Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03350 and HGI48_RS03355 are separated by 116 nucleotides HGI48_RS03355 and HGI48_RS03360 are separated by 32 nucleotides HGI48_RS03360 and HGI48_RS03365 are separated by 76 nucleotides HGI48_RS03365 and HGI48_RS03370 are separated by 111 nucleotides HGI48_RS03370 and HGI48_RS03375 are separated by 126 nucleotides
HGI48_RS03350: HGI48_RS03350 - LysR family transcriptional regulator, at 705,734 to 706,636
_RS03350
HGI48_RS03355: HGI48_RS03355 - tRNA-Leu, at 706,753 to 706,838
_RS03355
HGI48_RS03360: HGI48_RS03360 - tRNA-Leu, at 706,871 to 706,956
_RS03360
HGI48_RS03365: HGI48_RS03365 - tRNA-Leu, at 707,033 to 707,118
_RS03365
HGI48_RS03370: HGI48_RS03370 - DUF1435 domain-containing protein, at 707,230 to 707,514
_RS03370
HGI48_RS03375: HGI48_RS03375 - LysR family transcriptional regulator, at 707,641 to 708,534
_RS03375
Position (kb) 706
707 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.926 kb on + strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.927 kb on - strand, within HGI48_RS03350 at 705.929 kb on + strand, within HGI48_RS03350 at 706.226 kb on - strand, within HGI48_RS03350 at 706.226 kb on - strand, within HGI48_RS03350 at 706.307 kb on + strand, within HGI48_RS03350 at 706.308 kb on - strand, within HGI48_RS03350 at 706.321 kb on + strand, within HGI48_RS03350 at 706.321 kb on + strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.322 kb on - strand, within HGI48_RS03350 at 706.366 kb on + strand, within HGI48_RS03350 at 706.367 kb on - strand, within HGI48_RS03350 at 706.415 kb on + strand at 706.415 kb on + strand at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.415 kb on + strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.416 kb on - strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.541 kb on + strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.542 kb on - strand, within HGI48_RS03350 at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.550 kb on + strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.551 kb on - strand at 706.676 kb on + strand at 706.677 kb on - strand at 706.677 kb on - strand at 706.728 kb on + strand at 706.728 kb on + strand at 706.728 kb on + strand at 706.729 kb on - strand at 706.737 kb on + strand at 706.737 kb on + strand at 706.737 kb on + strand at 706.738 kb on - strand at 706.738 kb on - strand at 706.794 kb on + strand, within HGI48_RS03355 at 706.794 kb on + strand at 706.891 kb on - strand, within HGI48_RS03360 at 707.013 kb on + strand at 707.135 kb on + strand at 707.136 kb on - strand at 707.169 kb on + strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.170 kb on - strand at 707.231 kb on + strand at 707.243 kb on - strand at 707.366 kb on + strand, within HGI48_RS03370 at 707.367 kb on - strand, within HGI48_RS03370 at 707.386 kb on + strand, within HGI48_RS03370 at 707.386 kb on + strand at 707.431 kb on + strand, within HGI48_RS03370 at 707.431 kb on + strand, within HGI48_RS03370 at 707.431 kb on + strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.432 kb on - strand, within HGI48_RS03370 at 707.433 kb on + strand, within HGI48_RS03370 at 707.433 kb on + strand, within HGI48_RS03370 at 707.434 kb on - strand, within HGI48_RS03370 at 707.434 kb on - strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.473 kb on + strand, within HGI48_RS03370 at 707.474 kb on - strand, within HGI48_RS03370 at 707.539 kb on + strand at 707.551 kb on + strand at 707.569 kb on - strand at 707.569 kb on - strand at 707.569 kb on - strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.570 kb on + strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.571 kb on - strand at 707.595 kb on + strand at 707.627 kb on - strand at 707.657 kb on + strand at 707.657 kb on + strand at 707.658 kb on - strand at 707.658 kb on - strand at 707.733 kb on + strand, within HGI48_RS03375 at 707.734 kb on - strand, within HGI48_RS03375 at 707.762 kb on + strand, within HGI48_RS03375 at 707.762 kb on + strand, within HGI48_RS03375 at 707.762 kb on + strand at 707.763 