Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03590 and HGI48_RS03595 are separated by 853 nucleotides HGI48_RS03595 and HGI48_RS03600 are separated by 80 nucleotides
HGI48_RS03590: HGI48_RS03590 - hypothetical protein, at 759,853 to 760,047
_RS03590
HGI48_RS03595: HGI48_RS03595 - enolase, at 760,901 to 762,055
_RS03595
HGI48_RS03600: HGI48_RS03600 - ABC transporter substrate-binding protein, at 762,136 to 763,746
_RS03600
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -2
-1
0
1 at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.015 kb on + strand, within HGI48_RS03590 at 760.043 kb on + strand at 760.043 kb on + strand at 760.044 kb on - strand at 760.044 kb on - strand at 760.050 kb on + strand at 760.050 kb on + strand at 760.059 kb on + strand at 760.062 kb on + strand at 760.063 kb on - strand at 760.063 kb on - strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.124 kb on + strand at 760.124 kb on + strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.135 kb on + strand at 760.136 kb on - strand at 760.182 kb on + strand at 760.183 kb on - strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.191 kb on - strand at 760.191 kb on - strand at 760.260 kb on + strand at 760.287 kb on + strand at 760.288 kb on - strand at 760.288 kb on - strand at 760.296 kb on + strand at 760.296 kb on + strand at 760.297 kb on - strand at 760.298 kb on + strand at 760.298 kb on + strand at 760.298 kb on + strand at 760.298 kb on + strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.299 kb on - strand at 760.330 kb on - strand at 760.334 kb on - strand at 760.415 kb on + strand at 760.525 kb on + strand at 760.526 kb on - strand at 760.577 kb on + strand at 760.602 kb on - strand at 760.772 kb on - strand at 760.808 kb on - strand at 760.808 kb on - strand at 760.816 kb on - strand at 760.822 kb on + strand at 760.822 kb on + strand at 760.822 kb on + strand at 760.822 kb on + strand at 760.823 kb on - strand at 760.823 kb on - strand at 760.823 kb on - strand at 760.824 kb on + strand at 760.825 kb on - strand at 760.847 kb on + strand at 760.847 kb on + strand at 760.847 kb on + strand at 760.848 kb on - strand at 760.848 kb on - strand at 760.848 kb on - strand at 760.848 kb on - strand at 760.853 kb on - strand at 760.869 kb on + strand at 760.870 kb on - strand at 760.870 kb on - strand at 760.878 kb on + strand at 760.879 kb on - strand at 760.879 kb on - strand at 760.879 kb on - strand at 760.882 kb on + strand at 760.883 kb on - strand at 760.883 kb on - strand at 760.895 kb on - strand at 760.909 kb on - strand at 760.909 kb on - strand at 761.046 kb on - strand, within HGI48_RS03595 at 762.013 kb on + strand at 762.037 kb on + strand at 762.037 kb on + strand at 762.135 kb on - strand at 762.152 kb on + strand at 762.152 kb on + strand at 762.152 kb on + strand at 762.152 kb on + strand at 762.152 kb on + strand at 762.153 kb on - strand at 762.184 kb on - strand at 762.322 kb on + strand, within HGI48_RS03600 at 762.323 kb on - strand, within HGI48_RS03600 at 762.336 kb on - strand, within HGI48_RS03600 at 762.336 kb on - strand, within HGI48_RS03600 at 762.336 kb on - strand, within HGI48_RS03600 at 762.396 kb on - strand, within HGI48_RS03600 at 762.541 kb on + strand at 762.636 kb on + strand, within HGI48_RS03600 at 762.636 kb on + strand, within HGI48_RS03600 at 762.636 kb on + strand, within HGI48_RS03600 at 762.637 kb on - strand, within HGI48_RS03600 at 762.643 kb on + strand, within HGI48_RS03600 at 762.644 kb on - strand, within HGI48_RS03600 at 762.644 kb on - strand, within HGI48_RS03600 at 762.842 kb on + strand, within HGI48_RS03600 at 762.843 kb on - strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.864 kb on + strand, within HGI48_RS03600 at 762.865 kb on - strand, within HGI48_RS03600 