Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04225 and HGI48_RS04230 are separated by 584 nucleotidesHGI48_RS04230 and HGI48_RS04235 are separated by 878 nucleotides HGI48_RS04225: HGI48_RS04225 - hypothetical protein, at 889,196 to 889,498 _RS04225 HGI48_RS04230: HGI48_RS04230 - dienelactone hydrolase family protein, at 890,083 to 891,261 _RS04230 HGI48_RS04235: HGI48_RS04235 - AlpA family transcriptional regulator, at 892,140 to 892,343 _RS04235 Position (kb) 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.183 kb on + strandat 889.246 kb on + strand, within HGI48_RS04225at 889.253 kb on + strand, within HGI48_RS04225at 889.254 kb on - strandat 889.254 kb on - strand, within HGI48_RS04225at 889.254 kb on - strand, within HGI48_RS04225at 889.254 kb on - strand, within HGI48_RS04225at 889.322 kb on - strandat 889.418 kb on + strandat 889.419 kb on - strand, within HGI48_RS04225at 889.448 kb on - strand, within HGI48_RS04225at 889.468 kb on + strandat 889.503 kb on + strandat 889.504 kb on - strandat 889.533 kb on - strandat 889.535 kb on + strandat 889.614 kb on + strandat 889.622 kb on - strandat 889.770 kb on - strandat 889.873 kb on + strandat 889.979 kb on - strandat 889.999 kb on + strandat 889.999 kb on + strandat 889.999 kb on + strandat 890.004 kb on + strandat 890.004 kb on + strandat 890.004 kb on + strandat 890.005 kb on - strandat 890.007 kb on + strandat 890.010 kb on + strandat 890.010 kb on + strandat 890.011 kb on - strandat 890.011 kb on - strandat 890.011 kb on - strandat 890.013 kb on + strandat 890.014 kb on - strandat 890.050 kb on + strandat 890.055 kb on + strandat 890.055 kb on + strandat 890.114 kb on + strandat 890.114 kb on + strandat 890.114 kb on + strandat 890.114 kb on + strandat 890.115 kb on - strandat 890.123 kb on + strandat 890.350 kb on - strand, within HGI48_RS04230at 890.350 kb on - strand, within HGI48_RS04230at 890.391 kb on + strand, within HGI48_RS04230at 890.392 kb on - strand, within HGI48_RS04230at 890.392 kb on - strand, within HGI48_RS04230at 890.519 kb on + strand, within HGI48_RS04230at 890.519 kb on + strand, within HGI48_RS04230at 890.519 kb on + strand, within HGI48_RS04230at 890.519 kb on + strand, within HGI48_RS04230at 890.519 kb on + strand, within HGI48_RS04230at 890.519 kb on + strandat 890.519 kb on + strand, within HGI48_RS04230at 890.520 kb on - strand, within HGI48_RS04230at 890.520 kb on - strand, within HGI48_RS04230at 890.520 kb on - strand, within HGI48_RS04230at 890.523 kb on + strand, within HGI48_RS04230at 890.529 kb on + strand, within HGI48_RS04230at 890.529 kb on + strand, within HGI48_RS04230at 890.530 kb on - strand, within HGI48_RS04230at 890.628 kb on - strandat 890.628 kb on - strand, within HGI48_RS04230at 890.657 kb on + strand, within HGI48_RS04230at 890.657 kb on + strand, within HGI48_RS04230at 890.657 kb on + strand, within HGI48_RS04230at 890.670 kb on + strand, within HGI48_RS04230at 890.671 kb on - strand, within HGI48_RS04230at 890.730 kb on - strand, within HGI48_RS04230at 890.766 kb on + strand, within HGI48_RS04230at 890.766 kb on + strand, within HGI48_RS04230at 890.767 kb on - strand, within HGI48_RS04230at 890.772 kb on + strand, within HGI48_RS04230at 890.772 kb on + strand, within HGI48_RS04230at 890.785 kb on + strand, within HGI48_RS04230at 890.785 kb on + strand, within HGI48_RS04230at 890.786 kb on - strand, within HGI48_RS04230at 890.786 kb on - strand, within HGI48_RS04230at 890.843 kb on - strand, within HGI48_RS04230at 890.843 kb on - strand, within HGI48_RS04230at 890.872 kb on - strand, within HGI48_RS04230at 890.911 kb on - strandat 890.912 kb on + strandat 890.912 kb on + strand, within HGI48_RS04230at 890.913 kb on - strandat 891.048 kb on + strand, within HGI48_RS04230at 891.049 kb on - strand, within HGI48_RS04230at 891.061 kb on + strand, within HGI48_RS04230at 891.061 kb on + strand, within HGI48_RS04230at 891.061 kb on + strand, within HGI48_RS04230at 891.062 kb on - strand, within HGI48_RS04230at 891.064 kb on + strand, within HGI48_RS04230at 891.065 kb on - strand, within HGI48_RS04230at 891.113 kb on + strand, within HGI48_RS04230at 891.130 