Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03240 and HGI48_RS03245 are separated by 74 nucleotides HGI48_RS03245 and HGI48_RS03250 overlap by 1 nucleotides HGI48_RS03250 and HGI48_RS03255 are separated by 108 nucleotides HGI48_RS03255 and HGI48_RS03260 are separated by 250 nucleotides
HGI48_RS03240: HGI48_RS03240 - translation initiation factor IF-2, at 683,187 to 685,904
_RS03240
HGI48_RS03245: HGI48_RS03245 - 30S ribosome-binding factor RbfA, at 685,979 to 686,380
_RS03245
HGI48_RS03250: HGI48_RS03250 - tRNA pseudouridine(55) synthase TruB, at 686,380 to 687,336
_RS03250
HGI48_RS03255: HGI48_RS03255 - 30S ribosomal protein S15, at 687,445 to 687,714
_RS03255
HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085
_RS03260
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.347 kb on + strand at 686.379 kb on - strand at 686.474 kb on + strand at 686.475 kb on - strand at 686.508 kb on + strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.598 kb on + strand, within HGI48_RS03250 at 686.598 kb on + strand at 686.640 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand at 686.658 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand, within HGI48_RS03250 at 686.756 kb on - strand at 686.756 kb on - strand, within HGI48_RS03250 at 686.756 kb on - strand, within HGI48_RS03250 at 686.756 kb on - strand, within HGI48_RS03250 at 686.770 kb on + strand, within HGI48_RS03250 at 686.846 kb on - strand, within HGI48_RS03250 at 686.853 kb on - strand, within HGI48_RS03250 at 686.853 kb on - strand, within HGI48_RS03250 at 686.914 kb on + strand at 686.914 kb on + strand, within HGI48_RS03250 at 686.914 kb on + strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.928 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.975 kb on - strand, within HGI48_RS03250 at 687.001 kb on + strand, within HGI48_RS03250 at 687.141 kb on + strand, within HGI48_RS03250 at 687.142 kb on - strand, within HGI48_RS03250 at 687.176 kb on + strand, within HGI48_RS03250 at 687.713 kb on - strand at 687.713 kb on - strand at 687.713 kb on - strand at 687.785 kb on - strand at 687.789 kb on + strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.801 kb on - strand at 687.804 kb on + strand at 687.804 kb on + strand at 687.805 kb on - strand at 687.818 kb on - strand at 687.849 kb on - strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.892 kb on - strand at 687.892 kb on - strand at 687.910 kb on + strand at 687.911 kb on - strand at 687.911 kb on - strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.925 kb on - strand at 687.951 kb on + strand at 687.951 kb on + strand at 687.962 kb on - strand at 687.962 kb on - strand at 688.006 kb on + strand at 688.064 kb on - strand at 688.064 kb on - strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.084 kb on - strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.162 kb on + strand at 688.163 kb on - strand at 688.163 kb on - strand at 688.166 kb on + strand at 688.167 kb on - strand at 688.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 686,347 + -0.8 686,379 - -0.1 686,474 + +0.5 686,475 - +0.7 686,508 + HGI48_RS03250 0.13 +0.2 686,509 - HGI48_RS03250 0.13 -0.2 686,509 - HGI48_RS03250 0.13 +0.5 686,509 - HGI48_RS03250 0.13 -0.9 686,598 + HGI48_RS03250 0.23 +1.8 686,598 + -1.1 686,640 + HGI48_RS03250 0.27 +0.3 686,658 + HGI48_RS03250 0.29 -1.5 686,658 + +0.5 686,658 + HGI48_RS03250 0.29 +0.5 686,658 + HGI48_RS03250 0.29 +1.5 686,756 - +0.5 686,756 - HGI48_RS03250 0.39 +0.1 686,756 - HGI48_RS03250 0.39 -0.1 686,756 - HGI48_RS03250 0.39 +0.5 686,770 + HGI48_RS03250 0.41 -0.4 686,846 - HGI48_RS03250 0.49 -0.6 686,853 - HGI48_RS03250 0.49 +1.4 686,853 - HGI48_RS03250 0.49 +0.8 686,914 + +0.5 686,914 + HGI48_RS03250 0.56 -0.8 686,914 + HGI48_RS03250 0.56 -0.3 686,915 - HGI48_RS03250 0.56 +0.5 686,915 - HGI48_RS03250 0.56 +0.4 686,915 - HGI48_RS03250 0.56 +0.0 686,915 - HGI48_RS03250 0.56 -0.1 686,915 - HGI48_RS03250 0.56 -1.5 686,928 + HGI48_RS03250 0.57 +0.0 686,974 + HGI48_RS03250 0.62 +1.5 686,974 + HGI48_RS03250 0.62 -1.5 686,975 - HGI48_RS03250 0.62 +0.8 687,001 + HGI48_RS03250 0.65 -0.7 687,141 + HGI48_RS03250 0.80 +0.2 687,142 - HGI48_RS03250 0.80 -0.7 687,176 + HGI48_RS03250 0.83 +0.2 687,713 - -0.3 687,713 - -0.4 687,713 - -1.5 687,785 - +0.5 687,789 + -0.7 687,790 - -0.5 687,790 - -1.8 687,790 - +0.1 687,790 - +0.0 687,790 - -2.1 687,790 - -1.0 687,800 + -1.5 687,800 + -0.1 687,800 + -0.2 687,801 - -0.2 687,804 + +0.1 687,804 + -0.5 687,805 - -1.1 687,818 - -1.1 687,849 - +1.7 687,891 + -0.4 687,891 + -1.1 687,891 + -0.3 687,891 + -0.5 687,891 + -1.1 687,891 + -1.8 687,892 - -2.3 687,892 - -0.8 687,910 + -0.5 687,911 - -1.2 687,911 - +0.4 687,924 + -1.6 687,924 + -0.3 687,924 + -0.1 687,925 - -2.1 687,951 + -1.8 687,951 + +1.6 687,962 - +0.9 687,962 - -2.5 688,006 + -2.3 688,064 - -1.8 688,064 - -2.6 688,066 + -1.1 688,066 + -0.4 688,066 + +0.3 688,084 - -1.8 688,151 + -1.8 688,151 + +0.2 688,151 + -0.5 688,152 - -0.3 688,152 - -2.5 688,152 - -2.3 688,152 - -0.3 688,152 - +0.7 688,152 - -1.4 688,162 + +0.5 688,163 - -0.5 688,163 - -1.1 688,166 + +0.0 688,167 - -0.8 688,167 - -0.9
Or see this region's nucleotide sequence