Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03610 and HGI48_RS03615 overlap by 8 nucleotides HGI48_RS03615 and HGI48_RS03620 are separated by 42 nucleotides HGI48_RS03620 and HGI48_RS03625 are separated by 340 nucleotides
HGI48_RS03610: HGI48_RS03610 - ABC transporter permease, at 764,890 to 765,795
_RS03610
HGI48_RS03615: HGI48_RS03615 - ABC transporter ATP-binding protein, at 765,788 to 766,663
_RS03615
HGI48_RS03620: HGI48_RS03620 - ABC transporter ATP-binding protein, at 766,706 to 767,479
_RS03620
HGI48_RS03625: HGI48_RS03625 - AI-2E family transporter, at 767,820 to 768,830
_RS03625
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 765.764 kb on + strand at 765.764 kb on + strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.765 kb on - strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.793 kb on + strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.794 kb on - strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.801 kb on + strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.802 kb on - strand at 765.817 kb on + strand at 765.817 kb on + strand at 766.124 kb on + strand at 766.124 kb on + strand, within HGI48_RS03615 at 766.124 kb on + strand, within HGI48_RS03615 at 766.125 kb on - strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.172 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.312 kb on + strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.313 kb on - strand, within HGI48_RS03615 at 766.333 kb on - strand, within HGI48_RS03615 at 766.453 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand, within HGI48_RS03615 at 766.508 kb on + strand at 766.509 kb on - strand, within HGI48_RS03615 at 766.509 kb on - strand, within HGI48_RS03615 at 766.654 kb on + strand at 766.672 kb on + strand at 766.672 kb on + strand at 766.673 kb on - strand at 766.687 kb on - strand at 766.721 kb on - strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.769 kb on + strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.770 kb on - strand at 766.871 kb on - strand, within HGI48_RS03620 at 766.871 kb on - strand at 766.890 kb on + strand, within HGI48_RS03620 at 766.890 kb on + strand, within HGI48_RS03620 at 766.891 kb on - strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.025 kb on + strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.026 kb on - strand, within HGI48_RS03620 at 767.068 kb on - strand, within HGI48_RS03620 at 767.256 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.274 kb on + strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.275 kb on - strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.279 kb on + strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand, within HGI48_RS03620 at 767.280 kb on - strand at 767.326 kb on + strand, within HGI48_RS03620 at 767.353 kb on + strand, within HGI48_RS03620 at 767.382 kb on + strand, within HGI48_RS03620 at 767.409 kb on - strand at 767.409 kb on - strand at 767.410 kb on + strand at 767.410 kb on + strand at 767.411 kb on - strand at 767.411 kb on - strand at 767.442 kb on - strand at 767.477 kb on + strand at 767.478 kb on - strand at 767.478 kb on - strand at 767.506 kb on + strand at 767.506 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.635 kb on + strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.636 kb on - strand at 767.640 kb on - strand at 767.640 kb on - strand at 767.646 kb on + strand at 767.647 kb on - strand at 767.647 kb on - strand at 767.666 kb on + strand at 767.667 kb on - strand at 767.690 kb on - strand at 767.698 kb on - strand at 767.715 kb on + strand at 767.716 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.797 kb on - strand at 767.802 kb on + strand at 767.802 kb on + strand at 767.819 kb on + strand at 767.819 kb on + strand at 767.819 kb on + strand at 767.820 kb on - strand at 767.820 kb on - strand at 767.820 kb on - strand at 767.868 kb on - strand at 767.868 kb on - strand at 767.918 kb on + strand at 767.937 kb on + strand, within HGI48_RS03625 at 767.937 kb on + strand, within HGI48_RS03625 at 767.938 kb on - strand, within HGI48_RS03625 at 767.949 kb on - strand, within HGI48_RS03625 at 767.953 kb on + strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.153 kb on - strand, within HGI48_RS03625 at 768.159 kb on + strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.160 kb on - strand, within HGI48_RS03625 at 768.171 kb on + strand, within HGI48_RS03625 at 768.188 kb on - strand, within HGI48_RS03625 at 768.293 kb on + strand, within HGI48_RS03625 at 768.294 kb on - strand, within HGI48_RS03625 at 768.294 kb on - strand, within HGI48_RS03625 at 768.321 kb on + strand, within HGI48_RS03625 at 768.321 kb on + strand at 768.321 kb on + strand, within HGI48_RS03625 at 768.322 kb on - strand at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.322 kb on - strand, within HGI48_RS03625 at 768.323 kb on + strand, within HGI48_RS03625 at 768.323 kb on + strand, within HGI48_RS03625 at 768.324 kb on - strand, within HGI48_RS03625 at 768.324 kb on - strand at 768.324 kb on - strand, within HGI48_RS03625 at 768.340 kb on + strand, within HGI48_RS03625 at 768.439 kb on + strand at 768.464 kb on + strand, within HGI48_RS03625
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,764 + +0.8 765,764 + +1.5 765,765 - -0.0 765,765 - -1.1 765,765 - -1.2 765,765 - -0.1 765,793 + +0.0 765,793 + +0.3 765,793 + -0.0 765,794 - +0.5 765,794 - -0.7 765,794 - +2.0 765,801 + -2.1 765,801 + +0.5 765,801 + +1.2 765,801 + -1.8 765,801 + +1.7 765,801 + -0.2 765,801 + +1.8 765,801 + +0.1 765,802 - -1.1 765,802 - -0.1 765,802 - +0.5 765,802 - -1.3 765,802 - -0.1 765,802 - -0.0 765,802 - +0.5 765,817 + -0.6 765,817 + -0.1 766,124 + +1.5 766,124 + HGI48_RS03615 0.38 -2.5 766,124 + HGI48_RS03615 0.38 +1.4 766,125 - HGI48_RS03615 0.38 +1.5 766,172 + HGI48_RS03615 0.44 -0.5 766,172 + HGI48_RS03615 0.44 +0.5 766,312 + HGI48_RS03615 0.60 -2.1 766,312 + HGI48_RS03615 0.60 +0.3 766,312 + HGI48_RS03615 0.60 +0.5 766,312 + HGI48_RS03615 0.60 -0.8 766,313 - HGI48_RS03615 0.60 +0.4 766,313 - HGI48_RS03615 0.60 -1.5 766,333 - HGI48_RS03615 0.62 +0.5 766,453 + HGI48_RS03615 0.76 +0.8 766,508 + HGI48_RS03615 0.82 -0.4 766,508 + +1.2 766,509 - HGI48_RS03615 0.82 +0.6 766,509 - HGI48_RS03615 0.82 -2.7 766,654 + +0.2 766,672 + +0.7 766,672 + -0.5 766,673 - +0.5 766,687 - +1.3 766,721 - -0.4 766,769 + -0.1 766,769 + +0.2 766,769 + -2.2 766,769 + +0.2 766,769 + +0.8 766,769 + -0.3 766,770 - +0.8 766,770 - -0.0 766,770 - -1.1 766,770 - +0.9 766,770 - -1.8 766,770 - -1.0 766,770 - -1.1 766,770 - -1.5 766,871 - HGI48_RS03620 0.21 -1.5 766,871 - -1.1 766,890 + HGI48_RS03620 0.24 +0.8 766,890 + HGI48_RS03620 0.24 +0.3 766,891 - HGI48_RS03620 0.24 +0.5 767,025 + HGI48_RS03620 0.41 +1.0 767,025 + HGI48_RS03620 0.41 -0.5 767,026 - HGI48_RS03620 0.41 -1.9 767,026 - HGI48_RS03620 0.41 -0.1 767,068 - HGI48_RS03620 0.47 -0.5 767,256 + HGI48_RS03620 0.71 -0.2 767,274 + HGI48_RS03620 0.73 +0.2 767,274 + HGI48_RS03620 0.73 -0.3 767,275 - HGI48_RS03620 0.74 -0.1 767,275 - HGI48_RS03620 0.74 -1.3 767,279 + HGI48_RS03620 0.74 -0.3 767,279 + HGI48_RS03620 0.74 -0.3 767,279 + HGI48_RS03620 0.74 +0.5 767,279 + HGI48_RS03620 0.74 +0.3 767,280 - HGI48_RS03620 0.74 +0.1 767,280 - HGI48_RS03620 0.74 +1.5 767,280 - HGI48_RS03620 0.74 +0.3 767,280 - +2.5 767,326 + HGI48_RS03620 0.80 -0.5 767,353 + HGI48_RS03620 0.84 +0.2 767,382 + HGI48_RS03620 0.87 -0.8 767,409 - +0.1 767,409 - +0.3 767,410 + -1.5 767,410 + +0.5 767,411 - -0.8 767,411 - -1.0 767,442 - -1.0 767,477 + -1.5 767,478 - +2.8 767,478 - +1.0 767,506 + -0.6 767,506 + -0.1 767,635 + -0.1 767,635 + -0.5 767,635 + -2.3 767,635 + +0.7 767,635 + +0.1 767,635 + -0.5 767,636 - +0.1 767,636 - +0.1 767,636 - -1.5 767,636 - -0.5 767,636 - +1.6 767,636 - +0.7 767,636 - -0.8 767,636 - -0.2 767,640 - -0.8 767,640 - -1.3 767,646 + -0.0 767,647 - -1.8 767,647 - +0.0 767,666 + -0.1 767,667 - +0.7 767,690 - -0.1 767,698 - -1.1 767,715 + +0.5 767,716 - +0.3 767,797 - -0.5 767,797 - -0.1 767,797 - +3.3 767,797 - -3.1 767,797 - +0.8 767,802 + +0.9 767,802 + -0.8 767,819 + +0.1 767,819 + +0.3 767,819 + -0.5 767,820 - -0.8 767,820 - -0.5 767,820 - +0.5 767,868 - -2.1 767,868 - +0.1 767,918 + -0.2 767,937 + HGI48_RS03625 0.12 +1.5 767,937 + HGI48_RS03625 0.12 -0.0 767,938 - HGI48_RS03625 0.12 -0.8 767,949 - HGI48_RS03625 0.13 -2.1 767,953 + HGI48_RS03625 0.13 +0.0 768,153 - HGI48_RS03625 0.33 -0.9 768,153 - HGI48_RS03625 0.33 -0.1 768,153 - HGI48_RS03625 0.33 -1.5 768,159 + HGI48_RS03625 0.34 +1.5 768,160 - HGI48_RS03625 0.34 +0.2 768,160 - HGI48_RS03625 0.34 -1.5 768,160 - HGI48_RS03625 0.34 +0.6 768,171 + HGI48_RS03625 0.35 +0.8 768,188 - HGI48_RS03625 0.36 -0.9 768,293 + HGI48_RS03625 0.47 +0.8 768,294 - HGI48_RS03625 0.47 -0.3 768,294 - HGI48_RS03625 0.47 +1.2 768,321 + HGI48_RS03625 0.50 +0.0 768,321 + +0.5 768,321 + HGI48_RS03625 0.50 +1.6 768,322 - +1.9 768,322 - HGI48_RS03625 0.50 +0.5 768,322 - HGI48_RS03625 0.50 -0.4 768,322 - HGI48_RS03625 0.50 -0.1 768,322 - HGI48_RS03625 0.50 -0.1 768,322 - HGI48_RS03625 0.50 -0.5 768,322 - HGI48_RS03625 0.50 -0.3 768,323 + HGI48_RS03625 0.50 +1.1 768,323 + HGI48_RS03625 0.50 -0.2 768,324 - HGI48_RS03625 0.50 +0.4 768,324 - +0.5 768,324 - HGI48_RS03625 0.50 +0.5 768,340 + HGI48_RS03625 0.51 -0.2 768,439 + -0.1 768,464 + HGI48_RS03625 0.64 -1.1
Or see this region's nucleotide sequence