at 893.997 kb on + strand, within HGI48_RS04245 at 894.052 kb on + strand, within HGI48_RS04245 at 894.101 kb on + strand, within HGI48_RS04245 at 894.208 kb on + strand at 894.220 kb on + strand at 894.221 kb on - strand at 894.221 kb on - strand at 894.348 kb on - strand at 894.432 kb on - strand at 894.535 kb on + strand at 894.568 kb on + strand at 894.569 kb on - strand at 894.569 kb on - strand at 894.588 kb on - strand at 894.636 kb on - strand at 894.778 kb on - strand, within HGI48_RS04250 at 894.784 kb on - strand, within HGI48_RS04250 at 894.998 kb on + strand, within HGI48_RS04250 at 894.998 kb on + strand, within HGI48_RS04250 at 894.999 kb on - strand at 894.999 kb on - strand, within HGI48_RS04250 at 895.052 kb on + strand, within HGI48_RS04250 at 895.052 kb on + strand, within HGI48_RS04250 at 895.053 kb on - strand at 895.053 kb on - strand, within HGI48_RS04250 at 895.053 kb on - strand at 895.076 kb on + strand, within HGI48_RS04250 at 895.076 kb on + strand, within HGI48_RS04250 at 895.077 kb on - strand, within HGI48_RS04250 at 895.077 kb on - strand, within HGI48_RS04250 at 895.098 kb on + strand, within HGI48_RS04250 at 895.098 kb on + strand, within HGI48_RS04250 at 895.099 kb on - strand, within HGI48_RS04250 at 895.099 kb on - strand, within HGI48_RS04250 at 895.166 kb on + strand, within HGI48_RS04250 at 895.182 kb on + strand, within HGI48_RS04250 at 895.233 kb on - strand, within HGI48_RS04250 at 895.347 kb on + strand, within HGI48_RS04250 at 895.347 kb on + strand, within HGI48_RS04250 at 895.418 kb on + strand, within HGI48_RS04250 at 895.429 kb on - strand, within HGI48_RS04250 at 895.429 kb on - strand, within HGI48_RS04250 at 895.470 kb on + strand, within HGI48_RS04250 at 895.471 kb on - strand, within HGI48_RS04250 at 895.472 kb on + strand at 895.568 kb on + strand, within HGI48_RS04250 at 895.743 kb on + strand at 895.781 kb on + strand at 895.781 kb on + strand at 895.784 kb on + strand at 895.827 kb on + strand at 896.050 kb on + strand at 896.267 kb on + strand, within HGI48_RS04255 at 896.271 kb on + strand, within HGI48_RS04255 at 896.323 kb on - strand, within HGI48_RS04255 at 896.389 kb on - strand at 896.523 kb on - strand, within HGI48_RS04260
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 893,892 + HGI48_RS04245 0.43 -0.5 893,983 + HGI48_RS04245 0.62 +0.1 893,997 + HGI48_RS04245 0.65 -1.1 894,052 + HGI48_RS04245 0.76 -4.2 894,101 + HGI48_RS04245 0.86 -0.5 894,208 + -0.4 894,220 + +0.0 894,221 - +0.9 894,221 - -0.7 894,348 - -1.1 894,432 - -2.4 894,535 + -0.6 894,568 + +0.9 894,569 - +1.0 894,569 - +0.2 894,588 - -0.3 894,636 - +0.1 894,778 - HGI48_RS04250 0.19 +0.1 894,784 - HGI48_RS04250 0.19 +0.5 894,998 + HGI48_RS04250 0.36 +0.0 894,998 + HGI48_RS04250 0.36 -0.1 894,999 - +0.5 894,999 - HGI48_RS04250 0.36 -1.7 895,052 + HGI48_RS04250 0.40 -0.3 895,052 + HGI48_RS04250 0.40 -0.5 895,053 - +1.5 895,053 - HGI48_RS04250 0.40 +0.5 895,053 - +0.5 895,076 + HGI48_RS04250 0.42 -0.2 895,076 + HGI48_RS04250 0.42 +0.2 895,077 - HGI48_RS04250 0.42 +0.0 895,077 - HGI48_RS04250 0.42 +1.1 895,098 + HGI48_RS04250 0.43 +0.1 895,098 + HGI48_RS04250 0.43 +0.2 895,099 - HGI48_RS04250 0.43 +1.0 895,099 - HGI48_RS04250 0.43 -0.5 895,166 + HGI48_RS04250 0.49 -1.3 895,182 + HGI48_RS04250 0.50 -0.5 895,233 - HGI48_RS04250 0.54 +1.6 895,347 + HGI48_RS04250 0.62 -1.7 895,347 + HGI48_RS04250 0.62 -1.4 895,418 + HGI48_RS04250 0.68 -1.0 895,429 - HGI48_RS04250 0.69 -0.5 895,429 - HGI48_RS04250 0.69 -1.1 895,470 + HGI48_RS04250 0.72 +0.7 895,471 - HGI48_RS04250 0.72 -0.6 895,472 + +1.7 895,568 + HGI48_RS04250 0.79 +1.0 895,743 + -0.7 895,781 + -0.3 895,781 + -0.8 895,784 + -0.2 895,827 + +0.1 896,050 + -1.5 896,267 + HGI48_RS04255 0.49 -1.9 896,271 + HGI48_RS04255 0.51 -0.3 896,323 - HGI48_RS04255 0.79 +0.2 896,389 - -2.0 896,523 - HGI48_RS04260 0.49 -0.4
Or see this region's nucleotide sequence