Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03085

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03080 and HGI48_RS03085 overlap by 4 nucleotidesHGI48_RS03085 and HGI48_RS03090 overlap by 4 nucleotides HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318 _RS03080 HGI48_RS03085: HGI48_RS03085 - phage tail protein, at 656,315 to 656,848 _RS03085 HGI48_RS03090: HGI48_RS03090 - phage late control D family protein, at 656,845 to 657,954 _RS03090 Position (kb) 656 657Strain fitness (log2 ratio) -2 -1 0 1 2at 655.505 kb on - strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strandat 655.568 kb on + strand, within HGI48_RS03080at 655.568 kb on + strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.569 kb on - strand, within HGI48_RS03080at 655.900 kb on - strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.920 kb on + strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strandat 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 655.921 kb on - strand, within HGI48_RS03080at 656.003 kb on + strand, within HGI48_RS03080at 656.112 kb on + strandat 656.113 kb on - strandat 656.165 kb on + strandat 656.165 kb on + strandat 656.165 kb on + strandat 656.165 kb on + strandat 656.166 kb on - strandat 656.166 kb on - strandat 656.166 kb on - strandat 656.166 kb on - strandat 656.166 kb on - strandat 656.183 kb on + strandat 656.183 kb on + strandat 656.184 kb on - strandat 656.323 kb on + strandat 656.323 kb on + strandat 656.323 kb on + strandat 656.323 kb on + strandat 656.323 kb on + strandat 656.324 kb on - strandat 656.326 kb on + strandat 656.326 kb on + strandat 656.327 kb on - strandat 656.327 kb on - strandat 656.368 kb on - strandat 656.413 kb on + strand, within HGI48_RS03085at 656.414 kb on - strand, within HGI48_RS03085at 656.432 kb on - strand, within HGI48_RS03085at 656.610 kb on - strand, within HGI48_RS03085at 656.618 kb on + strandat 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strandat 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strandat 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.618 kb on + strand, within HGI48_RS03085at 656.619 kb on - strandat 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.619 kb on - strand, within HGI48_RS03085at 656.700 kb on + strand, within HGI48_RS03085at 656.700 kb on + strand, within HGI48_RS03085at 656.700 kb on + strand, within HGI48_RS03085at 656.701 kb on - strand, within HGI48_RS03085at 656.701 kb on - strand, within HGI48_RS03085at 656.701 kb on - strand, within HGI48_RS03085at 656.701 kb on - strandat 656.710 kb on - strandat 656.967 kb on + strand, within HGI48_RS03090at 656.999 kb on + strand, within HGI48_RS03090at 657.000 kb on - strand, within HGI48_RS03090at 657.000 kb on - strand, within HGI48_RS03090at 657.055 kb on - strandat 657.079 kb on + strand, within HGI48_RS03090at 657.080 kb on - strand, within HGI48_RS03090at 657.310 kb on - strand, within HGI48_RS03090at 657.310 kb on - strand, within HGI48_RS03090at 657.310 kb on - strand, within HGI48_RS03090at 657.401 kb on + strand, within HGI48_RS03090at 657.401 kb on + strand, within