Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03485

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03480 and HGI48_RS03485 overlap by 8 nucleotidesHGI48_RS03485 and HGI48_RS03490 are separated by 189 nucleotides HGI48_RS03480: HGI48_RS03480 - Cu(+)/Ag(+) sensor histidine kinase, at 730,443 to 731,906 _RS03480 HGI48_RS03485: HGI48_RS03485 - heavy metal response regulator transcription factor, at 731,899 to 732,579 _RS03485 HGI48_RS03490: HGI48_RS03490 - Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC, at 732,769 to 734,154 _RS03490 Position (kb) 731 732 733Strain fitness (log2 ratio) -2 -1 0 1 2at 730.925 kb on + strandat 730.925 kb on + strand, within HGI48_RS03480at 730.981 kb on + strand, within HGI48_RS03480at 730.981 kb on + strand, within HGI48_RS03480at 730.999 kb on + strand, within HGI48_RS03480at 730.999 kb on + strand, within HGI48_RS03480at 730.999 kb on + strand, within HGI48_RS03480at 730.999 kb on + strand, within HGI48_RS03480at 730.999 kb on + strand, within HGI48_RS03480at 731.187 kb on + strandat 731.187 kb on + strand, within HGI48_RS03480at 731.188 kb on - strand, within HGI48_RS03480at 731.190 kb on - strand, within HGI48_RS03480at 731.190 kb on - strand, within HGI48_RS03480at 731.261 kb on + strand, within HGI48_RS03480at 731.312 kb on + strand, within HGI48_RS03480at 731.312 kb on + strand, within HGI48_RS03480at 731.368 kb on + strand, within HGI48_RS03480at 731.369 kb on - strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.410 kb on + strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.411 kb on - strand, within HGI48_RS03480at 731.458 kb on - strand, within HGI48_RS03480at 731.458 kb on - strand, within HGI48_RS03480at 731.464 kb on + strandat 731.464 kb on + strand, within HGI48_RS03480at 731.464 kb on + strand, within HGI48_RS03480at 731.587 kb on - strand, within HGI48_RS03480at 731.725 kb on - strand, within HGI48_RS03480at 731.744 kb on + strand, within HGI48_RS03480at 731.804 kb on + strandat 731.805 kb on - strandat 731.805 kb on - strandat 731.822 kb on + strandat 731.823 kb on - strandat 731.832 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.920 kb on + strandat 731.921 kb on - strandat 731.921 kb on - strandat 731.921 kb on - strandat 731.963 kb on + strandat 731.974 kb on + strandat 731.974 kb on + strand, within HGI48_RS03485at 731.974 kb on + strand, within HGI48_RS03485at 731.975 kb on - strand, within HGI48_RS03485at 731.975 kb on - strand, within HGI48_RS03485at 731.975 kb on - strand, within HGI48_RS03485at 732.055 kb on + strand, within HGI48_RS03485at 732.055 kb on + strand, within HGI48_RS03485at 732.056 kb on - strand, within HGI48_RS03485at 732.056 kb on - strand, within HGI48_RS03485at 732.195 kb on + strand, within HGI48_RS03485at 732.196 kb on - strand, within HGI48_RS03485at 732.211 kb on + strand, within HGI48_RS03485at 732.287 kb on + strand, within HGI48_RS03485at 732.288 kb on - strand, within HGI48_RS03485at 732.288 kb on - strand, within HGI48_RS03485at 732.333 kb