at 762.865 kb on - strand, within HGI48_RS03600 at 762.964 kb on - strand, within HGI48_RS03600 at 762.964 kb on - strand, within HGI48_RS03600 at 763.003 kb on + strand, within HGI48_RS03600 at 763.003 kb on + strand, within HGI48_RS03600 at 763.004 kb on - strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.006 kb on + strand, within HGI48_RS03600 at 763.007 kb on - strand, within HGI48_RS03600 at 763.007 kb on - strand, within HGI48_RS03600 at 763.033 kb on + strand, within HGI48_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 759,985 + HGI48_RS03590 0.68 -2.3 759,985 + HGI48_RS03590 0.68 +1.3 759,985 + HGI48_RS03590 0.68 -0.3 759,986 - HGI48_RS03590 0.68 -2.3 759,986 - +1.5 759,986 - HGI48_RS03590 0.68 -0.2 759,986 - HGI48_RS03590 0.68 -0.3 759,986 - HGI48_RS03590 0.68 -0.5 760,000 - HGI48_RS03590 0.75 -0.2 760,000 - HGI48_RS03590 0.75 +0.6 760,015 + HGI48_RS03590 0.83 +0.2 760,043 + -1.0 760,043 + +1.0 760,044 - +0.4 760,044 - -0.4 760,050 + -0.6 760,050 + -0.1 760,059 + -2.1 760,062 + -1.1 760,063 - +0.5 760,063 - -0.3 760,117 + -0.7 760,117 + +0.5 760,117 + +0.2 760,118 - -0.7 760,118 - +0.9 760,118 - -0.3 760,118 - -0.7 760,118 - -0.2 760,118 - -0.5 760,120 - -0.5 760,120 - -0.1 760,120 - +0.8 760,120 - -0.1 760,124 + -1.8 760,124 + -1.0 760,125 - -0.3 760,125 - +0.9 760,125 - +0.1 760,125 - -2.1 760,135 + -0.5 760,136 - -0.4 760,182 + +0.0 760,183 - -1.1 760,190 + -0.1 760,190 + -1.2 760,190 + +1.3 760,191 - -1.8 760,191 - +0.3 760,260 + +0.5 760,287 + -2.1 760,288 - -1.5 760,288 - -0.1 760,296 + +0.9 760,296 + +0.8 760,297 - -0.8 760,298 + +0.1 760,298 + -2.1 760,298 + +0.5 760,298 + +0.1 760,299 - -0.7 760,299 - +0.8 760,299 - -0.3 760,299 - -0.2 760,299 - +0.5 760,299 - +1.2 760,299 - +1.1 760,330 - -1.2 760,334 - +0.3 760,415 + +0.3 760,525 + -0.2 760,526 - -0.2 760,577 + -0.2 760,602 - -0.2 760,772 - -0.1 760,808 - +1.7 760,808 - -0.7 760,816 - +0.5 760,822 + +0.4 760,822 + -0.0 760,822 + +0.3 760,822 + -0.7 760,823 - -1.5 760,823 - -0.6 760,823 - +0.5 760,824 + +0.8 760,825 - -0.7 760,847 + +0.5 760,847 + -0.0 760,847 + -0.8 760,848 - -0.5 760,848 - +0.2 760,848 - +0.5 760,848 - +1.2 760,853 - -1.5 760,869 + +0.0 760,870 - +0.2 760,870 - -0.1 760,878 + -1.5 760,879 - -0.1 760,879 - -0.0 760,879 - +0.0 760,882 + -2.1 760,883 - -2.7 760,883 - +0.2 760,895 - -0.8 760,909 - +0.8 760,909 - +1.1 761,046 - HGI48_RS03595 0.13 -0.3 762,013 + +1.1 762,037 + -0.2 762,037 + +0.5 762,135 - +1.2 762,152 + +0.5 762,152 + +0.2 762,152 + -0.8 762,152 + -1.1 762,152 + -2.1 762,153 - -0.6 762,184 - -0.4 762,322 + HGI48_RS03600 0.12 -2.3 762,323 - HGI48_RS03600 0.12 -1.5 762,336 - HGI48_RS03600 0.12 -0.1 762,336 - HGI48_RS03600 0.12 -0.3 762,336 - HGI48_RS03600 0.12 -1.8 762,396 - HGI48_RS03600 0.16 -1.5 762,541 + +1.1 762,636 + HGI48_RS03600 0.31 -0.5 762,636 + HGI48_RS03600 0.31 -1.8 762,636 + HGI48_RS03600 0.31 +0.3 762,637 - HGI48_RS03600 0.31 -1.0 762,643 + HGI48_RS03600 0.31 -1.1 762,644 - HGI48_RS03600 0.32 +1.2 762,644 - HGI48_RS03600 0.32 +1.1 762,842 + HGI48_RS03600 0.44 -0.8 762,843 - HGI48_RS03600 0.44 -0.1 762,864 + HGI48_RS03600 0.45 -0.3 762,864 + HGI48_RS03600 0.45 +0.1 762,864 + HGI48_RS03600 0.45 -0.2 762,865 - HGI48_RS03600 0.45 +0.1 762,865 - HGI48_RS03600 0.45 -0.8 762,964 - HGI48_RS03600 0.51 -1.7 762,964 - HGI48_RS03600 0.51 -0.0 763,003 + HGI48_RS03600 0.54 +0.1 763,003 + HGI48_RS03600 0.54 -0.2 763,004 - HGI48_RS03600 0.54 +0.4 763,006 + HGI48_RS03600 0.54 -0.1 763,006 + HGI48_RS03600 0.54 -0.1 763,006 + HGI48_RS03600 0.54 -1.4 763,006 + HGI48_RS03600 0.54 -1.5 763,006 + HGI48_RS03600 0.54 +0.5 763,006 + HGI48_RS03600 0.54 -0.3 763,006 + HGI48_RS03600 0.54 +0.2 763,007 - HGI48_RS03600 0.54 +0.0 763,007 - HGI48_RS03600 0.54 -1.5 763,033 + HGI48_RS03600 0.56 +0.2
Or see this region's nucleotide sequence