kb on + strand, within HGI48_RS04230at 891.130 kb on + strand, within HGI48_RS04230at 891.130 kb on + strand, within HGI48_RS04230at 891.130 kb on + strand, within HGI48_RS04230at 891.130 kb on + strand, within HGI48_RS04230at 891.131 kb on - strand, within HGI48_RS04230at 891.144 kb on + strandat 891.144 kb on + strandat 891.145 kb on - strandat 891.171 kb on + strandat 891.214 kb on + strandat 891.215 kb on - strandat 891.215 kb on - strandat 891.656 kb on + strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.657 kb on - strandat 891.668 kb on + strandat 891.685 kb on + strandat 891.686 kb on - strandat 891.686 kb on - strandat 891.729 kb on - strandat 891.756 kb on + strandat 891.858 kb on + strandat 891.859 kb on - strandat 891.888 kb on + strandat 891.902 kb on - strandat 891.911 kb on + strandat 891.939 kb on - strandat 892.108 kb on + strandat 892.108 kb on + strandat 892.108 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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889,183 + +0.5
889,246 + HGI48_RS04225 0.17 +0.7
889,253 + HGI48_RS04225 0.19 -0.1
889,254 - +0.5
889,254 - HGI48_RS04225 0.19 -0.5
889,254 - HGI48_RS04225 0.19 -1.5
889,254 - HGI48_RS04225 0.19 -2.4
889,322 - -0.1
889,418 + -0.5
889,419 - HGI48_RS04225 0.74 -0.1
889,448 - HGI48_RS04225 0.83 -2.1
889,468 + -0.1
889,503 + -1.9
889,504 - -0.1
889,533 - -2.2
889,535 + -0.5
889,614 + -0.0
889,622 - -0.1
889,770 - -1.1
889,873 + -0.5
889,979 - +0.2
889,999 + +1.0
889,999 + -1.1
889,999 + -0.2
890,004 + +0.0
890,004 + -0.5
890,004 + -0.5
890,005 - +0.5
890,007 + +1.3
890,010 + +0.1
890,010 + -2.9
890,011 - -1.9
890,011 - -1.1
890,011 - -1.1
890,013 + +0.8
890,014 - +0.5
890,050 + +0.0
890,055 + -0.2
890,055 + -1.5
890,114 + -0.0
890,114 + +0.1
890,114 + -0.2
890,114 + -0.5
890,115 - -2.5
890,123 + -2.1
890,350 - HGI48_RS04230 0.23 +0.1
890,350 - HGI48_RS04230 0.23 -1.4
890,391 + HGI48_RS04230 0.26 +1.3
890,392 - HGI48_RS04230 0.26 +0.2
890,392 - HGI48_RS04230 0.26 -0.4
890,519 + HGI48_RS04230 0.37 -0.9
890,519 + HGI48_RS04230 0.37 +0.0
890,519 + HGI48_RS04230 0.37 -0.8
890,519 + HGI48_RS04230 0.37 +0.4
890,519 + HGI48_RS04230 0.37 +0.5
890,519 + +2.2
890,519 + HGI48_RS04230 0.37 +0.8
890,520 - HGI48_RS04230 0.37 -2.4
890,520 - HGI48_RS04230 0.37 -0.9
890,520 - HGI48_RS04230 0.37 -0.1
890,523 + HGI48_RS04230 0.37 +0.4
890,529 + HGI48_RS04230 0.38 -0.4
890,529 + HGI48_RS04230 0.38 -0.3
890,530 - HGI48_RS04230 0.38 -0.8
890,628 - +0.5
890,628 - HGI48_RS04230 0.46 -1.0
890,657 + HGI48_RS04230 0.49 -0.1
890,657 + HGI48_RS04230 0.49 -0.3
890,657 + HGI48_RS04230 0.49 -0.2
890,670 + HGI48_RS04230 0.50 +1.3
890,671 - HGI48_RS04230 0.50 +0.2
890,730 - HGI48_RS04230 0.55 -0.4
890,766 + HGI48_RS04230 0.58 +0.2
890,766 + HGI48_RS04230 0.58 -0.1
890,767 - HGI48_RS04230 0.58 +0.3
890,772 + HGI48_RS04230 0.58 -0.7
890,772 + HGI48_RS04230 0.58 -0.4
890,785 + HGI48_RS04230 0.60 -0.2
890,785 + HGI48_RS04230 0.60 +0.3
890,786 - HGI48_RS04230 0.60 -0.9
890,786 - HGI48_RS04230 0.60 +0.5
890,843 - HGI48_RS04230 0.64 -0.4
890,843 - HGI48_RS04230 0.64 +0.5
890,872 - HGI48_RS04230 0.67 -0.5
890,911 - +0.5
890,912 + -1.1
890,912 + HGI48_RS04230 0.70 -0.5
890,913 - -0.5
891,048 + HGI48_RS04230 0.82 +0.5
891,049 - HGI48_RS04230 0.82 +0.2
891,061 + HGI48_RS04230 0.83 -0.1
891,061 + HGI48_RS04230 0.83 -0.8
891,061 + HGI48_RS04230 0.83 -1.5
891,062 - HGI48_RS04230 0.83 +0.3
891,064 + HGI48_RS04230 0.83 +0.6
891,065 - HGI48_RS04230 0.83 +1.3
891,113 + HGI48_RS04230 0.87 +0.1
891,130 + HGI48_RS04230 0.89 +0.9
891,130 + HGI48_RS04230 0.89 -1.0
891,130 + HGI48_RS04230 0.89 -1.0
891,130 + HGI48_RS04230 0.89 +0.2
891,130 + HGI48_RS04230 0.89 -0.5
891,131 - HGI48_RS04230 0.89 -1.4
891,144 + +0.2
891,144 + +1.3
891,145 - +0.3
891,171 + +0.2
891,214 + -2.5
891,215 - -1.8
891,215 - -0.5
891,656 + +0.2
891,657 - -1.0
891,657 - +0.5
891,657 - -0.3
891,657 - +1.3
891,668 + -0.2
891,685 + -1.4
891,686 - -1.9
891,686 - +1.5
891,729 - +0.4
891,756 + -0.5
891,858 + +1.8
891,859 - +0.6
891,888 + +0.9
891,902 - -0.5
891,911 + -0.4
891,939 - -0.5
892,108 + -1.1
892,108 + +1.0
892,108 + +0.8

Or see this region's nucleotide sequence