on + strand, within HGI48_RS03485at 732.350 kb on - strand, within HGI48_RS03485at 732.350 kb on - strand, within HGI48_RS03485at 732.350 kb on - strand, within HGI48_RS03485at 732.352 kb on + strand, within HGI48_RS03485at 732.352 kb on + strand, within HGI48_RS03485at 732.353 kb on - strand, within HGI48_RS03485at 732.378 kb on + strand, within HGI48_RS03485at 732.391 kb on + strand, within HGI48_RS03485at 732.391 kb on + strand, within HGI48_RS03485at 732.391 kb on + strand, within HGI48_RS03485at 732.392 kb on - strand, within HGI48_RS03485at 732.392 kb on - strand, within HGI48_RS03485at 732.392 kb on - strand, within HGI48_RS03485at 732.393 kb on + strand, within HGI48_RS03485at 732.393 kb on + strandat 732.393 kb on + strand, within HGI48_RS03485at 732.394 kb on - strand, within HGI48_RS03485at 732.394 kb on - strand, within HGI48_RS03485at 732.394 kb on - strand, within HGI48_RS03485at 732.394 kb on - strand, within HGI48_RS03485at 732.396 kb on + strand, within HGI48_RS03485at 732.397 kb on - strand, within HGI48_RS03485at 732.397 kb on - strand, within HGI48_RS03485at 732.446 kb on + strandat 732.447 kb on - strandat 732.536 kb on + strandat 732.537 kb on - strandat 732.571 kb on + strandat 732.583 kb on - strandat 732.583 kb on - strandat 732.611 kb on + strandat 732.611 kb on + strandat 732.612 kb on - strandat 732.620 kb on + strandat 732.620 kb on + strandat 732.620 kb on + strandat 732.621 kb on - strandat 732.640 kb on + strandat 732.640 kb on + strandat 732.640 kb on + strandat 732.705 kb on - strandat 732.728 kb on + strandat 732.729 kb on - strandat 732.742 kb on - strandat 732.742 kb on - strandat 732.779 kb on + strandat 732.780 kb on - strandat 732.785 kb on + strandat 732.785 kb on + strandat 732.786 kb on - strandat 732.786 kb on - strandat 732.786 kb on - strandat 732.789 kb on + strandat 732.789 kb on + strandat 732.789 kb on + strandat 732.789 kb on + strandat 732.790 kb on - strandat 732.790 kb on - strandat 732.842 kb on - strandat 732.912 kb on + strand, within HGI48_RS03490at 732.912 kb on + strand, within HGI48_RS03490at 732.912 kb on + strand, within HGI48_RS03490at 732.912 kb on + strand, within HGI48_RS03490at 732.912 kb on + strand, within HGI48_RS03490at 732.912 kb on + strand, within HGI48_RS03490at 732.913 kb on - strandat 732.913 kb on - strand, within HGI48_RS03490at 732.916 kb on + strand, within HGI48_RS03490at 732.917 kb on - strand, within HGI48_RS03490at 732.987 kb on + strand, within HGI48_RS03490at 732.988 kb on - strand, within HGI48_RS03490at 732.991 kb on - strand, within HGI48_RS03490at 733.050 kb on + strand, within HGI48_RS03490at 733.050 kb on + strand, within HGI48_RS03490at 733.092 kb on + strand, within HGI48_RS03490at 733.099 kb on + strand, within HGI48_RS03490at 733.099 kb on + strand, within HGI48_RS03490at 733.100 kb on - strandat 733.141 kb on + strand, within HGI48_RS03490at 733.165 kb on + strand, within HGI48_RS03490at 733.165 kb on + strand, within HGI48_RS03490at 733.166 kb on - strand, within