HGI48_RS03090at 657.401 kb on + strand, within HGI48_RS03090at 657.459 kb on + strand, within HGI48_RS03090at 657.459 kb on + strand, within HGI48_RS03090at 657.460 kb on - strand, within HGI48_RS03090at 657.460 kb on - strand, within HGI48_RS03090at 657.493 kb on - strand, within HGI48_RS03090at 657.498 kb on - strand, within HGI48_RS03090at 657.515 kb on - strand, within HGI48_RS03090at 657.515 kb on - strand, within HGI48_RS03090at 657.532 kb on - strand, within HGI48_RS03090at 657.532 kb on - strand, within HGI48_RS03090at 657.574 kb on - strand, within HGI48_RS03090at 657.649 kb on + strand, within HGI48_RS03090at 657.649 kb on + strand, within HGI48_RS03090at 657.650 kb on - strand, within HGI48_RS03090at 657.680 kb on + strand, within HGI48_RS03090at 657.681 kb on - strandat 657.694 kb on + strand, within HGI48_RS03090at 657.695 kb on - strandat 657.695 kb on - strand, within HGI48_RS03090at 657.702 kb on + strand, within HGI48_RS03090at 657.726 kb on + strand, within HGI48_RS03090at 657.726 kb on + strand, within HGI48_RS03090at 657.727 kb on - strand, within HGI48_RS03090at 657.727 kb on - strand, within HGI48_RS03090at 657.727 kb on - strand, within HGI48_RS03090at 657.813 kb on - strand, within HGI48_RS03090

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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655,505 - HGI48_RS03080 0.71 -0.5
655,568 + HGI48_RS03080 0.74 +1.0
655,568 + HGI48_RS03080 0.74 +0.3
655,568 + HGI48_RS03080 0.74 +1.7
655,568 + HGI48_RS03080 0.74 -0.1
655,568 + HGI48_RS03080 0.74 +1.2
655,568 + -1.1
655,568 + HGI48_RS03080 0.74 -0.1
655,568 + HGI48_RS03080 0.74 -2.1
655,569 - HGI48_RS03080 0.74 -0.2
655,569 - HGI48_RS03080 0.74 +0.3
655,569 - HGI48_RS03080 0.74 +0.8
655,569 - HGI48_RS03080 0.74 +0.9
655,569 - HGI48_RS03080 0.74 +1.3
655,569 - HGI48_RS03080 0.74 +0.2
655,569 - HGI48_RS03080 0.74 -0.1
655,569 - HGI48_RS03080 0.74 -1.7
655,569 - HGI48_RS03080 0.74 +0.1
655,569 - HGI48_RS03080 0.74 -1.6
655,569 - HGI48_RS03080 0.74 -1.2
655,900 - HGI48_RS03080 0.85 -0.3
655,920 + HGI48_RS03080 0.86 -0.2
655,920 + HGI48_RS03080 0.86 +0.2
655,920 + HGI48_RS03080 0.86 -0.1
655,920 + HGI48_RS03080 0.86 -1.5
655,920 + HGI48_RS03080 0.86 -0.9
655,920 + HGI48_RS03080 0.86 +1.4
655,920 + HGI48_RS03080 0.86 +0.5
655,920 + HGI48_RS03080 0.86 -0.2
655,920 + HGI48_RS03080 0.86 -0.5
655,920 + HGI48_RS03080 0.86 +1.0
655,920 + HGI48_RS03080 0.86 +0.7
655,921 - HGI48_RS03080 0.86 +0.1
655,921 - HGI48_RS03080 0.86 -0.5
655,921 - HGI48_RS03080 0.86 +0.8
655,921 - HGI48_RS03080 0.86 +1.9
655,921 - +0.5
655,921 - HGI48_RS03080 0.86 -1.1
655,921 - HGI48_RS03080 0.86 -0.4
655,921 - HGI48_RS03080 0.86 +0.2
655,921 - HGI48_RS03080 0.86 +0.1
655,921 - HGI48_RS03080 0.86 +0.2
655,921 - HGI48_RS03080 0.86 +1.0
655,921 - HGI48_RS03080 0.86 -1.2
655,921 - HGI48_RS03080 0.86 -0.2
656,003 + HGI48_RS03080 0.89 -1.5
656,112 + -2.5
656,113 - +0.5
656,165 + +0.5
656,165 + +0.7
656,165 + +0.5
656,165 + -0.5
656,166 - +0.2
656,166 - -1.8
656,166 - -0.0
656,166 - -0.4
656,166 - +2.1
656,183 + -0.5
656,183 + -0.5
656,184 - -0.5
656,323 + +1.1
