Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03995 and HGI48_RS04000 are separated by 106 nucleotides HGI48_RS04000 and HGI48_RS04005 are separated by 28 nucleotides HGI48_RS04005 and HGI48_RS04010 are separated by 95 nucleotides HGI48_RS04010 and HGI48_RS04015 are separated by 191 nucleotides
HGI48_RS03995: HGI48_RS03995 - pirin family protein, at 846,871 to 847,728
_RS03995
HGI48_RS04000: HGI48_RS04000 - DoxX family protein, at 847,835 to 848,245
_RS04000
HGI48_RS04005: HGI48_RS04005 - FMN-dependent NADH-azoreductase, at 848,274 to 848,882
_RS04005
HGI48_RS04010: HGI48_RS04010 - helix-turn-helix transcriptional regulator, at 848,978 to 849,385
_RS04010
HGI48_RS04015: HGI48_RS04015 - relaxase/mobilization nuclease and DUF3363 domain-containing protein, at 849,577 to 851,571
_RS04015
Position (kb) 848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 847.372 kb on + strand, within HGI48_RS03995 at 847.372 kb on + strand, within HGI48_RS03995 at 847.372 kb on + strand, within HGI48_RS03995 at 847.372 kb on + strand, within HGI48_RS03995 at 847.372 kb on + strand, within HGI48_RS03995 at 847.372 kb on + strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.373 kb on - strand, within HGI48_RS03995 at 847.511 kb on + strand, within HGI48_RS03995 at 847.511 kb on + strand, within HGI48_RS03995 at 847.511 kb on + strand at 847.511 kb on + strand, within HGI48_RS03995 at 847.511 kb on + strand at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand, within HGI48_RS03995 at 847.512 kb on - strand at 848.105 kb on - strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.248 kb on + strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.249 kb on - strand at 848.410 kb on + strand, within HGI48_RS04005 at 848.410 kb on + strand, within HGI48_RS04005 at 848.410 kb on + strand, within HGI48_RS04005 at 848.410 kb on + strand, within HGI48_RS04005 at 848.410 kb on + strand, within HGI48_RS04005 at 848.410 kb on + strand, within HGI48_RS04005 at 848.411 kb on - strand, within HGI48_RS04005 at 848.455 kb on + strand, within HGI48_RS04005 at 848.455 kb on + strand, within HGI48_RS04005 at 848.455 kb on + strand, within HGI48_RS04005 at 848.456 kb on - strand, within HGI48_RS04005 at 848.456 kb on - strand, within HGI48_RS04005 at 848.456 kb on - strand, within HGI48_RS04005 at 848.458 kb on - strand, within HGI48_RS04005 at 848.458 kb on - strand, within HGI48_RS04005 at 848.527 kb on + strand, within HGI48_RS04005 at 848.573 kb on + strand, within HGI48_RS04005 at 848.573 kb on + strand, within HGI48_RS04005 at 848.574 kb on - strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.599 kb on + strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.600 kb on - strand, within HGI48_RS04005 at 848.715 kb on + strand, within HGI48_RS04005 at 848.882 kb on + strand at 848.882 kb on + strand at 848.883 kb on - strand at 848.901 