HGI48_RS03490at 733.166 kb on - strand, within HGI48_RS03490at 733.197 kb on + strand, within HGI48_RS03490at 733.198 kb on - strand, within HGI48_RS03490at 733.222 kb on + strand, within HGI48_RS03490at 733.288 kb on + strand, within HGI48_RS03490at 733.288 kb on + strand, within HGI48_RS03490at 733.360 kb on + strand, within HGI48_RS03490at 733.361 kb on - strand, within HGI48_RS03490at 733.396 kb on - strandat 733.433 kb on + strand, within HGI48_RS03490at 733.433 kb on + strand, within HGI48_RS03490at 733.434 kb on - strand, within HGI48_RS03490at 733.434 kb on - strand, within HGI48_RS03490at 733.434 kb on - strand, within HGI48_RS03490at 733.440 kb on + strand, within HGI48_RS03490at 733.455 kb on - strand, within HGI48_RS03490at 733.488 kb on + strandat 733.489 kb on - strand, within HGI48_RS03490at 733.516 kb on + strand, within HGI48_RS03490at 733.516 kb on + strand, within HGI48_RS03490at 733.516 kb on + strand, within HGI48_RS03490at 733.516 kb on + strand, within HGI48_RS03490

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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730,925 + +0.9
730,925 + HGI48_RS03480 0.33 +0.5
730,981 + HGI48_RS03480 0.37 -1.5
730,981 + HGI48_RS03480 0.37 +1.6
730,999 + HGI48_RS03480 0.38 -1.2
730,999 + HGI48_RS03480 0.38 -0.5
730,999 + HGI48_RS03480 0.38 +0.7
730,999 + HGI48_RS03480 0.38 +0.2
730,999 + HGI48_RS03480 0.38 -0.1
731,187 + -0.1
731,187 + HGI48_RS03480 0.51 +0.8
731,188 - HGI48_RS03480 0.51 +0.7
731,190 - HGI48_RS03480 0.51 +0.6
731,190 - HGI48_RS03480 0.51 +0.8
731,261 + HGI48_RS03480 0.56 -0.5
731,312 + HGI48_RS03480 0.59 +0.2
731,312 + HGI48_RS03480 0.59 -2.1
731,368 + HGI48_RS03480 0.63 +0.1
731,369 - HGI48_RS03480 0.63 +0.8
731,410 + HGI48_RS03480 0.66 -0.2
731,410 + HGI48_RS03480 0.66 +0.7
731,410 + HGI48_RS03480 0.66 -0.2
731,410 + HGI48_RS03480 0.66 -2.3
731,410 + HGI48_RS03480 0.66 -1.5
731,410 + HGI48_RS03480 0.66 +0.2
731,411 - HGI48_RS03480 0.66 +0.7
731,411 - HGI48_RS03480 0.66 +0.1
731,411 - HGI48_RS03480 0.66 -0.8
731,411 - HGI48_RS03480 0.66 +0.1
731,411 - HGI48_RS03480 0.66 -0.8
731,411 - HGI48_RS03480 0.66 -0.5
731,411 - HGI48_RS03480 0.66 -1.2
731,458 - HGI48_RS03480 0.69 -0.1
731,458 - HGI48_RS03480 0.69 +0.2
731,464 + +0.5
731,464 + HGI48_RS03480 0.70 -0.5
731,464 + HGI48_RS03480 0.70 +2.1
731,587 - HGI48_RS03480 0.78 +0.1
731,725 - HGI48_RS03480 0.88 +0.2
731,744 + HGI48_RS03480 0.89 -1.1
731,804 + +0.7
731,805 - -0.7
731,805 - -0.3
731,822 + -0.7
731,823 - +0.9
731,832 + -2.3
731,920 + +0.5
731,920 + +0.5
731,920 + -1.1
731,920 + -0.9
731,920 + -0.1
731,920 + +2.1
731,920 + +1.1
731,921 - +0.7
731,921 - -1.1
731,921 - -1.8
731,963 + -0.2
731,974 + -0.5
731,974 + HGI48_RS03485 0.11 -0.2
731,974 + HGI48_RS03485 0.11 +0.7
731,975 - HGI48_RS03485 0.11 +0.2
731,975 - HGI48_RS03485 0.11 -0.5
731,975 - HGI48_RS03485 0.11 -1.5
732,055 + HGI48_RS03485 0.23 +0.3
732,055 + HGI48_RS03485 0.23 -1.3
732,056 - HGI48_RS03485 0.23 -1.8
732,056 - HGI48_RS03485 0.23 -1.5
732,195 + HGI48_RS03485 0.43 +0.8