656,323 + +1.0
656,323 + +0.3
656,323 + -1.1
656,323 + -1.2
656,324 - -0.3
656,326 + +0.7
656,326 + -1.1
656,327 - +0.5
656,327 - +0.4
656,368 - -0.7
656,413 + HGI48_RS03085 0.18 -0.4
656,414 - HGI48_RS03085 0.19 +1.3
656,432 - HGI48_RS03085 0.22 -0.6
656,610 - HGI48_RS03085 0.55 +0.1
656,618 + +0.9
656,618 + HGI48_RS03085 0.57 -0.6
656,618 + HGI48_RS03085 0.57 +0.1
656,618 + +1.1
656,618 + HGI48_RS03085 0.57 +0.7
656,618 + HGI48_RS03085 0.57 +0.2
656,618 + HGI48_RS03085 0.57 +0.2
656,618 + -1.1
656,618 + HGI48_RS03085 0.57 -1.8
656,618 + HGI48_RS03085 0.57 +0.7
656,618 + HGI48_RS03085 0.57 -1.5
656,618 + HGI48_RS03085 0.57 +0.7
656,618 + HGI48_RS03085 0.57 -0.2
656,618 + HGI48_RS03085 0.57 +0.8
656,618 + HGI48_RS03085 0.57 -0.3
656,618 + HGI48_RS03085 0.57 -0.5
656,618 + HGI48_RS03085 0.57 -0.1
656,618 + HGI48_RS03085 0.57 +0.2
656,618 + HGI48_RS03085 0.57 +0.5
656,618 + HGI48_RS03085 0.57 +0.3
656,618 + HGI48_RS03085 0.57 -0.5
656,618 + HGI48_RS03085 0.57 +0.8
656,618 + HGI48_RS03085 0.57 -0.6
656,619 - -0.5
656,619 - HGI48_RS03085 0.57 -0.2
656,619 - HGI48_RS03085 0.57 +1.1
656,619 - HGI48_RS03085 0.57 +0.7
656,619 - HGI48_RS03085 0.57 -1.5
656,619 - HGI48_RS03085 0.57 -1.3
656,619 - HGI48_RS03085 0.57 -0.8
656,619 - HGI48_RS03085 0.57 +0.5
656,619 - HGI48_RS03085 0.57 +0.1
656,619 - HGI48_RS03085 0.57 -2.1
656,619 - HGI48_RS03085 0.57 +0.2
656,619 - HGI48_RS03085 0.57 +0.2
656,619 - HGI48_RS03085 0.57 +0.4
656,619 - HGI48_RS03085 0.57 -0.5
656,619 - HGI48_RS03085 0.57 -0.1
656,619 - HGI48_RS03085 0.57 -0.7
656,619 - HGI48_RS03085 0.57 +0.0
656,700 + HGI48_RS03085 0.72 -0.5
656,700 + HGI48_RS03085 0.72 -0.2
656,700 + HGI48_RS03085 0.72 +0.2
656,701 - HGI48_RS03085 0.72 -1.4
656,701 - HGI48_RS03085 0.72 +0.5
656,701 - HGI48_RS03085 0.72 -0.2
656,701 - +1.5
656,710 - -1.1
656,967 + HGI48_RS03090 0.11 -1.3
656,999 + HGI48_RS03090 0.14 +0.3
657,000 - HGI48_RS03090 0.14 -0.2
657,000 - HGI48_RS03090 0.14 -1.1
657,055 - +0.5
657,079 + HGI48_RS03090 0.21 -1.5
657,080 - HGI48_RS03090 0.21 +0.9
657,310 - HGI48_RS03090 0.42 +0.5
657,310 - HGI48_RS03090 0.42 -1.1
657,310 - HGI48_RS03090 0.42 +0.7
657,401 + HGI48_RS03090 0.50 +1.4
657,401 + HGI48_RS03090 0.50 -0.0
657,401 + HGI48_RS03090 0.50 -0.5
657,459 + HGI48_RS03090 0.55 +1.2
657,459 + HGI48_RS03090 0.55 -0.2
657,460 - HGI48_RS03090 0.55 -0.6
657,460 - HGI48_RS03090 0.55 -0.6
657,493 - HGI48_RS03090 0.58 -1.2
657,498 - HGI48_RS03090 0.59 -1.8
657,515 - HGI48_RS03090 0.60 -0.8
657,515 - HGI48_RS03090 0.60 -0.2
657,532 - HGI48_RS03090 0.62 -0.0
657,532 - HGI48_RS03090 0.62 +0.5
657,574 - HGI48_RS03090 0.66 -1.5
657,649 + HGI48_RS03090 0.72 -0.5
657,649 + HGI48_RS03090 0.72 -0.8
657,650 - HGI48_RS03090 0.73 +0.1
657,680 + HGI48_RS03090 0.75 -1.5
657,681 - +1.5
657,694 + HGI48_RS03090 0.76 -0.7
657,695 - +2.1
657,695 - HGI48_RS03090 0.77 -0.7
657,702 + HGI48_RS03090 0.77 +0.8
657,726 + HGI48_RS03090 0.79 -1.8
657,726 + HGI48_RS03090 0.79 -1.8
657,727 - HGI48_RS03090 0.79 +0.4
657,727 - HGI48_RS03090 0.79 -0.5
657,727 - HGI48_RS03090 0.79 -0.5
657,813 - HGI48_RS03090 0.87 -0.1

Or see this region's nucleotide sequence