kb on - strand at 848.952 kb on - strand at 848.960 kb on + strand at 848.960 kb on + strand at 848.961 kb on - strand at 848.974 kb on + strand at 848.975 kb on - strand at 848.985 kb on + strand at 848.985 kb on + strand at 848.986 kb on - strand at 848.986 kb on - strand at 848.986 kb on - strand at 848.986 kb on - strand at 849.030 kb on + strand, within HGI48_RS04010 at 849.030 kb on + strand, within HGI48_RS04010 at 849.073 kb on + strand, within HGI48_RS04010 at 849.138 kb on + strand at 849.148 kb on + strand, within HGI48_RS04010 at 849.148 kb on + strand, within HGI48_RS04010 at 849.148 kb on + strand at 849.148 kb on + strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.149 kb on - strand, within HGI48_RS04010 at 849.190 kb on + strand, within HGI48_RS04010 at 849.215 kb on - strand, within HGI48_RS04010 at 849.249 kb on + strand, within HGI48_RS04010 at 849.250 kb on - strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.304 kb on + strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.305 kb on - strand, within HGI48_RS04010 at 849.349 kb on + strand at 849.352 kb on + strand at 849.352 kb on + strand at 849.353 kb on - strand at 849.353 kb on - strand at 849.383 kb on + strand at 849.383 kb on + strand at 849.383 kb on + strand at 849.384 kb on - strand at 849.384 kb on - strand at 849.409 kb on + strand at 849.426 kb on + strand at 849.426 kb on + strand at 849.427 kb on - strand at 849.442 kb on + strand at 849.443 kb on - strand at 849.467 kb on + strand at 849.467 kb on + strand at 849.468 kb on - strand at 849.468 kb on - strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.485 kb on + strand at 849.486 kb on - strand at 849.486 kb on - strand at 849.515 kb on + strand at 849.516 kb on - strand at 849.516 kb on - strand at 849.516 kb on - strand at 849.559 kb on - strand at 849.572 kb on + strand at 849.572 kb on + strand at 849.573 kb on - strand at 849.607 kb on + strand at 849.607 kb on + strand at 849.608 kb on - strand at 849.608 kb on - strand at 849.865 kb on + strand, within HGI48_RS04015
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 847,372 + HGI48_RS03995 0.58 +0.8 847,372 + HGI48_RS03995 0.58 +1.2 847,372 + HGI48_RS03995 0.58 +0.5 847,372 + HGI48_RS03995 0.58 +0.2 847,372 + HGI48_RS03995 0.58 -0.5 847,372 + HGI48_RS03995 0.58 -0.4 847,373 - HGI48_RS03995 0.59 -1.5 847,373 - HGI48_RS03995 0.59 -1.1 847,373 - HGI48_RS03995 0.59 -0.3 847,373 - HGI48_RS03995 0.59 -0.2 847,373 - HGI48_RS03995 0.59 +0.0 847,373 - HGI48_RS03995 0.59 +0.1 847,511 + HGI48_RS03995 0.75 -1.5 847,511 + HGI48_RS03995 0.75 +0.2 847,511 + +0.5 847,511 + HGI48_RS03995 0.75 +0.6 847,511 + +0.5 847,512 - HGI48_RS03995 0.75 -0.0 847,512 - -1.1 847,512 - HGI48_RS03995 0.75 +0.4 847,512 - HGI48_RS03995 0.75 -0.9 847,512 - HGI48_RS03995 0.75 -0.6 847,512 - HGI48_RS03995 0.75 -0.2 847,512 - HGI48_RS03995 0.75 +1.1 