732,196 - HGI48_RS03485 0.44 +0.6
732,211 + HGI48_RS03485 0.46 -0.5
732,287 + HGI48_RS03485 0.57 -1.0
732,288 - HGI48_RS03485 0.57 +0.1
732,288 - HGI48_RS03485 0.57 -0.5
732,333 + HGI48_RS03485 0.64 -1.5
732,350 - HGI48_RS03485 0.66 +0.7
732,350 - HGI48_RS03485 0.66 +0.5
732,350 - HGI48_RS03485 0.66 -1.8
732,352 + HGI48_RS03485 0.67 +1.0
732,352 + HGI48_RS03485 0.67 +1.0
732,353 - HGI48_RS03485 0.67 +0.5
732,378 + HGI48_RS03485 0.70 -0.3
732,391 + HGI48_RS03485 0.72 +0.5
732,391 + HGI48_RS03485 0.72 +0.8
732,391 + HGI48_RS03485 0.72 -0.1
732,392 - HGI48_RS03485 0.72 +0.0
732,392 - HGI48_RS03485 0.72 +0.6
732,392 - HGI48_RS03485 0.72 -0.5
732,393 + HGI48_RS03485 0.73 -1.5
732,393 + -0.1
732,393 + HGI48_RS03485 0.73 -0.4
732,394 - HGI48_RS03485 0.73 +0.5
732,394 - HGI48_RS03485 0.73 +1.4
732,394 - HGI48_RS03485 0.73 -2.5
732,394 - HGI48_RS03485 0.73 -1.3
732,396 + HGI48_RS03485 0.73 +0.2
732,397 - HGI48_RS03485 0.73 -2.7
732,397 - HGI48_RS03485 0.73 -0.2
732,446 + -1.1
732,447 - +0.9
732,536 + +1.5
732,537 - +1.3
732,571 + -0.1
732,583 - -0.1
732,583 - -1.5
732,611 + +0.9
732,611 + +0.2
732,612 - -0.7
732,620 + -0.2
732,620 + -0.4
732,620 + -1.3
732,621 - +0.9
732,640 + -0.1
732,640 + -0.1
732,640 + -1.1
732,705 - +0.1
732,728 + +0.0
732,729 - +1.3
732,742 - -0.3
732,742 - -0.2
732,779 + +0.2
732,780 - +0.5
732,785 + -0.1
732,785 + +0.8
732,786 - +0.7
732,786 - -0.1
732,786 - -1.1
732,789 + -1.1
732,789 + -0.4
732,789 + -1.2
732,789 + -0.1
732,790 - -1.1
732,790 - +0.5
732,842 - +0.9
732,912 + HGI48_RS03490 0.10 -0.1
732,912 + HGI48_RS03490 0.10 -0.8
732,912 + HGI48_RS03490 0.10 +0.2
732,912 + HGI48_RS03490 0.10 -2.1
732,912 + HGI48_RS03490 0.10 -1.7
732,912 + HGI48_RS03490 0.10 -1.8
732,913 - +0.5
732,913 - HGI48_RS03490 0.10 +0.5
732,916 + HGI48_RS03490 0.11 +0.2
732,917 - HGI48_RS03490 0.11 -0.8
732,987 + HGI48_RS03490 0.16 -0.5
732,988 - HGI48_RS03490 0.16 -0.5
732,991 - HGI48_RS03490 0.16 -0.5
733,050 + HGI48_RS03490 0.20 +0.2
733,050 + HGI48_RS03490 0.20 -0.5
733,092 + HGI48_RS03490 0.23 -0.2
733,099 + HGI48_RS03490 0.24 -1.8
733,099 + HGI48_RS03490 0.24 -0.8
733,100 - +1.5
733,141 + HGI48_RS03490 0.27 -0.5
733,165 + HGI48_RS03490 0.29 +0.2
733,165 + HGI48_RS03490 0.29 -0.4
733,166 - HGI48_RS03490 0.29 +1.1
733,166 - HGI48_RS03490 0.29 +2.0
733,197 + HGI48_RS03490 0.31 +0.1
733,198 - HGI48_RS03490 0.31 -0.2
733,222 + HGI48_RS03490 0.33 +0.6
733,288 + HGI48_RS03490 0.37 +0.8
733,288 + HGI48_RS03490 0.37 -0.6
733,360 + HGI48_RS03490 0.43 -0.5
733,361 - HGI48_RS03490 0.43 -0.5
733,396 - -0.1
733,433 + HGI48_RS03490 0.48 -1.4
733,433 + HGI48_RS03490 0.48 -1.3
733,434 - HGI48_RS03490 0.48 -1.5
733,434 - HGI48_RS03490 0.48 +0.4
733,434 - HGI48_RS03490 0.48 +0.2
733,440 + HGI48_RS03490 0.48 -0.2
733,455 - HGI48_RS03490 0.49 -0.1
733,488 + -1.1
733,489 - HGI48_RS03490 0.52 -0.1
733,516 + HGI48_RS03490 0.54 -1.4
733,516 + HGI48_RS03490 0.54 +0.5
733,516 + HGI48_RS03490 0.54 -0.5
733,516 + HGI48_RS03490 0.54 -0.7

Or see this region's nucleotide sequence