kb on - strand, within HGI48_RS03375 at 707.763 kb on - strand, within HGI48_RS03375 at 707.763 kb on - strand, within HGI48_RS03375 at 707.897 kb on + strand, within HGI48_RS03375 at 707.898 kb on - strand, within HGI48_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 705,926 + HGI48_RS03350 0.21 -0.5 705,926 + HGI48_RS03350 0.21 +0.3 705,926 + HGI48_RS03350 0.21 -0.1 705,926 + HGI48_RS03350 0.21 +0.2 705,926 + HGI48_RS03350 0.21 +0.7 705,926 + HGI48_RS03350 0.21 -0.3 705,926 + HGI48_RS03350 0.21 +0.1 705,927 - HGI48_RS03350 0.21 -0.5 705,927 - HGI48_RS03350 0.21 +1.0 705,927 - HGI48_RS03350 0.21 -1.7 705,927 - HGI48_RS03350 0.21 -1.5 705,929 + HGI48_RS03350 0.22 -0.5 706,226 - HGI48_RS03350 0.54 -1.5 706,226 - HGI48_RS03350 0.54 +0.5 706,307 + HGI48_RS03350 0.63 -0.3 706,308 - HGI48_RS03350 0.64 +0.2 706,321 + HGI48_RS03350 0.65 -0.4 706,321 + HGI48_RS03350 0.65 +0.1 706,322 - HGI48_RS03350 0.65 -0.7 706,322 - HGI48_RS03350 0.65 -3.3 706,322 - HGI48_RS03350 0.65 -0.8 706,322 - HGI48_RS03350 0.65 -0.1 706,322 - HGI48_RS03350 0.65 -0.4 706,322 - HGI48_RS03350 0.65 -0.1 706,322 - HGI48_RS03350 0.65 -0.5 706,322 - HGI48_RS03350 0.65 -0.9 706,366 + HGI48_RS03350 0.70 +1.5 706,367 - HGI48_RS03350 0.70 -1.5 706,415 + +1.9 706,415 + +0.5 706,415 + HGI48_RS03350 0.75 -0.4 706,415 + +1.5 706,415 + HGI48_RS03350 0.75 +1.5 706,415 + HGI48_RS03350 0.75 +1.3 706,415 + HGI48_RS03350 0.75 +0.3 706,415 + HGI48_RS03350 0.75 +0.3 706,415 + HGI48_RS03350 0.75 +0.8 706,415 + HGI48_RS03350 0.75 -0.1 706,416 - HGI48_RS03350 0.76 -2.7 706,416 - HGI48_RS03350 0.76 +0.1 706,416 - HGI48_RS03350 0.76 -0.1 706,416 - HGI48_RS03350 0.76 -1.2 706,416 - HGI48_RS03350 0.76 -0.1 706,416 - HGI48_RS03350 0.76 -0.1 706,416 - HGI48_RS03350 0.76 -0.1 706,541 + HGI48_RS03350 0.89 +0.2 706,541 + HGI48_RS03350 0.89 -1.8 706,541 + HGI48_RS03350 0.89 -0.1 706,542 - HGI48_RS03350 0.89 +0.2 706,542 - HGI48_RS03350 0.89 -1.5 706,542 - HGI48_RS03350 0.89 -1.7 706,550 + -0.6 706,550 + -2.1 706,550 + -0.1 706,550 + -0.1 706,550 + -0.2 706,550 + -0.2 706,550 + +0.4 706,551 - -0.2 706,551 - +1.8 706,551 - -1.2 706,551 - +0.7 706,551 - -1.5 706,551 - -0.5 706,551 - -0.9 706,676 + +0.5 706,677 - -0.8 706,677 - +0.1 706,728 + +1.0 706,728 + -2.1 706,728 + +1.5 706,729 - +0.1 706,737 + +2.1 706,737 + +0.5 706,737 + -2.1 706,738 - -1.1 706,738 - -1.8 706,794 + HGI48_RS03355 0.48 -0.1 706,794 + +2.7 706,891 - HGI48_RS03360 0.23 -1.5 707,013 + +0.1 707,135 + -0.1 707,136 - -2.3 707,169 + +1.5 707,170 - +0.7 707,170 - -0.9 707,170 - +0.3 707,170 - -1.8 707,231 + -0.9 707,243 - -0.4 707,366 + HGI48_RS03370 0.48 +0.2 707,367 - HGI48_RS03370 0.48 -0.0 707,386 + HGI48_RS03370 0.55 +0.5 707,386 + +3.1 707,431 + HGI48_RS03370 0.71 -0.6 707,431 + HGI48_RS03370 0.71 +0.4 707,431 + HGI48_RS03370 0.71 -0.2 707,432 - HGI48_RS03370 0.71 +0.3 707,432 - HGI48_RS03370 0.71 -1.2 707,432 - HGI48_RS03370 0.71 -1.2 707,432 - HGI48_RS03370 0.71 +0.2 707,432 - HGI48_RS03370 0.71 -0.5 707,432 - HGI48_RS03370 0.71 -0.7 707,433 + HGI48_RS03370 0.71 -0.1 707,433 + HGI48_RS03370 0.71 -1.3 707,434 - HGI48_RS03370 0.72 +0.7 707,434 - HGI48_RS03370 0.72 -2.8 707,473 + HGI48_RS03370 0.85 +0.2 707,473 + HGI48_RS03370 0.85 +0.8 707,473 + HGI48_RS03370 0.85 -0.0 707,473 + HGI48_RS03370 0.85 -0.5 707,474 - HGI48_RS03370 0.86 -1.3 707,539 + -1.2 707,551 + +1.9 707,569 - +0.5 707,569 - -0.4 707,569 - -1.5 707,570 + -1.1 707,570 + -0.5 707,570 + -0.8 707,570 + -0.6 707,570 + -0.1 707,570 + -0.9 707,571 - +1.4 707,571 - +0.3 707,571 - -0.5 707,571 - -0.2 707,571 - -0.3 707,571 - -0.2 707,571 - -0.3 707,571 - -2.3 707,571 - -0.1 707,571 - +0.5 707,595 + -0.8 707,627 - +0.2 707,657 + -0.6 707,657 + +0.1 707,658 - -0.2 707,658 - +1.0 707,733 + HGI48_RS03375 0.10 +0.7 707,734 - HGI48_RS03375 0.10 -1.7 707,762 + HGI48_RS03375 0.14 -1.8 707,762 + HGI48_RS03375 0.14 +0.1 707,762 + +2.1 707,763 - HGI48_RS03375 0.14 -0.2 707,763 - HGI48_RS03375 0.14 +0.1 707,763 - HGI48_RS03375 0.14 -3.1 707,897 + HGI48_RS03375 0.29 +0.0 707,898 - HGI48_RS03375 0.29 -0.7
Or see this region's nucleotide sequence