847,512 - +0.5 848,105 - +1.5 848,248 + +0.9 848,248 + -0.5 848,248 + -1.1 848,248 + -1.8 848,248 + +2.1 848,248 + +0.1 848,248 + -0.1 848,248 + +1.6 848,248 + -0.9 848,248 + -0.1 848,248 + -0.7 848,248 + -1.7 848,249 - -1.5 848,249 - +1.0 848,249 - -0.1 848,249 - -0.1 848,249 - -0.1 848,249 - +0.1 848,249 - -0.3 848,410 + HGI48_RS04005 0.22 -0.5 848,410 + HGI48_RS04005 0.22 -0.9 848,410 + HGI48_RS04005 0.22 +0.7 848,410 + HGI48_RS04005 0.22 -0.3 848,410 + HGI48_RS04005 0.22 -1.3 848,410 + HGI48_RS04005 0.22 -0.2 848,411 - HGI48_RS04005 0.22 -0.0 848,455 + HGI48_RS04005 0.30 -0.9 848,455 + HGI48_RS04005 0.30 -0.8 848,455 + HGI48_RS04005 0.30 -0.4 848,456 - HGI48_RS04005 0.30 -0.2 848,456 - HGI48_RS04005 0.30 -0.3 848,456 - HGI48_RS04005 0.30 -1.3 848,458 - HGI48_RS04005 0.30 -2.1 848,458 - HGI48_RS04005 0.30 -1.5 848,527 + HGI48_RS04005 0.42 -0.1 848,573 + HGI48_RS04005 0.49 -0.5 848,573 + HGI48_RS04005 0.49 +0.5 848,574 - HGI48_RS04005 0.49 -0.5 848,599 + HGI48_RS04005 0.53 -0.1 848,599 + HGI48_RS04005 0.53 +0.1 848,599 + HGI48_RS04005 0.53 -0.3 848,599 + HGI48_RS04005 0.53 -0.4 848,599 + HGI48_RS04005 0.53 +0.5 848,600 - HGI48_RS04005 0.54 -0.3 848,600 - HGI48_RS04005 0.54 -1.1 848,600 - HGI48_RS04005 0.54 -0.2 848,600 - HGI48_RS04005 0.54 +0.1 848,715 + HGI48_RS04005 0.72 -1.1 848,882 + -0.8 848,882 + -2.1 848,883 - -0.5 848,901 - -0.9 848,952 - +0.2 848,960 + -0.4 848,960 + -1.5 848,961 - -0.6 848,974 + -0.6 848,975 - -0.5 848,985 + -0.2 848,985 + +0.1 848,986 - +1.1 848,986 - -0.5 848,986 - +1.0 848,986 - +0.5 849,030 + HGI48_RS04010 0.13 -0.3 849,030 + HGI48_RS04010 0.13 -0.8 849,073 + HGI48_RS04010 0.23 -0.5 849,138 + +1.5 849,148 + HGI48_RS04010 0.42 -0.1 849,148 + HGI48_RS04010 0.42 -0.6 849,148 + +0.5 849,148 + HGI48_RS04010 0.42 +0.5 849,149 - HGI48_RS04010 0.42 -0.1 849,149 - HGI48_RS04010 0.42 +0.1 849,149 - HGI48_RS04010 0.42 +0.2 849,190 + HGI48_RS04010 0.52 -1.9 849,215 - HGI48_RS04010 0.58 -1.5 849,249 + HGI48_RS04010 0.66 -2.3 849,250 - HGI48_RS04010 0.67 +0.7 849,304 + HGI48_RS04010 0.80 -1.5 849,304 + HGI48_RS04010 0.80 -0.5 849,304 + HGI48_RS04010 0.80 +0.9 849,305 - HGI48_RS04010 0.80 +1.3 849,305 - HGI48_RS04010 0.80 +0.1 849,305 - HGI48_RS04010 0.80 +0.1 849,305 - HGI48_RS04010 0.80 +0.7 849,349 + +0.2 849,352 + +0.8 849,352 + -0.1 849,353 - -0.4 849,353 - -1.3 849,383 + +0.2 849,383 + +0.9 849,383 + +0.5 849,384 - +0.2 849,384 - +1.1 849,409 + +0.1 849,426 + +0.9 849,426 + -2.3 849,427 - -2.9 849,442 + -1.9 849,443 - +1.2 849,467 + -1.1 849,467 + -0.4 849,468 - -0.4 849,468 - -1.1 849,485 + +0.1 849,485 + +1.3 849,485 + +0.1 849,486 - -0.8 849,486 - -0.9 849,515 + +0.3 849,516 - -0.5 849,516 - +0.8 849,516 - +0.5 849,559 - -0.8 849,572 + +0.9 849,572 + -0.8 849,573 - -0.7 849,607 + -0.5 849,607 + -0.2 849,608 - -0.4 849,608 - +0.5 849,865 + HGI48_RS04015 0.14 +0.2
Or see this region's nucleotide sequence