Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03580 and HGI48_RS03585 are separated by 763 nucleotides HGI48_RS03585 and HGI48_RS03590 are separated by 648 nucleotides
HGI48_RS03580: HGI48_RS03580 - acetate--CoA ligase, at 756,087 to 758,048
_RS03580
HGI48_RS03585: HGI48_RS03585 - hypothetical protein, at 758,812 to 759,204
_RS03585
HGI48_RS03590: HGI48_RS03590 - hypothetical protein, at 759,853 to 760,047
_RS03590
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 757.824 kb on + strand, within HGI48_RS03580 at 757.824 kb on + strand, within HGI48_RS03580 at 757.824 kb on + strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand, within HGI48_RS03580 at 757.825 kb on - strand at 757.825 kb on - strand, within HGI48_RS03580 at 757.850 kb on + strand, within HGI48_RS03580 at 757.940 kb on + strand at 757.941 kb on - strand at 757.953 kb on + strand at 757.953 kb on + strand at 757.966 kb on + strand at 757.978 kb on + strand at 757.978 kb on + strand at 757.978 kb on + strand at 757.979 kb on - strand at 757.979 kb on - strand at 758.024 kb on + strand at 758.024 kb on + strand at 758.024 kb on + strand at 758.025 kb on - strand at 758.033 kb on + strand at 758.034 kb on - strand at 758.034 kb on - strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.036 kb on + strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.037 kb on - strand at 758.039 kb on - strand at 758.074 kb on + strand at 758.074 kb on + strand at 758.078 kb on - strand at 758.096 kb on + strand at 758.097 kb on - strand at 758.175 kb on + strand at 758.175 kb on + strand at 758.195 kb on + strand at 758.195 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.207 kb on + strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.208 kb on - strand at 758.241 kb on + strand at 758.284 kb on + strand at 758.284 kb on + strand at 758.284 kb on + strand at 758.301 kb on + strand at 758.302 kb on - strand at 758.332 kb on + strand at 758.332 kb on + strand at 758.336 kb on + strand at 758.343 kb on - strand at 758.364 kb on + strand at 758.365 kb on - strand at 758.392 kb on + strand at 758.392 kb on + strand at 758.393 kb on - strand at 758.424 kb on + strand at 758.424 kb on + strand at 758.425 kb on - strand at 758.425 kb on - strand at 758.425 kb on - strand at 758.426 kb on + strand at 758.426 kb on + strand at 758.427 kb on - strand at 758.427 kb on - strand at 758.427 kb on - strand at 758.457 kb on + strand at 758.457 kb on + strand at 758.457 kb on + strand at 758.458 kb on - strand at 758.458 kb on - strand at 758.458 kb on - strand at 758.523 kb on + strand at 758.531 kb on + strand at 758.535 kb on + strand at 758.536 kb on - strand at 758.573 kb on - strand at 758.578 kb on - strand at 758.587 kb on + strand at 758.588 kb on - strand at 758.588 kb on - strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.590 kb on + strand at 758.594 kb on + strand at 758.594 kb on + strand at 758.595 kb on - strand at 758.595 kb on - strand at 758.612 kb on + strand at 758.613 kb on - strand at 758.613 kb on - strand at 758.615 kb on + strand at 758.629 kb on - strand at 758.709 kb on + strand at 758.709 kb on + strand at 758.714 kb on + strand at 758.728 kb on + strand at 758.728 kb on + strand at 758.781 kb on + strand at 758.792 kb on + strand at 758.793 kb on - strand at 758.811 kb on + strand at 758.812 kb on - strand at 758.812 kb on - strand at 758.812 kb on - strand at 758.847 kb on + strand at 758.874 kb on + strand, within HGI48_RS03585 at 758.874 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.912 kb on + strand, within HGI48_RS03585 at 758.934 kb on + strand, within HGI48_RS03585 at 758.935 kb on - strand, within HGI48_RS03585 at 758.935 kb on - strand, within HGI48_RS03585 at 759.071 kb on + strand, within HGI48_RS03585 at 759.072 kb on - strand, within HGI48_RS03585 at 759.072 kb on - strand, within HGI48_RS03585 at 759.072 kb on - strand at 759.105 kb on + strand at 759.105 kb on + strand, within HGI48_RS03585 at 759.105 kb on + strand, within HGI48_RS03585 at 759.155 kb on + strand, within HGI48_RS03585 at 759.155 kb on + strand, within HGI48_RS03585 at 759.223 kb on + strand at 759.224 kb on - strand at 759.237 kb on - strand at 759.237 kb on - strand at 759.253 kb on + strand at 759.281 kb on + strand at 759.282 kb on - strand at 759.284 kb on + strand at 759.294 kb on - strand at 759.294 kb on - strand at 759.294 kb on - strand at 759.333 kb on + strand at 759.373 kb on - strand at 759.376 kb on - strand at 759.391 kb on - strand at 759.409 kb on + strand at 759.410 kb on - strand at 759.410 kb on - strand at 759.424 kb on + strand at 759.427 kb on - strand at 759.436 kb on + strand at 759.436 kb on + strand at 759.436 kb on + strand at 759.437 kb on - strand at 759.589 kb on - strand at 759.598 kb on + strand at 759.598 kb on + strand at 759.599 kb on - strand at 759.603 kb on + strand at 759.603 kb on + strand at 759.604 kb on - strand at 759.604 kb on - strand at 759.607 kb on + strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.985 kb on + strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 759.986 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.000 kb on - strand, within HGI48_RS03590 at 760.015 kb on + strand, within HGI48_RS03590 at 760.043 kb on + strand at 760.043 kb on + strand at 760.044 kb on - strand at 760.044 kb on - strand at 760.050 kb on + strand at 760.050 kb on + strand at 760.059 kb on + strand at 760.062 kb on + strand at 760.063 kb on - strand at 760.063 kb on - strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.117 kb on + strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.118 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.120 kb on - strand at 760.124 kb on + strand at 760.124 kb on + strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.125 kb on - strand at 760.135 kb on + strand at 760.136 kb on - strand at 760.182 kb on + strand at 760.183 kb on - strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.190 kb on + strand at 760.191 kb on - strand at 760.191 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 757,824 + HGI48_RS03580 0.89 +0.1 757,824 + HGI48_RS03580 0.89 -0.5 757,824 + HGI48_RS03580 0.89 -0.8 757,825 - HGI48_RS03580 0.89 -0.1 757,825 - HGI48_RS03580 0.89 -0.1 757,825 - HGI48_RS03580 0.89 +0.2 757,825 - HGI48_RS03580 0.89 -0.0 757,825 - +0.5 757,825 - HGI48_RS03580 0.89 -0.3 757,850 + HGI48_RS03580 0.90 +1.0 757,940 + -0.6 757,941 - +0.2 757,953 + +0.3 757,953 + -0.3 757,966 + +0.5 757,978 + -0.7 757,978 + -0.5 757,978 + +0.2 757,979 - -0.5 757,979 - -0.5 758,024 + -0.5 758,024 + -0.4 758,024 + -1.5 758,025 - -0.4 758,033 + -0.6 758,034 - -1.3 758,034 - +0.0 758,036 + -0.9 758,036 + -0.7 758,036 + -1.3 758,036 + +0.1 758,036 + +0.2 758,037 - +0.4 758,037 - +0.1 758,037 - +0.7 758,037 - -1.2 758,037 - -1.3 758,039 - +1.6 758,074 + -2.1 758,074 + -0.8 758,078 - +0.7 758,096 + -0.3 758,097 - +0.4 758,175 + +1.2 758,175 + -0.5 758,195 + +0.0 758,195 + +0.3 758,207 + +1.1 758,207 + +0.1 758,207 + +0.1 758,207 + -0.3 758,207 + +1.0 758,207 + -0.5 758,207 + -0.7 758,207 + +0.3 758,207 + +0.5 758,207 + -0.5 758,207 + +1.1 758,208 - -1.7 758,208 - -1.5 758,208 - -0.1 758,208 - -0.5 758,208 - +0.4 758,241 + +0.4 758,284 + -0.9 758,284 + -1.5 758,284 + +0.8 758,301 + -0.7 758,302 - +1.1 758,332 + +0.5 758,332 + -2.7 758,336 + +1.2 758,343 - -0.7 758,364 + +2.2 758,365 - -1.5 758,392 + -0.4 758,392 + +0.8 758,393 - -1.5 758,424 + -1.4 758,424 + +0.9 758,425 - +0.4 758,425 - -0.5 758,425 - -2.1 758,426 + -1.5 758,426 + +1.5 758,427 - -0.5 758,427 - +1.2 758,427 - -2.1 758,457 + -0.8 758,457 + +0.1 758,457 + +2.2 758,458 - +0.1 758,458 - -0.4 758,458 - -0.5 758,523 + -0.6 758,531 + -0.9 758,535 + +1.1 758,536 - -0.2 758,573 - -1.5 758,578 - +0.1 758,587 + +0.7 758,588 - +0.7 758,588 - +0.5 758,590 + +0.1 758,590 + +0.5 758,590 + +0.7 758,590 + +0.5 758,590 + +0.7 758,594 + +0.2 758,594 + -0.3 758,595 - -0.5 758,595 - +0.0 758,612 + +0.9 758,613 - +1.1 758,613 - -0.1 758,615 + +0.8 758,629 - -1.1 758,709 + +0.3 758,709 + -0.6 758,714 + -0.7 758,728 + -0.8 758,728 + +0.6 758,781 + -0.4 758,792 + +0.2 758,793 - -0.2 758,811 + +0.5 758,812 - -1.2 758,812 - -2.7 758,812 - -0.5 758,847 + -0.4 758,874 + HGI48_RS03585 0.16 -1.5 758,874 + HGI48_RS03585 0.16 -0.5 758,912 + HGI48_RS03585 0.25 +1.2 758,912 + HGI48_RS03585 0.25 -0.4 758,912 + HGI48_RS03585 0.25 +0.7 758,912 + HGI48_RS03585 0.25 +0.2 758,934 + HGI48_RS03585 0.31 -0.4 758,935 - HGI48_RS03585 0.31 -1.5 758,935 - HGI48_RS03585 0.31 +0.1 759,071 + HGI48_RS03585 0.66 -2.1 759,072 - HGI48_RS03585 0.66 -0.2 759,072 - HGI48_RS03585 0.66 +0.5 759,072 - +0.9 759,105 + -0.1 759,105 + HGI48_RS03585 0.75 -1.8 759,105 + HGI48_RS03585 0.75 -1.2 759,155 + HGI48_RS03585 0.87 -1.6 759,155 + HGI48_RS03585 0.87 -1.4 759,223 + -0.5 759,224 - +0.9 759,237 - +0.0 759,237 - +0.0 759,253 + +0.0 759,281 + -1.5 759,282 - -0.3 759,284 + -0.5 759,294 - -0.2 759,294 - -0.2 759,294 - -0.5 759,333 + +0.5 759,373 - +0.7 759,376 - -0.2 759,391 - +0.1 759,409 + +1.1 759,410 - +0.0 759,410 - -0.1 759,424 + -0.0 759,427 - -0.6 759,436 + -0.5 759,436 + +0.5 759,436 + +1.5 759,437 - +0.1 759,589 - +0.5 759,598 + -1.1 759,598 + -0.5 759,599 - +1.4 759,603 + -1.8 759,603 + -0.8 759,604 - +0.7 759,604 - -1.1 759,607 + +1.0 759,607 + +0.2 759,608 - -0.5 759,608 - +2.8 759,608 - +0.5 759,985 + HGI48_RS03590 0.68 -2.3 759,985 + HGI48_RS03590 0.68 +1.3 759,985 + HGI48_RS03590 0.68 -0.3 759,986 - HGI48_RS03590 0.68 -2.3 759,986 - +1.5 759,986 - HGI48_RS03590 0.68 -0.2 759,986 - HGI48_RS03590 0.68 -0.3 759,986 - HGI48_RS03590 0.68 -0.5 760,000 - HGI48_RS03590 0.75 -0.2 760,000 - HGI48_RS03590 0.75 +0.6 760,015 + HGI48_RS03590 0.83 +0.2 760,043 + -1.0 760,043 + +1.0 760,044 - +0.4 760,044 - -0.4 760,050 + -0.6 760,050 + -0.1 760,059 + -2.1 760,062 + -1.1 760,063 - +0.5 760,063 - -0.3 760,117 + -0.7 760,117 + +0.5 760,117 + +0.2 760,118 - -0.7 760,118 - +0.9 760,118 - -0.3 760,118 - -0.7 760,118 - -0.2 760,118 - -0.5 760,120 - -0.5 760,120 - -0.1 760,120 - +0.8 760,120 - -0.1 760,124 + -1.8 760,124 + -1.0 760,125 - -0.3 760,125 - +0.9 760,125 - +0.1 760,125 - -2.1 760,135 + -0.5 760,136 - -0.4 760,182 + +0.0 760,183 - -1.1 760,190 + -0.1 760,190 + -1.2 760,190 + +1.3 760,191 - -1.8 760,191 - +0.3
Or see this region's nucleotide sequence